F228479

General Info

Members Datasets Scaffolds Average Seq Length
157 127 314 698

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2622736626|2623591601
Length 749
Sequence SAAERVLAGLDPEQRSAVTAPAGPVCILAGAGTGKTRAVTSRIAHRALAGDISARHVLAVTFTARAAAEMRSRLAGLGVPGVQARTFHAAALRQVRYFAPRLLEGRAMPELLESKVRLVTLAAAKVGLRADRAAARDLAGEIEWAKSSLVEPAEYVVAAAKALRDTPHEPAKVAEVFAAYEKIKRGNGVIDFEDMLRAAVWGIEEHPDVAEQVRGQYRHFVVDEYQDVNPLQQRLLEAWLGGRDDLTVVGDASQTIYSFTGATSSYLVDFPRRHRGATVVRLVRDYRSTPQVVGLANAVISQARGAEARLRLELVGQRPPGPEPELRIFTDEPAEASAVAARCRALVDGGTPAREIAVLFRTNAQSEAYEKALTEAEVPYLVQGAERFFERPEVRQAMVALRAATRSIDGSRSGRGARRAELELSQGETPLRAAVVEALSAVGWAPDAAPAGGAARERWEALAALVQLAEEYAATPPASARSELASPAVASEGPALPLPIGSAAAVERLVTLTDFNDELARRAVQQHVPTVDGVTLASLHSAKGLEWDAVFLVGLAEGTLPTSYAKTPEQVEEERRLLYVGVTRAREWLWLSYAAARSPGGRARRPSRFLPQLDRSGGTERAGAARRTERRRTQVVSCRICGATLLAGADRKLGRCPTCPSDIDLELYERLREWRQRVAGAQKVPAYVIFTDATLTALAERKPGRPEELIAIAGIGPRKLGLYGDTVLALVGGAAVDAVCPEKTFEIEP

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
5 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
6 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
7 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
8 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
9 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
10 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
11 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
12 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
13 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
14 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
15 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
16 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
17 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
18 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
19 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
24 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
28 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
29 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
30 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
31 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
32 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
33 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
34 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
35 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
36 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
37 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
38 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
39 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
40 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
41 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
42 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
43 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
44 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
45 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
46 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
47 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
48 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
49 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
50 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
51 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
52 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
53 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
54 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
55 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
56 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
57 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
58 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
59 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
60 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
61 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
62 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
63 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
64 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
65 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
66 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
67 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
69 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
70 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
71 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
72 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
73 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
74 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
75 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
76 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
77 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
78 3300053143 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 endosphere Metagenome Endosphere
79 2622736626 Micromonospora rhizosphaerae DSM 45431 Isolate Rhizosphere
80 2501939600 Micromonospora sp. L5 Isolate Unclassified
81 2515154088 Salinispora arenicola CNT800 Isolate Rhizosphere
82 2515154129 Salinispora pacifica CNS103 Isolate Rhizosphere
83 2515154137 Salinispora arenicola CNX482 Isolate Rhizosphere
84 2515154202 Salinispora pacifica CNT084 Isolate Rhizosphere
85 2515154203 Salinispora arenicola CNR921 Isolate Rhizosphere
86 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
87 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
88 2772190715 Micromonospora chokoriensis NRRL B-24750 Isolate Unclassified
89 2831935698 Jishengella sp. AZ1-13 Isolate Unclassified
90 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
91 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
92 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
93 2855683550 Micromonospora sp. RP3T Isolate Unclassified
94 2856858025 Micromonospora aurantiaca 110B(2018) Isolate Unclassified
95 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
96 2858848962 Micromonospora saelicesensis GAR06 Isolate Unclassified
97 2858868258 Micromonospora sp. MH33 Isolate Unclassified
98 2858882152 Micromonospora noduli MED15 Isolate Nodule
99 2858888857 Micromonospora saelicesensis Lupac 06 Isolate Unclassified
100 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
101 2858902515 Micromonospora sp. MW-13 Isolate Rhizosphere
102 2861520306 Phytomonospora endophytica DSM 45386 Isolate Unclassified
103 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
104 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
105 2867312974 Micromonospora musae NGC1-4 Isolate Unclassified
106 2867319477 Micromonospora musae MS1-9 Isolate Unclassified
107 2867507094 Micromonospora zingiberis PLAI 1-1 Isolate Unclassified
108 2869048445 Micromonospora saelicesensis PSN01 Isolate Unclassified
109 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
110 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
111 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
112 2880495981 Micromonospora vinacea DSM 101695 Isolate Unclassified
113 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
114 2902582711 Micromonospora sp. AP08 Isolate Unclassified
115 2929219909 Micromonospora sp. R-75348 Hybrid assembly Isolate Unclassified
116 2929226422 Micromonospora sp. R-74116 Hybrid assembly Isolate Unclassified
117 2996221748 Micromonospora veneta CAP181 Isolate Unclassified
118 649633069 Micromonospora sp. L5 Isolate Unclassified
119 8001781756 Catellatospora tritici NEAU-YM18 Isolate Rhizosphere
120 8003830390 Micromonospora parastrephiae STR1_7 Isolate Rhizosphere
121 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
122 8054704163 Micromonospora trifolii NIE79 Isolate Nodule
123 8054727385 Micromonospora alfalfae MED01 Isolate Nodule
124 8054734606 Micromonospora hortensis NIE111 Isolate Nodule
125 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule
126 8056054917 Glycomyces luteolus NEAU-A15 Isolate Rhizosphere
127 8057568493 Actinorhabdospora filicis NBRC 111898 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 68.79
Metatranscriptomes 0
Isolates 31.21

