F227358

General Info

Members Datasets Scaffolds Average Seq Length
157 128 314 302

Family's Representative Sequence

Representative Sequence 3300020082|Ga0206353_10915771|Ga0206353_109157712
Length 356
Sequence VSRLAQPRFRSGAVTVRPPATSANLGPGFDAFGLALELRDEVVVEALDEPGLYVEVTGEGSGEVPLDERHLLVRSLRAGFDALGGQPTGLRVSCRNRIPHGRGLGSSSAAICAGLVAARELVEGGASVLDDDALLAMATRIEGHPDNVAPALRGGLTVAWMQGPEDEWHQEDEAPSEAVKAQDTADAGGFKPRDMRAFALRLTPDADVSAVVFIPANRLATEVARGLLPQLVPHTDASANAGRAALLTAALTAPELTHHHRAVLLHAATRDRLHQDYRAPAMPDSAALIRRLRADGFAAAVSGAGPSVLVLTVGTGWPRKAAAYAPEGWDVMVLSVAAAGVTAAAGAERPGPTDTP

Samples

Sample ID Description Type Environment
1 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
2 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
5 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
6 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
7 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
8 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
9 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
10 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
11 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
12 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
13 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
14 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
15 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
16 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
19 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
22 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
23 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
24 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
25 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
26 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
27 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
29 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
30 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
31 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
32 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
33 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
34 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
35 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
36 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
37 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
38 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
39 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
63 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
65 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
66 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
67 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
68 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
69 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
70 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
71 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
72 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
73 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
74 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
75 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
76 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
77 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
78 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
79 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
80 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
81 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
82 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
83 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
84 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
85 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
86 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
87 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
88 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
89 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
90 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
91 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
92 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
93 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
94 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
95 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
96 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
97 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
98 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
99 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
100 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
101 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
106 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
107 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
108 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
109 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
110 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
111 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
112 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
113 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
114 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
115 2643221575 Microbacterium sp. Root61 Isolate Unclassified
116 2643221615 Nocardioides sp. Root224 Isolate Unclassified
117 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
118 2773857759 Microbacterium sp. 1294 Isolate Unclassified
119 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
120 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
121 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
122 2818991318 Humibacillus xanthopallidus SLBN-155 Isolate Unclassified
123 2855386786 Nocardioides ferulae EGI 63112 Isolate Unclassified
124 2857481737 Nocardioides sp. R-74106 Isolate Unclassified
125 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
126 2905926851 Arthrobacter sedimenti MIC A30 Isolate Rhizosphere
127 2946003308 Arthrobacter agilis W3I6 Isolate Rhizosphere
128 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 89.17
Metatranscriptomes 1.91
Isolates 8.92

