F226992

General Info

Members Datasets Scaffolds Average Seq Length
157 126 156 355

Family's Representative Sequence

Representative Sequence 3300006358|Ga0068871_100251964|Ga0068871_1002519642
Length 387
Sequence MSKVYAQFCVLTALPETKISGEKTQTKSMSVHFEKIRIKKINRETPECVSITFDIPQTLADRFAYKHGQHLNMRTFINGEEVRRSYSLCSSPLDNEWKVAVKKVDGGIFSSFANGVLKPGDEIELMPPMGHFFCELDAANKKSYVAFAAGSGITPVLSIIKTVLSTEPHSNFTLVYGNRNRASIIFKEELEALKNKYINRFSIIHTLSREKTDAAINHGRIDIAKCETLFTKAIDIKADEFFLCGPEEMIFAVKDYLEAHGVDKKKIHFELFTTPESKKPKVKSQKEEIDNTAKSHVTVKLDGIAFYFDMPFNSDDSVLDAATKKGADLPYSCKGGVCCTCKAKLLEGEVIMDVHWGLESEEVAEGFILTCQSHPVTEKVVIDFDIK

Samples

Sample ID Description Type Environment
1 2721755763 Pandoraea thiooxydans ATSB16 Isolate Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
5 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
8 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
9 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
10 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
11 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
12 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
13 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
14 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
15 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
16 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
17 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
18 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
19 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
20 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
21 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
22 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
23 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
24 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
25 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
26 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
27 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
28 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
29 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
30 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
31 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
32 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
33 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
34 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
35 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
36 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
37 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
38 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
39 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
40 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
41 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
42 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
43 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
45 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
46 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
47 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
48 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
49 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
50 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
51 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
52 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
53 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
54 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
55 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
56 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
57 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
58 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
74 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
75 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
76 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
77 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
78 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
79 3300044666 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1E Metagenome Unclassified
80 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
81 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
82 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
83 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
84 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
85 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
86 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
87 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
88 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
89 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
90 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
91 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
92 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
93 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
94 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
95 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
96 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
105 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
106 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
107 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
108 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
109 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
110 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
111 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
114 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
115 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
116 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
117 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
118 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
119 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
120 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
121 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
122 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
123 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
124 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
125 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
126 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.36
Metatranscriptomes 0
Isolates 0.64

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.37
Nodule 0
Rhizoplane 0
Rhizosphere 88.54
Stem 0
Stem Tuber 0
Unclassified 5.1