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.27
Nodule 3.82
Rhizoplane 2.55
Rhizosphere 65.61
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10005338 3300003203 Bacteria 5961
2 Ga0070658_10001865 3300005327 Bacteria 17765
3 Ga0070683_100003182 3300005329 Bacteria 13246
4 Ga0070661_100063903 3300005344 Bacteria 2704
5 Ga0070668_100001034 3300005347 Bacteria 19537
6 Ga0070684_100004777 3300005535 Bacteria 10351
7 Ga0081540_1000738 3300005983 Bacteria 30092
8 Ga0081539_10000213 3300005985 Bacteria 136148
9 Ga0081539_10000938 3300005985 Bacteria 54684
10 Ga0081539_10005561 3300005985 Bacteria 12767
11 Ga0081539_10006184 3300005985 Bacteria 11637
12 Ga0081539_10007384 3300005985 Bacteria 10048
13 Ga0075428_100000117 3300006844 Bacteria 68053
14 Ga0075428_100000905 3300006844 Bacteria 31306
15 Ga0075430_100001836 3300006846 Bacteria 17381
16 Ga0075430_100003142 3300006846 Bacteria 13814
17 Ga0075430_100021743 3300006846 Bacteria 5452
18 Ga0075431_100002017 3300006847 Bacteria 19386
19 Ga0075431_100018710 3300006847 Bacteria 7058
20 Ga0075431_100023029 3300006847 Bacteria 6368
21 Ga0075431_100026009 3300006847 Bacteria 6000
22 Ga0075431_100165593 3300006847 Bacteria 2272
23 Ga0075429_100003253 3300006880 Bacteria 13832
24 Ga0075429_100021957 3300006880 Bacteria 5534
25 Ga0075429_100023536 3300006880 Bacteria 5346
26 Ga0114129_10000001 3300009147 Bacteria 292978
27 Ga0114129_10000525 3300009147 Bacteria 46845
28 Ga0114129_10003879 3300009147 Bacteria 21098
29 Ga0157369_10012311 3300013105 Bacteria 9715
30 Ga0163163_10016104 3300014325 Bacteria 6936
31 Ga0157379_10013167 3300014968 Bacteria 7242
32 Ga0213876_10002114 3300021384 Bacteria 11750
33 Ga0207705_10005555 3300025909 Bacteria 9424
34 Ga0207707_10083652 3300025912 Bacteria 2786
35 Ga0207649_10010464 3300025920 Bacteria 5097
36 Ga0207661_10002938 3300025944 Bacteria 11787
37 Ga0207661_10004832 3300025944 Bacteria 9441
38 Ga0207668_10001070 3300025972 Bacteria 16343
39 Ga0207641_10051868 3300026088 Bacteria 3474
40 Ga0207676_10042652 3300026095 Bacteria 3490
41 Ga0207674_10032879 3300026116 Bacteria 5437
42 Ga0268265_10020937 3300028380 Bacteria 4572
43 Ga0307515_10000065 3300028794 Bacteria 244497
44 Ga0307515_10015719 3300028794 Bacteria 13924
45 Ga0307512_10005337 3300030522 Bacteria 13453
46 Ga0316181_1014709 3300030744 Bacteria 4257
47 Ga0265339_10018026 3300031249 Bacteria 4170
48 Ga0307513_10000087 3300031456 Bacteria 130765
49 Ga0307509_10016906 3300031507 Bacteria 8415
50 Ga0307508_10010186 3300031616 Bacteria 8604
51 Ga0307508_10013414 3300031616 Bacteria 7493
52 Ga0307508_10030764 3300031616 Bacteria 4851
53 Ga0265314_10025961 3300031711 Bacteria 4410
54 Ga0307516_10001398 3300031730 Bacteria 33357
55 Ga0307405_10008530 3300031731 Bacteria 5204
56 Ga0307406_10011915 3300031901 Bacteria 4942
57 Ga0307409_100000088 3300031995 Bacteria 32733
58 Ga0307409_100016276 3300031995 Bacteria 4914
59 Ga0307416_100001921 3300032002 Bacteria 11601
60 Ga0307415_100000033 3300032126 Bacteria 59342
61 Ga0307415_100033437 3300032126 Bacteria 3338
62 Ga0307507_10045794 3300033179 Bacteria 4298
63 Ga0373951_0000065 3300035091 Bacteria 41796
64 Ga0395899_0001675 3300037312 Bacteria 18472
65 Ga0395900_0003124 3300037418 Bacteria 17982
66 Ga0395905_0003289 3300037471 Bacteria 17361
67 Ga0395901_0008356 3300038443 Bacteria 10464
68 Ga0436365_1865300 3300039437 Bacteria 40590
69 Ga0439439_0002410 3300041406 Bacteria 3967
70 Ga0439449_0014435 3300042007 Bacteria 2970
71 Ga0439457_002165 3300042014 Bacteria 5700
