F225826

General Info

Members Datasets Scaffolds Average Seq Length
156 113 312 228

Family's Representative Sequence

Representative Sequence 3300049575|Ga0501039_0312215|Ga0501039_0312215_403_1188
Length 261
Sequence MRIDDRKHACSLSRALLSNVCNTSGMARRTAASIRARVRAEMTEEIKAVARRHLAAEGANLSLRAVAREVGMVSSAVYRYFGSRDELLTALIIDAYNSMGEAAEKADAAVTDRADLLGRWLAVAHALRAWSLARPHEYALLYGSPVPGYAAPRDTIGPASRPVVVLGTILVEARAAGRLDDVAGARDAPLPPDLRAELRAGADAVAAGLGGPVMARAMIAWTELFGAISFELFGRLNNLIDQRQAWFDHQMRAMAAFVGIR

Samples

Sample ID Description Type Environment
1 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
7 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
8 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
9 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
14 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
15 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
16 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
17 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
18 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
19 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
20 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
21 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
22 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
23 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
24 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
25 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
26 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
28 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
29 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
30 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
31 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
32 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
42 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
43 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
44 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
45 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
46 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
47 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
48 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
49 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
50 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
51 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
52 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
53 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
54 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
55 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
56 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
57 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
58 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
59 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
60 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
61 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
62 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
63 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
64 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
65 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
66 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
67 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
68 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
69 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
70 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
71 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
72 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
73 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
74 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
75 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
76 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
77 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
78 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
79 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
81 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
86 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
87 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
88 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
89 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
90 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
91 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
92 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
93 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
94 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
95 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
97 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
98 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
99 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
100 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
101 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
102 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
103 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
104 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
105 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
106 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
107 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
108 2515154129 Salinispora pacifica CNS103 Isolate Rhizosphere
109 2523231044 Gordonia rhizosphera NBRC 16068 Isolate Rhizosphere
110 2795385472 Herbihabitans rhizosphaerae DSM 101727 Isolate Rhizosphere
111 2861520306 Phytomonospora endophytica DSM 45386 Isolate Unclassified
112 2905926851 Arthrobacter sedimenti MIC A30 Isolate Rhizosphere
113 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.51
Metatranscriptomes 0.64
Isolates 3.85