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10007718 3300001979 Bacteria 4350
2 JGI25406J46586_10005229 3300003203 Bacteria 6017
3 rootH1_10136031 3300003316 Bacteria 1442
4 rootH2_10223423 3300003320 Bacteria 4679
5 rootL2_10118896 3300003322 Bacteria 3610
6 Ga0065704_10079760 3300005289 Bacteria 4088
7 Ga0070658_10086271 3300005327 Bacteria 2582
8 Ga0070683_100010443 3300005329 Bacteria 7985
9 Ga0070666_10013158 3300005335 Bacteria 5243
10 Ga0070682_100011391 3300005337 Bacteria 5079
11 Ga0070682_100056948 3300005337 Bacteria 2461
12 Ga0070682_100262223 3300005337 Unclassified 1251
13 Ga0068868_100095560 3300005338 Bacteria 2399
14 Ga0070660_100112476 3300005339 Bacteria 2167
15 Ga0070661_100005112 3300005344 Bacteria 9046
16 Ga0070669_100042077 3300005353 Bacteria 3324
17 Ga0070675_100033315 3300005354 Bacteria 4176
18 Ga0070673_100069633 3300005364 Bacteria 2820
19 Ga0070673_100212578 3300005364 Bacteria 1671
20 Ga0070659_100027916 3300005366 Bacteria 4352
21 Ga0070713_100380034 3300005436 Bacteria 1316
22 Ga0070678_100046149 3300005456 Bacteria 3122
23 Ga0070681_10154065 3300005458 Bacteria 2224
24 Ga0070685_10068752 3300005466 Bacteria 2093
25 Ga0070707_100233985 3300005468 Bacteria 1788
26 Ga0070698_100001837 3300005471 Bacteria 23656
27 Ga0070699_100026050 3300005518 Bacteria 5044
28 Ga0070679_100013262 3300005530 Bacteria 7888
29 Ga0070684_100005278 3300005535 Bacteria 9889
30 Ga0070684_100063829 3300005535 Bacteria 3230
31 Ga0070697_100225284 3300005536 Bacteria 1598
32 Ga0068855_100023613 3300005563 Bacteria 7365
33 Ga0070664_100130501 3300005564 Bacteria 2207
34 Ga0068857_100061656 3300005577 Bacteria 3332
35 Ga0068854_100020245 3300005578 Bacteria 4498
36 Ga0068856_100354592 3300005614 Bacteria 1486
37 Ga0068861_100025887 3300005719 Bacteria 4261
38 Ga0068863_100258745 3300005841 Bacteria 1682
39 Ga0081539_10000389 3300005985 Bacteria 94754
40 Ga0075369_10095495 3300006186 Bacteria 1330
41 Ga0097621_100009734 3300006237 Bacteria 6995
42 Ga0068871_100004450 3300006358 Bacteria 9755
43 Ga0068871_100251964 3300006358 Bacteria 1538
44 Ga0068871_100281765 3300006358 Bacteria 1454
45 Ga0075428_100020317 3300006844 Bacteria 7355
46 Ga0075430_100072366 3300006846 Bacteria 2891
47 Ga0075431_100013305 3300006847 Bacteria 8315
48 Ga0114129_10075524 3300009147 Bacteria 4692
49 Ga0114129_10787509 3300009147 Bacteria 1214
50 Ga0105237_10002390 3300009545 Bacteria 23305
51 Ga0105239_10003986 3300010375 Bacteria 17885
52 Ga0157373_10067062 3300013100 Unclassified 2538
53 Ga0157371_10007076 3300013102 Bacteria 9122
54 Ga0157371_10040339 3300013102 Bacteria 3335
55 Ga0157369_10008137 3300013105 Bacteria 12025
56 Ga0157369_10018682 3300013105 Bacteria 7772
57 Ga0157369_10400266 3300013105 Bacteria 1424
58 Ga0157374_10003567 3300013296 Bacteria 13103
59 Ga0157374_10036316 3300013296 Bacteria 4512
60 Ga0157374_10057400 3300013296 Bacteria 3636
61 Ga0163162_10156452 3300013306 Bacteria 2399
62 Ga0163162_10196229 3300013306 Bacteria 2147
63 Ga0163162_10229038 3300013306 Bacteria 1989
64 Ga0157372_10021264 3300013307 Bacteria 7008
65 Ga0157372_10074533 3300013307 Bacteria 3827
66 Ga0157372_10160237 3300013307 Bacteria 2600
67 Ga0157372_10634739 3300013307 Bacteria 1244
68 Ga0157375_10010650 3300013308 Bacteria 8097
69 Ga0163163_10534316 3300014325 Bacteria 1235
70 Ga0157379_10049602 3300014968 Bacteria 3749
71 Ga0157376_10026951 3300014969 Bacteria 4549
72 Ga0157376_10072130 3300014969 Bacteria 2936
73 Ga0163161_10273780 3300017792 Bacteria 1322
74 Ga0213876_10017802 3300021384 Bacteria 3749
75 Ga0207705_10047644 3300025909 Bacteria 3082
76 Ga0207705_10215349 3300025909 Bacteria 1457
77 Ga0207707_10125855 3300025912 Bacteria 2241
78 Ga0207671_10019000 3300025914 Bacteria 5265