72 Ga0466964_0010431 3300044706 Bacteria 3505
73 Ga0466958_0007236 3300045836 Bacteria 6087
74 Ga0466967_0025281 3300045976 Bacteria 4895
75 Ga0495629_0009434 3300046459 Bacteria 7137
76 Ga0495606_0002094 3300046507 Bacteria 24292
77 Ga0495668_0000323 3300046616 Bacteria 65541
78 Ga0495625_0000812 3300046660 Bacteria 43238
79 Ga0495626_0000186 3300048091 Bacteria 75709
80 Ga0496104_0008712 3300048907 Bacteria 9021
81 Ga0496108_0000010 3300048911 Bacteria 273269
82 Ga0496112_0028741 3300048915 Bacteria 5370
83 Ga0496113_0028156 3300048916 Bacteria 4038
84 Ga0496126_0108153 3300048929 Bacteria 2425
85 Ga0501034_0132145 3300049571 Bacteria 2479
86 Ga0501037_0029771 3300049573 Bacteria 4034
87 Ga0501043_0095245 3300049579 Bacteria 2340
88 Ga0501046_0009995 3300049580 Bacteria 8173
89 Ga0501070_0009256 3300049586 Bacteria 8331
90 Ga0501070_0018448 3300049586 Bacteria 5853
91 Ga0501070_0020400 3300049586 Bacteria 5560
92 Ga0501074_0006119 3300049590 Bacteria 8690
93 Ga0501079_0001349 3300049741 Bacteria 17257
94 Ga0501080_0007096 3300049742 Bacteria 10116
95 Ga0501080_0020195 3300049742 Bacteria 6166
96 Ga0501044_0011745 3300049823 Bacteria 9487
97 Ga0501044_0059501 3300049823 Bacteria 3914
98 nmdc:mga05p37_1399_c1 3300050507 Bacteria 28060
99 nmdc:mga05p37_37202_c1 3300050507 Bacteria 5969
100 nmdc:mga09592_169_c1 3300050508 Bacteria 46080
101 nmdc:mga09592_59539_c1 3300050508 Bacteria 3229
102 nmdc:mga0qj67_196_c1 3300050509 Bacteria 40956
103 nmdc:mga06r32_154031_c1 3300050510 Bacteria 2278
104 nmdc:mga06r32_15476_c1 3300050510 Bacteria 6924
105 nmdc:mga06r32_197_c1 3300050510 Bacteria 48402
106 nmdc:mga06r32_8214_c1 3300050510 Bacteria 9396
107 Ga0500646_0000428 3300053090 Bacteria 12550
108 Ga0500579_041920 3300053143 Bacteria 2868
109 2623591601 2622736626 Bacteria 7181580
110 2501940391 2501939600 Bacteria 6907073
111 2515496345 2515154088 Bacteria 5526283
112 2515718485 2515154129 Bacteria 5584369
113 2515756496 2515154137 Bacteria 5711575
114 2516082846 2515154202 Bacteria 5471270
115 2516089278 2515154203 Bacteria 5458536
116 2676481307 2675903059 Bacteria 8644972
117 2753271502 2751185782 Bacteria 11227053
118 2772645799 2772190715 Bacteria 6959372
119 2831939993 2831935698 Bacteria 5963223
120 2832007124 2832004796 Bacteria 6538017
121 2855670528 2855670206 Bacteria 7120389
122 2855682095 2855676851 Bacteria 7063653
123 2855688045 2855683550 Bacteria 7134265
124 2856858653 2856858025 Bacteria 7255264
125 2857288874 2857288857 Bacteria 7189066
126 2858854298 2858848962 Bacteria 6963058
127 2858869478 2858868258 Bacteria 7683772
128 2858887279 2858882152 Bacteria 7230291
129 2858893837 2858888857 Bacteria 7060307
130 2858898483 2858895516 Bacteria 7378898
131 2858903144 2858902515 Bacteria 7086037
132 2861521263 2861520306 Bacteria 8348283
133 2866069919 2866065130 Bacteria 6518152
134 2867305421 2867302475 Bacteria 7087181
135 2867316651 2867312974 Bacteria 7058875
136 2867321844 2867319477 Bacteria 7069771
137 2867512191 2867507094 Bacteria 6506033
138 2869049202 2869048445 Bacteria 6875584
139 2869061954 2869061728 Bacteria 7112407
140 2869070512 2869068681 Bacteria 7205615
141 2880495487 2880489317 Bacteria 7096270
142 2880496869 2880495981 Bacteria 7340502
143 2887484759 2887478801 Bacteria 8972725
144 2902583812 2902582711 Bacteria 6187705
145 2929225489 2929219909 Bacteria 6984360
146 2929231534 2929226422 Bacteria 7248583
147 2996223933 2996221748 Bacteria 6799777
148 649813165 649633069 Bacteria 6962533
149 8001782288 8001781756 Bacteria 9586736
150 8003831185 8003830390 Bacteria 6541657