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.55
Nodule 0
Rhizoplane 9.55
Rhizosphere 77.71
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0206353_10915771 3300020082 Bacteria 3243
2 JGI24738J21930_10011535 3300002075 Bacteria 1942
3 Ga0070658_10212322 3300005327 Bacteria 1635
4 Ga0070692_10003284 3300005345 Bacteria 6526
5 Ga0070669_100235536 3300005353 Bacteria 1453
6 Ga0070659_100097766 3300005366 Bacteria 2360
7 Ga0070714_100111096 3300005435 Bacteria 2427
8 Ga0070701_10045079 3300005438 Bacteria 2261
9 Ga0070662_100167289 3300005457 Bacteria 1724
10 Ga0068867_100005076 3300005459 Bacteria 9297
11 Ga0070684_100392320 3300005535 Bacteria 1279
12 Ga0070697_100127655 3300005536 Bacteria 2131
13 Ga0068853_100200300 3300005539 Bacteria 1817
14 Ga0070672_100053733 3300005543 Bacteria 3150
15 Ga0070686_100074001 3300005544 Bacteria 2238
16 Ga0070704_100147897 3300005549 Bacteria 1843
17 Ga0068855_100104007 3300005563 Bacteria 3266
18 Ga0068855_100339664 3300005563 Bacteria 1656
19 Ga0068855_100408750 3300005563 Bacteria 1486
20 Ga0070664_100183089 3300005564 Bacteria 1863
21 Ga0070664_100190322 3300005564 Bacteria 1828
22 Ga0068854_100035741 3300005578 Bacteria 3479
23 Ga0068856_100174024 3300005614 Bacteria 2165
24 Ga0070702_100034581 3300005615 Bacteria 2786
25 Ga0068852_100121953 3300005616 Bacteria 2388
26 Ga0068861_100007491 3300005719 Bacteria 7483
27 Ga0068861_100109469 3300005719 Bacteria 2211
28 Ga0068862_100478905 3300005844 Bacteria 1178
29 Ga0068862_100506930 3300005844 Bacteria 1146
30 Ga0075365_10181556 3300006038 Bacteria 1471
31 Ga0075365_10182209 3300006038 Bacteria 1469
32 Ga0075428_100347994 3300006844 Bacteria 1591
33 Ga0111539_10134284 3300009094 Bacteria 2898
34 Ga0111539_10181954 3300009094 Bacteria 2454
35 Ga0111539_10367552 3300009094 Bacteria 1674
36 Ga0111539_10849528 3300009094 Bacteria 1062
37 Ga0105245_10102330 3300009098 Bacteria 2653
38 Ga0105245_10250981 3300009098 Bacteria 1719
39 Ga0105243_10011284 3300009148 Bacteria 6759
40 Ga0105241_10050335 3300009174 Bacteria 3175
41 Ga0105242_10307106 3300009176 Bacteria 1450
42 Ga0105237_10142324 3300009545 Bacteria 2393
43 Ga0105249_10030461 3300009553 Bacteria 4877
44 Ga0105239_10241685 3300010375 Bacteria 2026
45 Ga0157375_10506548 3300013308 Bacteria 1371
46 Ga0163163_10234536 3300014325 Bacteria 1884
47 Ga0157380_10034788 3300014326 Bacteria 3888
48 Ga0157380_10069927 3300014326 Bacteria 2834
49 Ga0157377_10030620 3300014745 Bacteria 2917
50 Ga0206353_10002008 3300020082 Bacteria 9675
51 Ga0206353_10232628 3300020082 Bacteria 2283
52 Ga0207655_1079546 3300025728 Bacteria 1188
53 Ga0207688_10026804 3300025901 Bacteria 3170
54 Ga0207643_10001341 3300025908 Bacteria 14242
55 Ga0207705_10148160 3300025909 Bacteria 1757
56 Ga0207662_10076879 3300025918 Bacteria 2030
57 Ga0207664_10103111 3300025929 Bacteria 2360
58 Ga0207690_10116662 3300025932 Bacteria 1931
59 Ga0207709_10016836 3300025935 Bacteria 4073
60 Ga0207669_10056172 3300025937 Bacteria 2389
61 Ga0207691_10000684 3300025940 Bacteria 33504
62 Ga0207711_10185115 3300025941 Bacteria 1895
63 Ga0207661_10347239 3300025944 Bacteria 1338
64 Ga0207661_10388459 3300025944 Bacteria 1264
65 Ga0207679_10034465 3300025945 Bacteria 3572
66 Ga0207679_10082479 3300025945 Bacteria 2462
67 Ga0207667_10040226 3300025949 Bacteria 4979
68 Ga0207667_10145755 3300025949 Bacteria 2437
69 Ga0207677_10084172 3300026023 Bacteria 2292
70 Ga0207639_10027309 3300026041 Bacteria 4157
71 Ga0207678_10158262 3300026067 Bacteria 1934
72 Ga0207708_10000521 3300026075 Bacteria 29697
73 Ga0207702_10062327 3300026078 Bacteria 3184
74 Ga0207702_10391669 3300026078 Bacteria 1338