79 Ga0207657_10002230 3300025919 Bacteria 21009
80 Ga0207652_10025049 3300025921 Bacteria 4957
81 Ga0207646_10234242 3300025922 Bacteria 1659
82 Ga0207681_10175419 3300025923 Unclassified 1628
83 Ga0207690_10046259 3300025932 Bacteria 2881
84 Ga0207706_10009008 3300025933 Bacteria 9185
85 Ga0207679_10096167 3300025945 Bacteria 2304
86 Ga0207667_10173448 3300025949 Bacteria 2216
87 Ga0207674_10057289 3300026116 Bacteria 3950
88 Ga0207674_10091274 3300026116 Unclassified 3036
89 Ga0207675_100016303 3300026118 Bacteria 6937
90 Ga0207683_10134585 3300026121 Bacteria 2225
91 Ga0207698_10120451 3300026142 Bacteria 2220
92 Ga0207698_10160671 3300026142 Bacteria 1964
93 Ga0307511_10008209 3300030521 Bacteria 10448
94 Ga0265313_10056398 3300031595 Bacteria 1858
95 Ga0307508_10003598 3300031616 Bacteria 15582
96 Ga0373937_0140137 3300036401 Bacteria 2262
97 Ga0436365_0442056 3300039437 Bacteria 15370
98 Ga0466972_0000051 3300044658 Bacteria 114011
99 Ga0466972_0008309 3300044658 Bacteria 5202
100 Ga0466972_0014272 3300044658 Bacteria 3981
101 Ga0466977_0000185 3300044666 Bacteria 16118
102 Ga0466965_0124242 3300044683 Bacteria 1334
103 Ga0466966_0060782 3300044684 Bacteria 2384
104 Ga0466966_0075107 3300044684 Bacteria 2112
105 Ga0466961_0007002 3300044693 Bacteria 7175
106 Ga0466961_0039525 3300044693 Bacteria 3024
107 Ga0466963_0000148 3300044694 Bacteria 27894
108 Ga0453684_0022684 3300044712 Bacteria 9300
109 Ga0453684_0430288 3300044712 Bacteria 1472
110 Ga0466971_0071002 3300044719 Bacteria 1581
111 Ga0466970_0000446 3300044765 Bacteria 20265
112 Ga0495629_0085549 3300046459 Bacteria 2200
113 Ga0495580_0011073 3300046472 Bacteria 6991
114 Ga0495639_0079550 3300046475 Bacteria 1525
115 Ga0495630_0193165 3300046517 Bacteria 1553
116 Ga0495588_0187081 3300046674 Bacteria 1094
117 Ga0495658_0007690 3300046683 Bacteria 5340
118 Ga0495674_0049323 3300047319 Bacteria 3721
119 Ga0495674_0192423 3300047319 Bacteria 1695
120 Ga0495672_0008198 3300047320 Bacteria 7749
121 Ga0495684_0151456 3300047471 Bacteria 1734
122 Ga0501031_0011291 3300049568 Bacteria 5819
123 Ga0501031_0044448 3300049568 Bacteria 2899
124 Ga0501036_0010318 3300049572 Bacteria 7708
125 Ga0501037_0052773 3300049573 Bacteria 2973
126 Ga0501037_0157776 3300049573 Bacteria 1618
127 Ga0501039_0048189 3300049575 Bacteria 3294
128 Ga0501040_0020087 3300049576 Bacteria 4450
129 Ga0501043_0193831 3300049579 Unclassified 1579
130 Ga0501046_0001757 3300049580 Bacteria 20707
131 Ga0501046_0254371 3300049580 Bacteria 1292
132 Ga0501048_0042286 3300049582 Bacteria 3263
133 Ga0501072_0138523 3300049588 Bacteria 1940
134 Ga0501073_0016782 3300049589 Bacteria 5305
135 Ga0501074_0002925 3300049590 Bacteria 11992
136 Ga0501076_0005518 3300049592 Bacteria 9114
137 Ga0501223_000889 3300049663 Bacteria 7089
138 Ga0501080_0180060 3300049742 Unclassified 1945
139 Ga0501083_0006365 3300049744 Bacteria 8367
140 Ga0501035_0212601 3300049822 Unclassified 1654
141 Ga0501044_0074997 3300049823 Bacteria 3435
142 Ga0501045_0268624 3300049824 Unclassified 1270
143 nmdc:mga0qj67_21912_c1 3300050509 Bacteria 4903
144 nmdc:mga06r32_96391_c1 3300050510 Bacteria 2897
145 nmdc:mga0sz30_84183_c1 3300050516 Bacteria 1379
146 Ga0495619_0020729 3300053085 Bacteria 4192
147 Ga0500646_0001677 3300053090 Bacteria 5855
148 Ga0500583_0067979 3300053092 Bacteria 1698
149 Ga0500655_003007 3300053133 Bacteria 3061
150 Ga0500568_0000909 3300053139 Bacteria 20440
151 Ga0500604_0002872 3300053151 Bacteria 4668
152 Ga0500604_0005203 3300053151 Bacteria 3438
153 Ga0500616_0097605 3300053153 Bacteria 1442
154 Ga0500611_000001 3300053727 Bacteria 385744
155 Ga0501082_0278112 3300060353 Unclassified 1457
156 Ga0466962_0046616 3300061719 Bacteria 2071