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.77
Nodule 0
Rhizoplane 5.77
Rhizosphere 83.33
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501039_0312215 3300049575 Bacteria 1236
2 JGI25406J46586_10002149 3300003203 Bacteria 9327
3 JGI25406J46586_10046631 3300003203 Bacteria 1483
4 rootH1_10089313 3300003316 Bacteria 2328
5 Ga0070683_100295582 3300005329 Bacteria 1540
6 Ga0068868_100404862 3300005338 Bacteria 1178
7 Ga0070674_100401543 3300005356 Bacteria 1120
8 Ga0070714_100347357 3300005435 Bacteria 1393
9 Ga0070714_100738458 3300005435 Bacteria 951
10 Ga0070706_100304765 3300005467 Bacteria 1486
11 Ga0070707_100113489 3300005468 Bacteria 2629
12 Ga0070698_100152144 3300005471 Bacteria 2261
13 Ga0070684_100110062 3300005535 Bacteria 2469
14 Ga0070665_100264289 3300005548 Bacteria 1722
15 Ga0068855_100324779 3300005563 Bacteria 1700
16 Ga0068856_100030361 3300005614 Bacteria 5284
17 Ga0068856_100353970 3300005614 Bacteria 1487
18 Ga0081455_10118398 3300005937 Bacteria 2091
19 Ga0081455_10153091 3300005937 Bacteria 1776
20 Ga0081540_1002444 3300005983 Bacteria 15127
21 Ga0081539_10000441 3300005985 Bacteria 88174
22 Ga0081539_10008248 3300005985 Bacteria 9153
23 Ga0075363_100071123 3300006048 Bacteria 1890
24 Ga0075363_100158744 3300006048 Bacteria 1280
25 Ga0075364_10384968 3300006051 Bacteria 957
26 Ga0075370_10015924 3300006353 Bacteria 4036
27 Ga0075428_100001798 3300006844 Bacteria 22943
28 Ga0075428_100013907 3300006844 Bacteria 8963
29 Ga0075428_100097460 3300006844 Bacteria 3206
30 Ga0075428_100263974 3300006844 Bacteria 1854
31 Ga0075430_100028444 3300006846 Bacteria 4749
32 Ga0075431_100081536 3300006847 Bacteria 3340
33 Ga0075434_100683220 3300006871 Bacteria 1044
34 Ga0075429_100011464 3300006880 Bacteria 7683
35 Ga0075429_100025494 3300006880 Bacteria 5131
36 Ga0075429_100368880 3300006880 Bacteria 1257
37 Ga0114129_10000096 3300009147 Bacteria 85256
38 Ga0114129_10155447 3300009147 Bacteria 3128
39 Ga0114129_10517232 3300009147 Bacteria 1557
40 Ga0157369_10116796 3300013105 Bacteria 2833
41 Ga0157372_10179239 3300013307 Bacteria 2453
42 Ga0163163_10427320 3300014325 Bacteria 1384
43 Ga0206354_10876564 3300020081 Bacteria 3546
44 Ga0228598_1006991 3300024227 Bacteria 2318
45 Ga0207705_10014292 3300025909 Bacteria 5716
46 Ga0207693_10426994 3300025915 Bacteria 1036
47 Ga0207646_10170792 3300025922 Bacteria 1963
48 Ga0207659_10401615 3300025926 Bacteria 1146
49 Ga0207661_10597233 3300025944 Bacteria 1013
50 Ga0207667_10099486 3300025949 Bacteria 3000
51 Ga0207677_10272798 3300026023 Bacteria 1385
52 Ga0207702_10036925 3300026078 Bacteria 4087
53 Ga0268266_10301364 3300028379 Bacteria 1495
54 Ga0307515_10009602 3300028794 Bacteria 18686
55 Ga0307515_10143712 3300028794 Bacteria 2541
56 Ga0307511_10118321 3300030521 Bacteria 1651
57 Ga0307512_10024677 3300030522 Bacteria 5344
58 Ga0307513_10039180 3300031456 Bacteria 5255
59 Ga0316575_10116566 3300031665 Bacteria 1091
60 Ga0316579_10025080 3300031691 Bacteria 2689
61 Ga0316579_10052151 3300031691 Bacteria 1915
62 Ga0316579_10186903 3300031691 Bacteria 1002
63 Ga0316576_10107809 3300031727 Bacteria 2086
64 Ga0316578_10016652 3300031728 Bacteria 3983
65 Ga0316578_10043548 3300031728 Bacteria 2607
66 Ga0307516_10110772 3300031730 Bacteria 2548
67 Ga0307405_10200096 3300031731 Bacteria 1450
68 Ga0316577_10042622 3300031733 Bacteria 2539
69 Ga0316577_10086812 3300031733 Bacteria 1751
70 Ga0307409_100112901 3300031995 Bacteria 2283
71 Ga0316585_10049961 3300032137 Bacteria 1342
72 Ga0316580_10016532 3300032139 Bacteria 2265
73 Ga0316574_0000784 3300035398 Bacteria 13746
74 Ga0316574_0153555 3300035398 Bacteria 1483
75 Ga0316582_0060764 3300036647 Bacteria 2423