75 Ga0207648_10013443 3300026089 Bacteria 7617
76 Ga0207675_100145764 3300026118 Bacteria 2251
77 Ga0207675_100274598 3300026118 Bacteria 1636
78 Ga0207683_10067043 3300026121 Bacteria 3166
79 Ga0207698_10200809 3300026142 Bacteria 1785
80 Ga0207428_10047856 3300027907 Bacteria 3433
81 Ga0268265_10095377 3300028380 Bacteria 2389
82 Ga0265334_10027298 3300028573 Bacteria 2301
83 Ga0265318_10003368 3300028577 Bacteria 8062
84 Ga0307407_10119027 3300031903 Bacteria 1671
85 Ga0307409_100251604 3300031995 Bacteria 1616
86 Ga0307414_10525654 3300032004 Bacteria 1051
87 Ga0307507_10000001 3300033179 Bacteria 417520
88 Ga0395905_0019338 3300037471 Bacteria 6458
89 Ga0395905_0200650 3300037471 Bacteria 1870
90 Ga0439461_0016127 3300041410 Bacteria 1439
91 Ga0439431_0008650 3300041997 Bacteria 2290
92 Ga0439446_0003740 3300042156 Bacteria 3802
93 Ga0439434_0003187 3300042435 Bacteria 4818
94 Ga0466969_0011255 3300044656 Bacteria 4736
95 Ga0466972_0039056 3300044658 Bacteria 2318
96 Ga0466965_0040103 3300044683 Bacteria 2304
97 Ga0466966_0010397 3300044684 Bacteria 6180
98 Ga0466966_0201510 3300044684 Bacteria 1204
99 Ga0466961_0025240 3300044693 Bacteria 3822
100 Ga0466961_0124978 3300044693 Bacteria 1614
101 Ga0466961_0140381 3300044693 Bacteria 1513
102 Ga0466963_0003492 3300044694 Bacteria 9017
103 Ga0466964_0013306 3300044706 Bacteria 3121
104 Ga0453684_0001037 3300044712 Bacteria 88904
105 Ga0453684_0262639 3300044712 Bacteria 1977
106 Ga0466968_0096817 3300044735 Bacteria 1314
107 Ga0466960_0000208 3300044901 Bacteria 20349
108 Ga0466960_0013492 3300044901 Bacteria 3473
109 Ga0466958_0006376 3300045836 Bacteria 6416
110 Ga0466958_0102101 3300045836 Bacteria 1784
111 Ga0495664_0037280 3300046477 Bacteria 2869
112 Ga0496101_0110544 3300048904 Bacteria 2068
113 Ga0496101_0280104 3300048904 Bacteria 1303
114 Ga0496104_0123130 3300048907 Bacteria 2489
115 Ga0496104_0206294 3300048907 Bacteria 1877
116 Ga0496105_0016995 3300048908 Bacteria 5822
117 Ga0496108_0191462 3300048911 Bacteria 1773
118 Ga0496109_0216657 3300048912 Bacteria 1800
119 Ga0496109_0342692 3300048912 Bacteria 1411
120 Ga0496110_0005560 3300048913 Bacteria 9893
121 Ga0496111_0024170 3300048914 Bacteria 4275
122 Ga0496112_0000001 3300048915 Bacteria 1346031
123 Ga0496113_0232625 3300048916 Bacteria 1470
124 Ga0496114_0013643 3300048917 Bacteria 6514
125 Ga0496114_0310717 3300048917 Bacteria 1392
126 Ga0496115_0045582 3300048918 Bacteria 3501
127 Ga0496122_0110658 3300048925 Bacteria 1804
128 Ga0496124_0126484 3300048927 Bacteria 2035
129 Ga0496125_0000015 3300048928 Bacteria 516648
130 Ga0501031_0042839 3300049568 Bacteria 2955
131 Ga0501040_0045369 3300049576 Bacteria 2998
132 Ga0501041_0015112 3300049577 Bacteria 4586
133 Ga0501048_0028538 3300049582 Bacteria 4051
134 Ga0501067_0081565 3300049583 Bacteria 1793
135 Ga0501070_0317011 3300049586 Bacteria 1269
136 Ga0501072_0035281 3300049588 Bacteria 3920
137 Ga0501035_0136536 3300049822 Bacteria 2135
138 nmdc:mga08y16_177373_c1 3300050511 Bacteria 2213
139 Ga0495619_0353501 3300053085 Bacteria 1016
140 Ga0500556_0000284 3300053104 Bacteria 39641
141 Ga0500593_002613 3300053117 Bacteria 6648
142 Ga0501084_0090300 3300054114 Bacteria 2572
143 Ga0466962_0002109 3300061719 Bacteria 9406
144 2643888593 2643221575 Bacteria 4022601
145 2644090666 2643221615 Bacteria 5487866
146 2644320470 2643221657 Bacteria 5490246
147 2774383723 2773857759 Bacteria 2963774
148 2774396826 2773857762 Bacteria 5971770
149 2809198465 2808606439 Bacteria 5952208
150 2812349687 2811994878 Bacteria 5992952
151 2819426629 2818991318 Bacteria 5266538
152 2855390678 2855386786 Bacteria 4752232
153 2857482254 2857481737 Bacteria 4761446