151 8003863591 8003856774 Bacteria 7675274
152 8054704445 8054704163 Bacteria 7247792
153 8054734451 8054727385 Bacteria 7558670
154 8054740214 8054734606 Bacteria 6947278
155 8055415995 8055412473 Bacteria 6257500
156 8056057260 8056054917 Bacteria 5736694
157 8057575276 8057568493 Bacteria 7221719
158 JGI25406J46586_10005338
159 Ga0070658_10001865
160 Ga0070683_100003182
161 Ga0070661_100063903
162 Ga0070668_100001034
163 Ga0070684_100004777
164 Ga0081540_1000738
165 Ga0081539_10000213
166 Ga0081539_10000938
167 Ga0081539_10005561
168 Ga0081539_10006184
169 Ga0081539_10007384
170 Ga0075428_100000117
171 Ga0075428_100000905
172 Ga0075430_100001836
173 Ga0075430_100003142
174 Ga0075430_100021743
175 Ga0075431_100002017
176 Ga0075431_100018710
177 Ga0075431_100023029
178 Ga0075431_100026009
179 Ga0075431_100165593
180 Ga0075429_100003253
181 Ga0075429_100021957
182 Ga0075429_100023536
183 Ga0114129_10000001
184 Ga0114129_10000525
185 Ga0114129_10003879
186 Ga0157369_10012311
187 Ga0163163_10016104
188 Ga0157379_10013167
189 Ga0213876_10002114
190 Ga0207705_10005555
191 Ga0207707_10083652
192 Ga0207649_10010464
193 Ga0207661_10002938
194 Ga0207661_10004832
195 Ga0207668_10001070
196 Ga0207641_10051868
197 Ga0207676_10042652
198 Ga0207674_10032879
199 Ga0268265_10020937
200 Ga0307515_10000065
201 Ga0307515_10015719
202 Ga0307512_10005337
203 Ga0316181_1014709
204 Ga0265339_10018026
205 Ga0307513_10000087
206 Ga0307509_10016906
207 Ga0307508_10010186
208 Ga0307508_10013414
209 Ga0307508_10030764
210 Ga0265314_10025961
211 Ga0307516_10001398
212 Ga0307405_10008530
213 Ga0307406_10011915
214 Ga0307409_100000088
215 Ga0307409_100016276
216 Ga0307416_100001921
217 Ga0307415_100000033
218 Ga0307415_100033437
219 Ga0307507_10045794
220 Ga0373951_0000065
221 Ga0395899_0001675
222 Ga0395900_0003124
223 Ga0395905_0003289
224 Ga0395901_0008356
225 Ga0436365_1865300
226 Ga0439439_0002410
227 Ga0439449_0014435
228 Ga0439457_002165
229 Ga0466964_0010431
230 Ga0466958_0007236
231 Ga0466967_0025281
232 Ga0495629_0009434
233 Ga0495606_0002094
234 Ga0495668_0000323
235 Ga0495625_0000812
236 Ga0495626_0000186
237 Ga0496104_0008712
238 Ga0496108_0000010
239 Ga0496112_0028741
240 Ga0496113_0028156
241 Ga0496126_0108153
242 Ga0501034_0132145
243 Ga0501037_0029771
244 Ga0501043_0095245
245 Ga0501046_0009995
246 Ga0501070_0009256
247 Ga0501070_0018448
248 Ga0501070_0020400
249 Ga0501074_0006119
250 Ga0501079_0001349
251 Ga0501080_0007096
252 Ga0501080_0020195
253 Ga0501044_0011745
254 Ga0501044_0059501
255 nmdc:mga05p37_1399_c1
256 nmdc:mga05p37_37202_c1
257 nmdc:mga09592_169_c1
258 nmdc:mga09592_59539_c1
259 nmdc:mga0qj67_196_c1
260 nmdc:mga06r32_154031_c1
261 nmdc:mga06r32_15476_c1
262 nmdc:mga06r32_197_c1
263 nmdc:mga06r32_8214_c1
264 Ga0500646_0000428
265 Ga0500579_041920
266 2623591601
267 2501940391
268 2515496345
269 2515718485
270 2515756496
271 2516082846
272 2516089278
273 2676481307
274 2753271502
275 2772645799
276 2831939993
277 2832007124
278 2855670528
279 2855682095
280 2855688045
281 2856858653
282 2857288874
283 2858854298
284 2858869478
285 2858887279
286 2858893837
287 2858898483
288 2858903144
289 2861521263
290 2866069919
291 2867305421
292 2867316651
293 2867321844
294 2867512191
295 2869049202
296 2869061954
297 2869070512
298 2880495487
299 2880496869
300 2887484759
301 2902583812
302 2929225489
303 2929231534
304 2996223933
305 649813165
306 8001782288
307 8003831185
308 8003863591
309 8054704445
310 8054734451
311 8054740214
312 8055415995
313 8056057260
314 8057575276