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046674 Ga0495588_0187081 Ga0495588_0187081_139_1020 290
2 3300053727 Ga0500611_000001 Ga0500611_000001_247343_248296 314
3 3300005335 Ga0070666_10013158 Ga0070666_100131587 335
4 3300005337 Ga0070682_100011391 Ga0070682_1000113912 335
5 3300005364 Ga0070673_100212578 Ga0070673_1002125781 335
6 3300005456 Ga0070678_100046149 Ga0070678_1000461492 335
7 3300005578 Ga0068854_100020245 Ga0068854_1000202453 335
8 3300005614 Ga0068856_100354592 Ga0068856_1003545922 335
9 3300006237 Ga0097621_100009734 Ga0097621_1000097343 335
10 3300006358 Ga0068871_100004450 Ga0068871_1000044508 335
11 3300026121 Ga0207683_10134585 Ga0207683_101345851 335
12 3300005327 Ga0070658_10086271 Ga0070658_100862712 337
13 3300005329 Ga0070683_100010443 Ga0070683_1000104433 337
14 3300005338 Ga0068868_100095560 Ga0068868_1000955602 337
15 3300005339 Ga0070660_100112476 Ga0070660_1001124762 337
16 3300005344 Ga0070661_100005112 Ga0070661_1000051125 337
17 3300005354 Ga0070675_100033315 Ga0070675_1000333154 337
18 3300005366 Ga0070659_100027916 Ga0070659_1000279164 337
19 3300005458 Ga0070681_10154065 Ga0070681_101540652 337
20 3300005530 Ga0070679_100013262 Ga0070679_1000132623 337
21 3300005535 Ga0070684_100005278 Ga0070684_1000052785 337
22 3300005563 Ga0068855_100023613 Ga0068855_1000236134 337
23 3300005577 Ga0068857_100061656 Ga0068857_1000616564 337
24 3300013102 Ga0157371_10007076 Ga0157371_100070764 337
25 3300013105 Ga0157369_10008137 Ga0157369_100081374 337
26 3300013296 Ga0157374_10003567 Ga0157374_1000356711 337
27 3300025909 Ga0207705_10047644 Ga0207705_100476442 337
28 3300025912 Ga0207707_10125855 Ga0207707_101258552 337
29 3300025919 Ga0207657_10002230 Ga0207657_1000223010 337
30 3300025921 Ga0207652_10025049 Ga0207652_100250492 337
31 3300025932 Ga0207690_10046259 Ga0207690_100462593 337
32 3300025933 Ga0207706_10009008 Ga0207706_100090082 337
33 3300025949 Ga0207667_10173448 Ga0207667_101734481 337
34 3300026116 Ga0207674_10091274 Ga0207674_100912743 337
35 3300026142 Ga0207698_10160671 Ga0207698_101606712 337
36 3300044683 Ga0466965_0124242 Ga0466965_0124242_13_1053 339
37 3300049580 Ga0501046_0254371 Ga0501046_0254371_185_1210 340
38 3300053151 Ga0500604_0005203 Ga0500604_0005203_530_1621 341
39 3300031616 Ga0307508_10003598 Ga0307508_100035989 347
40 3300044658 Ga0466972_0008309 Ga0466972_0008309_725_1789 347
41 3300044658 Ga0466972_0014272 Ga0466972_0014272_516_1580 347
42 3300044684 Ga0466966_0060782 Ga0466966_0060782_263_1327 347
43 3300044693 Ga0466961_0039525 Ga0466961_0039525_650_1714 347
44 3300044719 Ga0466971_0071002 Ga0466971_0071002_226_1290 347
45 3300050516 nmdc:mga0sz30_84183_c1 nmdc:mga0sz30_84183_c1_230_1300 347
46 3300061719 Ga0466962_0046616 Ga0466962_0046616_995_2059 347
47 3300049573 Ga0501037_0052773 Ga0501037_0052773_251_1303 349
48 3300044684 Ga0466966_0075107 Ga0466966_0075107_551_1672 352
49 3300044694 Ga0466963_0000148 Ga0466963_0000148_12736_13893 352
50 3300049573 Ga0501037_0157776 Ga0501037_0157776_62_1183 352
51 3300005436 Ga0070713_100380034 Ga0070713_1003800341 353
52 iso_pu_bacteria 2721755763 2723879715 353
53 3300003316 rootH1_10136031 rootH1_101360311 355