76 Ga0316582_0078225 3300036647 Bacteria 2154
77 Ga0316584_0003175 3300036712 Bacteria 10624
78 Ga0316584_0174938 3300036712 Bacteria 1590
79 Ga0316584_0193783 3300036712 Bacteria 1501
80 Ga0439448_0004897 3300042005 Bacteria 3799
81 Ga0466969_0007031 3300044656 Bacteria 5981
82 Ga0466972_0020008 3300044658 Bacteria 3346
83 Ga0466966_0005150 3300044684 Bacteria 8591
84 Ga0466966_0043328 3300044684 Bacteria 2885
85 Ga0466966_0117628 3300044684 Bacteria 1635
86 Ga0466966_0302926 3300044684 Bacteria 960
87 Ga0466961_0003853 3300044693 Bacteria 9373
88 Ga0466961_0014317 3300044693 Bacteria 5091
89 Ga0466964_0068397 3300044706 Bacteria 1495
90 Ga0466971_0063405 3300044719 Bacteria 1673
91 Ga0466970_0032284 3300044765 Bacteria 2766
92 Ga0466970_0411538 3300044765 Bacteria 772
93 Ga0466959_0001937 3300045049 Bacteria 13034
94 Ga0466959_0009580 3300045049 Bacteria 6891
95 Ga0466959_0030443 3300045049 Bacteria 3997
96 Ga0466959_0047349 3300045049 Bacteria 3162
97 Ga0466967_0076666 3300045976 Bacteria 3008
98 Ga0466967_0373594 3300045976 Bacteria 1383
99 Ga0466967_0506690 3300045976 Bacteria 1185
100 Ga0495629_0395300 3300046459 Bacteria 940
101 Ga0495652_0465722 3300046529 Bacteria 882
102 Ga0495669_0098635 3300046684 Bacteria 1355
103 Ga0495672_0002140 3300047320 Bacteria 18503
104 Ga0496108_0036728 3300048911 Bacteria 4077
105 Ga0496109_0004796 3300048912 Bacteria 11290
106 Ga0496109_0858192 3300048912 Bacteria 846
107 Ga0496110_0069269 3300048913 Bacteria 3124
108 Ga0496111_0071677 3300048914 Bacteria 2522
109 Ga0496112_0179335 3300048915 Bacteria 2082
110 Ga0496113_0044443 3300048916 Bacteria 3291
111 Ga0496113_0354342 3300048916 Bacteria 1177
112 Ga0496114_0007622 3300048917 Bacteria 8559
113 Ga0501031_0129973 3300049568 Bacteria 1645
114 Ga0501036_0338668 3300049572 Bacteria 1256
115 Ga0501038_0015091 3300049574 Bacteria 7031
116 Ga0501039_0077500 3300049575 Bacteria 2585
117 Ga0501040_0005444 3300049576 Bacteria 8239
118 Ga0501040_0059254 3300049576 Bacteria 2630
119 Ga0501042_0196262 3300049578 Bacteria 1456
120 Ga0501043_0206440 3300049579 Bacteria 1523
121 Ga0501068_0003071 3300049584 Bacteria 8917
122 Ga0501069_0136091 3300049585 Bacteria 1408
123 Ga0501070_0435867 3300049586 Bacteria 1058
124 Ga0501071_0006387 3300049587 Bacteria 7651
125 Ga0501072_0231438 3300049588 Bacteria 1472
126 Ga0501074_0000482 3300049590 Bacteria 24237
127 Ga0501075_0017622 3300049591 Bacteria 5158
128 Ga0501075_0079258 3300049591 Bacteria 2486
129 Ga0501076_0144353 3300049592 Bacteria 1935
130 Ga0501079_0018529 3300049741 Bacteria 5319
131 Ga0501081_0025262 3300049743 Bacteria 3995
132 Ga0501081_0338201 3300049743 Bacteria 1108
133 Ga0501035_0179775 3300049822 Bacteria 1823
134 Ga0501045_0035896 3300049824 Bacteria 3599
135 nmdc:mga03n38_13948_c1 3300050490 Bacteria 3067
136 nmdc:mga00v17_372175_c1 3300050491 Bacteria 929
137 nmdc:mga07m45_17161_c1 3300050496 Bacteria 3882
138 nmdc:mga05p37_238543_c1 3300050507 Bacteria 2188
139 nmdc:mga05p37_45594_c1 3300050507 Bacteria 5391
140 nmdc:mga05p37_735_c1 3300050507 Bacteria 36324
141 nmdc:mga09592_121_c1 3300050508 Bacteria 49530
142 nmdc:mga09592_183577_c1 3300050508 Bacteria 1810
143 nmdc:mga09592_367629_c1 3300050508 Bacteria 1244
144 nmdc:mga0qj67_132_c1 3300050509 Bacteria 49532
145 nmdc:mga0qj67_1664_c1 3300050509 Bacteria 15670
146 nmdc:mga06r32_355_c1 3300050510 Bacteria 38363
147 Ga0500644_0043200 3300053088 Bacteria 1507
148 Ga0500577_0002606 3300053142 Bacteria 4620
149 Ga0501084_0006640 3300054114 Bacteria 9518
150 Ga0530510_0025056 3300061734 Bacteria 4265
151 2515720479 2515154129 Bacteria 5584369
152 2523386865 2523231044 Bacteria 6434991
153 2795797815 2795385472 Bacteria 6627535