154 2891969528 2891968417 Bacteria 5821697
155 2905929085 2905926851 Bacteria 4423176
156 2946005253 2946003308 Bacteria 3857229
157 2977251768 2977251589 Bacteria 2952848
158 Ga0206353_10915771
159 JGI24738J21930_10011535
160 Ga0070658_10212322
161 Ga0070692_10003284
162 Ga0070669_100235536
163 Ga0070659_100097766
164 Ga0070714_100111096
165 Ga0070701_10045079
166 Ga0070662_100167289
167 Ga0068867_100005076
168 Ga0070684_100392320
169 Ga0070697_100127655
170 Ga0068853_100200300
171 Ga0070672_100053733
172 Ga0070686_100074001
173 Ga0070704_100147897
174 Ga0068855_100104007
175 Ga0068855_100339664
176 Ga0068855_100408750
177 Ga0070664_100183089
178 Ga0070664_100190322
179 Ga0068854_100035741
180 Ga0068856_100174024
181 Ga0070702_100034581
182 Ga0068852_100121953
183 Ga0068861_100007491
184 Ga0068861_100109469
185 Ga0068862_100478905
186 Ga0068862_100506930
187 Ga0075365_10181556
188 Ga0075365_10182209
189 Ga0075428_100347994
190 Ga0111539_10134284
191 Ga0111539_10181954
192 Ga0111539_10367552
193 Ga0111539_10849528
194 Ga0105245_10102330
195 Ga0105245_10250981
196 Ga0105243_10011284
197 Ga0105241_10050335
198 Ga0105242_10307106
199 Ga0105237_10142324
200 Ga0105249_10030461
201 Ga0105239_10241685
202 Ga0157375_10506548
203 Ga0163163_10234536
204 Ga0157380_10034788
205 Ga0157380_10069927
206 Ga0157377_10030620
207 Ga0206353_10002008
208 Ga0206353_10232628
209 Ga0207655_1079546
210 Ga0207688_10026804
211 Ga0207643_10001341
212 Ga0207705_10148160
213 Ga0207662_10076879
214 Ga0207664_10103111
215 Ga0207690_10116662
216 Ga0207709_10016836
217 Ga0207669_10056172
218 Ga0207691_10000684
219 Ga0207711_10185115
220 Ga0207661_10347239
221 Ga0207661_10388459
222 Ga0207679_10034465
223 Ga0207679_10082479
224 Ga0207667_10040226
225 Ga0207667_10145755
226 Ga0207677_10084172
227 Ga0207639_10027309
228 Ga0207678_10158262
229 Ga0207708_10000521
230 Ga0207702_10062327
231 Ga0207702_10391669
232 Ga0207648_10013443
233 Ga0207675_100145764
234 Ga0207675_100274598
235 Ga0207683_10067043
236 Ga0207698_10200809
237 Ga0207428_10047856
238 Ga0268265_10095377
239 Ga0265334_10027298
240 Ga0265318_10003368
241 Ga0307407_10119027
242 Ga0307409_100251604
243 Ga0307414_10525654
244 Ga0307507_10000001
245 Ga0395905_0019338
246 Ga0395905_0200650
247 Ga0439461_0016127
248 Ga0439431_0008650
249 Ga0439446_0003740
250 Ga0439434_0003187
251 Ga0466969_0011255
252 Ga0466972_0039056
253 Ga0466965_0040103
254 Ga0466966_0010397
255 Ga0466966_0201510
256 Ga0466961_0025240
257 Ga0466961_0124978
258 Ga0466961_0140381
259 Ga0466963_0003492
260 Ga0466964_0013306
261 Ga0453684_0001037
262 Ga0453684_0262639
263 Ga0466968_0096817
264 Ga0466960_0000208
265 Ga0466960_0013492
266 Ga0466958_0006376
267 Ga0466958_0102101
268 Ga0495664_0037280
269 Ga0496101_0110544
270 Ga0496101_0280104
271 Ga0496104_0123130
272 Ga0496104_0206294
273 Ga0496105_0016995
274 Ga0496108_0191462
275 Ga0496109_0216657
276 Ga0496109_0342692
277 Ga0496110_0005560
278 Ga0496111_0024170
279 Ga0496112_0000001
280 Ga0496113_0232625
281 Ga0496114_0013643
282 Ga0496114_0310717
283 Ga0496115_0045582
284 Ga0496122_0110658
285 Ga0496124_0126484
286 Ga0496125_0000015
287 Ga0501031_0042839
288 Ga0501040_0045369
289 Ga0501041_0015112
290 Ga0501048_0028538
291 Ga0501067_0081565
292 Ga0501070_0317011
293 Ga0501072_0035281
294 Ga0501035_0136536
295 nmdc:mga08y16_177373_c1
296 Ga0495619_0353501
297 Ga0500556_0000284
298 Ga0500593_002613
299 Ga0501084_0090300
300 Ga0466962_0002109
301 2643888593
302 2644090666
303 2644320470
304 2774383723
305 2774396826
306 2809198465
307 2812349687
308 2819426629
309 2855390678
310 2857482254
311 2891969528
312 2905929085
313 2946005253
314 2977251768