54 3300003322 rootL2_10118896 rootL2_101188962 355
55 3300005289 Ga0065704_10079760 Ga0065704_100797601 355
56 3300030521 Ga0307511_10008209 Ga0307511_100082095 355
57 3300049568 Ga0501031_0011291 Ga0501031_0011291_2793_3863 355
58 3300049568 Ga0501031_0044448 Ga0501031_0044448_929_1999 355
59 3300049576 Ga0501040_0020087 Ga0501040_0020087_777_1847 355
60 3300049588 Ga0501072_0138523 Ga0501072_0138523_379_1449 355
61 3300049592 Ga0501076_0005518 Ga0501076_0005518_4771_5841 355
62 3300049663 Ga0501223_000889 Ga0501223_000889_3531_4601 355
63 3300053092 Ga0500583_0067979 Ga0500583_0067979_333_1484 355
64 3300053133 Ga0500655_003007 Ga0500655_003007_685_1851 355
65 3300053151 Ga0500604_0002872 Ga0500604_0002872_820_1980 355
66 3300005337 Ga0070682_100056948 Ga0070682_1000569483 356
67 3300006186 Ga0075369_10095495 Ga0075369_100954951 356
68 3300013100 Ga0157373_10067062 Ga0157373_100670622 356
69 3300013102 Ga0157371_10040339 Ga0157371_100403392 356
70 3300013105 Ga0157369_10018682 Ga0157369_100186825 356
71 3300013307 Ga0157372_10021264 Ga0157372_100212646 356
72 3300013307 Ga0157372_10160237 Ga0157372_101602372 356
73 3300013307 Ga0157372_10634739 Ga0157372_106347392 356
74 3300026142 Ga0207698_10120451 Ga0207698_101204512 356
75 3300044666 Ga0466977_0000185 Ga0466977_0000185_4659_5837 356
76 3300044693 Ga0466961_0007002 Ga0466961_0007002_2015_3103 356
77 3300053153 Ga0500616_0097605 Ga0500616_0097605_86_1282 356
78 3300003203 JGI25406J46586_10005229 JGI25406J46586_100052294 357
79 3300003320 rootH2_10223423 rootH2_102234232 357
80 3300005337 Ga0070682_100262223 Ga0070682_1002622231 357
81 3300005466 Ga0070685_10068752 Ga0070685_100687523 357
82 3300005535 Ga0070684_100063829 Ga0070684_1000638293 357
83 3300005564 Ga0070664_100130501 Ga0070664_1001305013 357
84 3300005985 Ga0081539_10000389 Ga0081539_1000038959 357
85 3300006358 Ga0068871_100251964 Ga0068871_1002519642 357
86 3300006358 Ga0068871_100281765 Ga0068871_1002817652 357
87 3300013296 Ga0157374_10036316 Ga0157374_100363163 357
88 3300013306 Ga0163162_10156452 Ga0163162_101564523 357
89 3300013306 Ga0163162_10196229 Ga0163162_101962292 357
90 3300021384 Ga0213876_10017802 Ga0213876_100178022 357
91 3300025909 Ga0207705_10215349 Ga0207705_102153491 357
92 3300025945 Ga0207679_10096167 Ga0207679_100961673 357
93 3300026116 Ga0207674_10057289 Ga0207674_100572895 357
94 3300031595 Ga0265313_10056398 Ga0265313_100563982 357
95 3300039437 Ga0436365_0442056 Ga0436365_0442056_13546_14619 357
96 3300044712 Ga0453684_0022684 Ga0453684_0022684_1691_2767 357
97 3300044712 Ga0453684_0430288 Ga0453684_0430288_377_1453 357
98 3300047319 Ga0495674_0192423 Ga0495674_0192423_355_1428 357
99 3300053139 Ga0500568_0000909 Ga0500568_0000909_8317_9453 357
100 3300001979 JGI24740J21852_10007718 JGI24740J21852_100077183 358
101 3300005353 Ga0070669_100042077 Ga0070669_1000420773 358
102 3300005364 Ga0070673_100069633 Ga0070673_1000696331 358
103 3300005468 Ga0070707_100233985 Ga0070707_1002339852 358
104 3300005471 Ga0070698_100001837 Ga0070698_10000183711 358
105 3300005518 Ga0070699_100026050 Ga0070699_1000260503 358
106 3300005536 Ga0070697_100225284 Ga0070697_1002252841 358