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00570

HRDC

HRDC domain

664

731

0.97

PF13361

UvrD_C

UvrD-like helicase C-terminal domain

280

415

0.93

PF13245

AAA_19

AAA domain

14

260

0.9

PF00580

UvrD-helicase

UvrD/REP helicase N-terminal domain

10

275

0.89

PF13361

UvrD_C

UvrD-like helicase C-terminal domain

416

596

0.86

PF13538

UvrD_C_2

UvrD-like helicase C-terminal domain

533

592

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
1wud-assembly1.cif.gz_A e. coli recq hrdc domain 0.9877 624 693
2rhf-assembly1.cif.gz_A d. radiodurans recq hrdc domain 3 0.9584 628 693
2e1e-assembly1.cif.gz_A crystal structure of the hrdc domain of human werner syndrome protein, wrn 0.9057 627 693
1wud-assembly1.cif.gz_A e. coli recq hrdc domain 0.8876 624 693
2kv2-assembly1.cif.gz_A solution structure of the human blm hrdc domain 0.8745 626 693
ID Description Score Start End Superfamily
2rhfA00 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;HRDC domain 0.9448 628 693 1.10.150.80
af_Q14191_1145_1233_1.10.150.80 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;HRDC domain 0.9117 627 693 1.10.150.80
2is1A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8962 2 277 3.40.50.300
2pjrA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8914 5 277 3.40.50.300
2pjrA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8826 5 277 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A7W0Y001-F1-model_v4 ATP-dependent helicase 0.9589 2 273 GO:0000725
GO:0003677
GO:0005524
GO:0005829
GO:0016787
GO:0033202
GO:0043138
AF-A0A0S1UJK3-F1-model_v4 deleted 0.9375 1 335
AF-A0A7K0U161-F1-model_v4 AAA family ATPase 0.9291 2 238 GO:0000725
GO:0003677
GO:0005524
GO:0005829
GO:0009378
GO:0016787
GO:0033202
GO:0036121
GO:0061749
GO:1990518
AF-A0A7W0Y001-F1-model_v4 ATP-dependent helicase 0.9132 2 273 GO:0000725
GO:0003677
GO:0005524
GO:0005829
GO:0016787
GO:0033202
GO:0043138
AF-W4UFZ5-F1-model_v4 deleted 0.8987 2 367

Map