154 2861522215 2861520306 Bacteria 8348283
155 2905928383 2905926851 Bacteria 4423176
156 2966925074 2966924647 Bacteria 3268643
157 Ga0501039_0312215
158 JGI25406J46586_10002149
159 JGI25406J46586_10046631
160 rootH1_10089313
161 Ga0070683_100295582
162 Ga0068868_100404862
163 Ga0070674_100401543
164 Ga0070714_100347357
165 Ga0070714_100738458
166 Ga0070706_100304765
167 Ga0070707_100113489
168 Ga0070698_100152144
169 Ga0070684_100110062
170 Ga0070665_100264289
171 Ga0068855_100324779
172 Ga0068856_100030361
173 Ga0068856_100353970
174 Ga0081455_10118398
175 Ga0081455_10153091
176 Ga0081540_1002444
177 Ga0081539_10000441
178 Ga0081539_10008248
179 Ga0075363_100071123
180 Ga0075363_100158744
181 Ga0075364_10384968
182 Ga0075370_10015924
183 Ga0075428_100001798
184 Ga0075428_100013907
185 Ga0075428_100097460
186 Ga0075428_100263974
187 Ga0075430_100028444
188 Ga0075431_100081536
189 Ga0075434_100683220
190 Ga0075429_100011464
191 Ga0075429_100025494
192 Ga0075429_100368880
193 Ga0114129_10000096
194 Ga0114129_10155447
195 Ga0114129_10517232
196 Ga0157369_10116796
197 Ga0157372_10179239
198 Ga0163163_10427320
199 Ga0206354_10876564
200 Ga0228598_1006991
201 Ga0207705_10014292
202 Ga0207693_10426994
203 Ga0207646_10170792
204 Ga0207659_10401615
205 Ga0207661_10597233
206 Ga0207667_10099486
207 Ga0207677_10272798
208 Ga0207702_10036925
209 Ga0268266_10301364
210 Ga0307515_10009602
211 Ga0307515_10143712
212 Ga0307511_10118321
213 Ga0307512_10024677
214 Ga0307513_10039180
215 Ga0316575_10116566
216 Ga0316579_10025080
217 Ga0316579_10052151
218 Ga0316579_10186903
219 Ga0316576_10107809
220 Ga0316578_10016652
221 Ga0316578_10043548
222 Ga0307516_10110772
223 Ga0307405_10200096
224 Ga0316577_10042622
225 Ga0316577_10086812
226 Ga0307409_100112901
227 Ga0316585_10049961
228 Ga0316580_10016532
229 Ga0316574_0000784
230 Ga0316574_0153555
231 Ga0316582_0060764
232 Ga0316582_0078225
233 Ga0316584_0003175
234 Ga0316584_0174938
235 Ga0316584_0193783
236 Ga0439448_0004897
237 Ga0466969_0007031
238 Ga0466972_0020008
239 Ga0466966_0005150
240 Ga0466966_0043328
241 Ga0466966_0117628
242 Ga0466966_0302926
243 Ga0466961_0003853
244 Ga0466961_0014317
245 Ga0466964_0068397
246 Ga0466971_0063405
247 Ga0466970_0032284
248 Ga0466970_0411538
249 Ga0466959_0001937
250 Ga0466959_0009580
251 Ga0466959_0030443
252 Ga0466959_0047349
253 Ga0466967_0076666
254 Ga0466967_0373594
255 Ga0466967_0506690
256 Ga0495629_0395300
257 Ga0495652_0465722
258 Ga0495669_0098635
259 Ga0495672_0002140
260 Ga0496108_0036728
261 Ga0496109_0004796
262 Ga0496109_0858192
263 Ga0496110_0069269
264 Ga0496111_0071677
265 Ga0496112_0179335
266 Ga0496113_0044443
267 Ga0496113_0354342
268 Ga0496114_0007622
269 Ga0501031_0129973
270 Ga0501036_0338668
271 Ga0501038_0015091
272 Ga0501039_0077500
273 Ga0501040_0005444
274 Ga0501040_0059254
275 Ga0501042_0196262
276 Ga0501043_0206440
277 Ga0501068_0003071
278 Ga0501069_0136091
279 Ga0501070_0435867
280 Ga0501071_0006387
281 Ga0501072_0231438
282 Ga0501074_0000482
283 Ga0501075_0017622
284 Ga0501075_0079258
285 Ga0501076_0144353
286 Ga0501079_0018529
287 Ga0501081_0025262
288 Ga0501081_0338201
289 Ga0501035_0179775
290 Ga0501045_0035896
291 nmdc:mga03n38_13948_c1
292 nmdc:mga00v17_372175_c1
293 nmdc:mga07m45_17161_c1
294 nmdc:mga05p37_238543_c1
295 nmdc:mga05p37_45594_c1
296 nmdc:mga05p37_735_c1
297 nmdc:mga09592_121_c1
298 nmdc:mga09592_183577_c1
299 nmdc:mga09592_367629_c1
300 nmdc:mga0qj67_132_c1
301 nmdc:mga0qj67_1664_c1
302 nmdc:mga06r32_355_c1
303 Ga0500644_0043200
304 Ga0500577_0002606
305 Ga0501084_0006640
306 Ga0530510_0025056
307 2515720479
308 2523386865
309 2795797815
310 2861522215
311 2905928383
312 2966925074