107 3300005719 Ga0068861_100025887 Ga0068861_1000258873 358
108 3300005841 Ga0068863_100258745 Ga0068863_1002587452 358
109 3300006844 Ga0075428_100020317 Ga0075428_1000203178 358
110 3300006846 Ga0075430_100072366 Ga0075430_1000723662 358
111 3300006847 Ga0075431_100013305 Ga0075431_1000133054 358
112 3300009147 Ga0114129_10075524 Ga0114129_100755244 358
113 3300009147 Ga0114129_10787509 Ga0114129_107875091 358
114 3300009545 Ga0105237_10002390 Ga0105237_100023907 358
115 3300010375 Ga0105239_10003986 Ga0105239_1000398614 358
116 3300013105 Ga0157369_10400266 Ga0157369_104002662 358
117 3300013296 Ga0157374_10057400 Ga0157374_100574004 358
118 3300013306 Ga0163162_10229038 Ga0163162_102290382 358
119 3300013307 Ga0157372_10074533 Ga0157372_100745332 358
120 3300013308 Ga0157375_10010650 Ga0157375_100106506 358
121 3300014325 Ga0163163_10534316 Ga0163163_105343162 358
122 3300014968 Ga0157379_10049602 Ga0157379_100496022 358
123 3300014969 Ga0157376_10026951 Ga0157376_100269512 358
124 3300014969 Ga0157376_10072130 Ga0157376_100721304 358
125 3300017792 Ga0163161_10273780 Ga0163161_102737801 358
126 3300025914 Ga0207671_10019000 Ga0207671_100190004 358
127 3300025922 Ga0207646_10234242 Ga0207646_102342422 358
128 3300025923 Ga0207681_10175419 Ga0207681_101754192 358
129 3300026118 Ga0207675_100016303 Ga0207675_1000163034 358
130 3300036401 Ga0373937_0140137 Ga0373937_0140137_614_1699 358
131 3300044658 Ga0466972_0000051 Ga0466972_0000051_8830_9906 358
132 3300044765 Ga0466970_0000446 Ga0466970_0000446_4381_5457 358
133 3300046459 Ga0495629_0085549 Ga0495629_0085549_894_1979 358
134 3300046472 Ga0495580_0011073 Ga0495580_0011073_4682_5767 358
135 3300046475 Ga0495639_0079550 Ga0495639_0079550_340_1425 358
136 3300046517 Ga0495630_0193165 Ga0495630_0193165_202_1287 358
137 3300046683 Ga0495658_0007690 Ga0495658_0007690_166_1251 358
138 3300047319 Ga0495674_0049323 Ga0495674_0049323_779_1864 358
139 3300047320 Ga0495672_0008198 Ga0495672_0008198_1116_2207 358
140 3300047471 Ga0495684_0151456 Ga0495684_0151456_161_1246 358
141 3300049572 Ga0501036_0010318 Ga0501036_0010318_2179_3261 358
142 3300049575 Ga0501039_0048189 Ga0501039_0048189_681_1763 358
143 3300049579 Ga0501043_0193831 Ga0501043_0193831_397_1479 358
144 3300049580 Ga0501046_0001757 Ga0501046_0001757_11479_12561 358
145 3300049582 Ga0501048_0042286 Ga0501048_0042286_703_1785 358
146 3300049589 Ga0501073_0016782 Ga0501073_0016782_250_1332 358
147 3300049590 Ga0501074_0002925 Ga0501074_0002925_9215_10297 358
148 3300049742 Ga0501080_0180060 Ga0501080_0180060_763_1845 358
149 3300049744 Ga0501083_0006365 Ga0501083_0006365_6365_7447 358
150 3300049822 Ga0501035_0212601 Ga0501035_0212601_283_1365 358
151 3300049823 Ga0501044_0074997 Ga0501044_0074997_1564_2646 358
152 3300049824 Ga0501045_0268624 Ga0501045_0268624_137_1219 358
153 3300050509 nmdc:mga0qj67_21912_c1 nmdc:mga0qj67_21912_c1_3702_4781 358
154 3300050510 nmdc:mga06r32_96391_c1 nmdc:mga06r32_96391_c1_820_1899 358
155 3300053085 Ga0495619_0020729 Ga0495619_0020729_1315_2400 358
156 3300053090 Ga0500646_0001677 Ga0500646_0001677_792_1874 358
157 3300060353 Ga0501082_0278112 Ga0501082_0278112_100_1182 358