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00288

GHMP_kinases_N

GHMP kinases N terminal domain

70

155

0.89

PF08544

GHMP_kinases_C

GHMP kinases C terminal

252

325

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
6cyz-assembly1.cif.gz_B mycobacterial homoserine kinase thrb in complex with amppnp 0.9011 3 298
5was-assembly1.cif.gz_A-2 corynebacterium glutamicum hydrolyzed homoserine kinase 0.8974 4 168
4rpf-assembly1.cif.gz_A crystal structure of homoserine kinase from yersinia pestis nepal516, nysgrc target 032715 0.8972 6 299
6cyz-assembly1.cif.gz_B mycobacterial homoserine kinase thrb in complex with amppnp 0.8893 3 298
4p52-assembly1.cif.gz_A crystal structure of homoserine kinase from cytophaga hutchinsonii atcc 33406, nysgrc target 032717. 0.8856 1 298
ID Description Score Start End Superfamily
af_P9WKE7_13_177_3.30.230.10 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2; 0.9218 9 167 3.30.230.10
af_Q2FYV2_4_165_3.30.230.10 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2; 0.9182 9 167 3.30.230.10
af_Q2FYV2_4_165_3.30.230.10 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2; 0.8967 9 167 3.30.230.10
af_Q4DQQ2_7_172_3.30.230.10 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2; 0.8853 8 168 3.30.230.10
af_P9WKE7_13_177_3.30.230.10 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2; 0.8838 9 167 3.30.230.10
ID Description Score Start End GO Terms
AF-V6UNJ7-F1-model_v4 deleted 0.9882 2 299
AF-B5GL70-F1-model_v4 deleted 0.988 2 246
AF-A0A5B8JML7-F1-model_v4 Homoserine kinase (HK) (HSK) (EC 2.7.1.39) 0.9879 2 299 GO:0004413
GO:0005524
GO:0005737
GO:0009088
AF-A0A1C6LXT1-F1-model_v4 Homoserine kinase (HK) (HSK) (EC 2.7.1.39) 0.9875 2 299 GO:0004413
GO:0005524
GO:0005737
GO:0009088
AF-A0A7V9JB05-F1-model_v4 Homoserine kinase 0.9868 2 128 GO:0005524
GO:0016301

Map