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13305

TetR_C_33

Tetracyclin repressor-like, C-terminal domain

120

254

0.95

PF00440

TetR_N

Bacterial regulatory proteins, tetR family

46

91

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
5d1r-assembly1.cif.gz_B crystal structure of mycobacterium tuberculosis rv1816 transcriptional regulator. 0.9014 21 237
5d1r-assembly1.cif.gz_B crystal structure of mycobacterium tuberculosis rv1816 transcriptional regulator. 0.8644 21 237
3on2-assembly1.cif.gz_A structure of a protein with unknown function from rhodococcus sp. rha1 0.8378 23 233
3on2-assembly3.cif.gz_C structure of a protein with unknown function from rhodococcus sp. rha1 0.8366 23 233
2oi8-assembly1.cif.gz_A-2 crystal structure of putative regulatory protein sco4313 0.8306 13 231
ID Description Score Start End Superfamily
5d1rA00 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;Tetracycline Repressor, domain 2 0.9593 19 234 1.10.357.10
5d1rA00 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;Tetracycline Repressor, domain 2 0.9102 19 234 1.10.357.10
2oi8A00 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;Tetracycline Repressor, domain 2 0.8275 13 231 1.10.357.10
3on2A00 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;Tetracycline Repressor, domain 2 0.8243 23 233 1.10.357.10
2oi8A00 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;Tetracycline Repressor, domain 2 0.8198 13 231 1.10.357.10
ID Description Score Start End GO Terms
AF-A0A1Q5AGM2-F1-model_v4 TetR family transcriptional regulator 0.9817 14 237 GO:0003677
GO:0006355
AF-A0A5D0UYQ8-F1-model_v4 TetR/AcrR family transcriptional regulator 0.98 14 236 GO:0003677
GO:0006355
AF-A0A4V6P902-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9747 14 237 GO:0003677
GO:0006355
AF-A0A372FVE6-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9692 14 236 GO:0003677
GO:0006355
AF-A0A7G8WPU1-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9691 13 235 GO:0000976
GO:0003700

Map