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00175

NAD_binding_1

Oxidoreductase NAD-binding domain

147

255

0.97

PF00111

Fer2

2Fe-2S iron-sulfur cluster binding domain

308

376

0.91

PF00970

FAD_binding_6

Oxidoreductase FAD-binding domain

35

133

0.83

PF08030

NAD_binding_6

Ferric reductase NAD binding domain

142

305

0.68

Structural Annotation

Top 5 Hits

ID Description Score Start End
1off-assembly1.cif.gz_A 2fe-2s ferredoxin from synechocystis sp. pcc 6803 0.9431 266 354
4zhp-assembly1.cif.gz_A the crystal structure of potato ferredoxin i with 2fe-2s cluster 0.9366 266 354
1awd-assembly1.cif.gz_A-2 ferredoxin [2fe-2s] oxidized form from chlorella fusca 0.9345 268 354
3w5v-assembly2.cif.gz_B cross-linked complex between ferredoxin and ferredoxin-nadp+ reductase 0.9343 266 354
1frr-assembly2.cif.gz_B crystal structure of [2fe-2s] ferredoxin i from equisetum arvense at 1.8 angstroms resolution 0.9333 267 354
ID Description Score Start End Superfamily
af_P71846_447_583_3.40.50.80 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.9709 114 244 3.40.50.80
af_P71846_339_440_2.40.30.10 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.9697 4 104 2.40.30.10
af_P76081_101_242_3.40.50.80 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.9694 102 242 3.40.50.80
af_P76081_101_242_3.40.50.80 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.9562 102 242 3.40.50.80
af_P71846_339_440_2.40.30.10 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.9513 4 104 2.40.30.10
ID Description Score Start End GO Terms
AF-A0A3B8YF48-F1-model_v4 deleted 0.9959 4 93
AF-A0A4V1TLK3-F1-model_v4 deleted 0.9941 3 171
AF-A0A2N2ZKM1-F1-model_v4 FAD-binding FR-type domain-containing protein 0.9904 4 86 GO:0016491
GO:0050660
GO:0051537
AF-A0A6B0ZA13-F1-model_v4 2Fe-2S iron-sulfur cluster binding domain-containing protein 0.9852 266 358 GO:0046872
GO:0051537
AF-A0A4V1TLK3-F1-model_v4 deleted 0.9825 3 171

Feature Viewer

pLDDT pTM Quality
88.25 0.79 High
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Predicted Structure (AlphaFold2)

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