F225590

General Info

Members Datasets Scaffolds Average Seq Length
156 131 131 491

Family's Representative Sequence

Representative Sequence 3300046474|Ga0495605_0061058|Ga0495605_0061058_19_1620
Length 533
Sequence MPQRWNPSSRDSARMRAAKACGSLGVADEALIRASIESRAMTALIPLHGSAAARALDQQASARLAGGAFELMQRAGRAAWQQLQARWPKAQRITVVCGPGNNGGDGYVLALAALQARRAVVVLHLEDHTPRTDLSQRACTDYVAAGGRIELFPEHFPPADVVVDALFGIGLSRAPDGQTQQLIEAINAQPSPVFALDVPSGVDASLATAPGAAVRAQATLQFIVRHHGLHTGAGLEHAGDLLLDPLDVPTDLLRMSAPKAHLLTPDMLHHWLRPRRRDTHKGESGRVLVIGGDLGHGGAIAMAAEAAMRGGAGLVSVATRKAHVVPLLTRRPEAMTHAVESGSDLQPLLDAADVIAIGPGLGQGDWGRALLRLALDAGKPLVLDADALNLIAATPRTLRDAIVTPHPGEAARLLGRSTGEVQADRFGAVTELSTRLQATVVLKGAGTLVASEGQAPRVIGAGNPGMATGGMGDVLTGVIAALRAQGLPALEAASAGALLHSMAGDAAAQRGQRGLLATDLFDHLQPLANPEPN

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2524614729 Arenimonas oryziterrae YC6267, DSM 21050 Isolate Rhizosphere
3 2571042365 Lysobacter oryzae DSM 21044 Isolate Rhizosphere
4 2627854209 Arenimonas oryziterrae YC6267, DSM 21050 Isolate Rhizosphere
5 2643221559 Lysobacter sp. Root559 Isolate Unclassified
6 2643221573 Lysobacter sp. Root604 Isolate Unclassified
7 2643221579 Pseudoxanthomonas sp. Root630 Isolate Unclassified
8 2643221586 Lysobacter sp. Root667 Isolate Unclassified
9 2643221593 Lysobacter sp. Root690 Isolate Unclassified
10 2643221612 Lysobacter sp. Root76 Isolate Unclassified
11 2643221695 Lysobacter sp. Root494 Isolate Unclassified
12 2643221720 Lysobacter sp. Root916 Isolate Unclassified
13 2643221727 Lysobacter sp. Root96 Isolate Unclassified
14 2643221728 Lysobacter sp. Root983 Isolate Unclassified
15 2842757796 Stenotrophomonas sp. R-72406 Isolate Unclassified
16 2842780639 Pseudoxanthomonas sp. R-71986 Isolate Unclassified
17 2894414249 Luteimonas sp. LNNU 24178 Isolate Rhizosphere
18 2919493220 Aeromonas salmonicida salmonicida 3466 Isolate Unclassified
19 2919513703 Luteimonas sp. 3794 Isolate Unclassified
20 2919543075 Aeromonas salmonicida masoucida 4076 Isolate Unclassified
21 2919675420 Luteimonas terrae 4099 Isolate Unclassified
22 2923525760 Aeromonas caviae SLBN-129 Isolate Rhizosphere
23 2941489479 Lysobacter enzymogenes 2943 Isolate Rhizosphere
24 2987605356 Stenotrophomonas sp. ATCM1_4 Isolate Unclassified
25 2995948881 Lysobacter enzymogenes B25 Isolate Unclassified
26 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
27 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
28 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
29 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
30 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
31 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
32 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
33 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
34 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
35 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
36 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
37 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
38 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
39 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
40 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
41 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
42 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
43 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
44 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
45 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
46 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
47 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
48 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
49 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
50 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
51 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
52 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
53 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
54 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
55 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
56 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
57 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
58 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
59 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
60 3300015689 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A02 Metagenome Rhizosphere
61 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
62 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
63 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
64 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
65 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
67 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
68 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
69 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
70 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
80 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
81 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
82 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
83 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
84 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
85 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
86 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
87 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
88 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
89 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
90 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
91 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
92 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
93 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
94 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
95 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
96 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
97 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
98 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
99 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
100 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
101 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
102 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
103 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
104 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
105 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
106 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
107 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
108 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
109 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
110 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
111 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
112 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
113 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
114 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
115 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
116 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
117 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
118 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
119 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
120 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
123 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
124 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
126 3300049772 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E11_B_4_control Metagenome Rhizosphere
127 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
128 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
129 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
130 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
131 8002869464 Pseudoxanthomonas helianthi 110414 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 83.97
Metatranscriptomes 0
Isolates 16.03

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.1
Nodule 0.64
Rhizoplane 3.85
Rhizosphere 66.03
Stem 0
Stem Tuber 0
Unclassified 15.38

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_3177006 2162886007 Bacteria 4724
2 JGI25151J46595_10000680 3300003187 Bacteria 28727
3 Ga0055526_1000426 3300003771 Bacteria 33925
4 Ga0055537_1001728 3300003773 Bacteria 8060
5 Ga0055524_1000453 3300003775 Bacteria 33925
6 Ga0055536_1000888 3300003781 Bacteria 19458
7 Ga0055534_1000291 3300003784 Bacteria 33925
8 Ga0055528_1000425 3300003790 Bacteria 33925
9 Ga0058692_1000012 3300003856 Bacteria 318930
10 Ga0065715_10004443 3300005293 Bacteria 4109
11 Ga0070670_100044893 3300005331 Bacteria 3799
12 Ga0070682_100000640 3300005337 Bacteria 21268
13 Ga0070660_100112387 3300005339 Bacteria 2168
14 Ga0070661_100022805 3300005344 Bacteria 4482
15 Ga0070669_100032464 3300005353 Bacteria 3771
16 Ga0070671_100009336 3300005355 Bacteria 7875
17 Ga0070673_100108124 3300005364 Bacteria 2302
18 Ga0070659_100018058 3300005366 Bacteria 5319
19 Ga0070662_100000154 3300005457 Bacteria 39615
20 Ga0068853_100001874 3300005539 Bacteria 15481
21 Ga0070672_100061845 3300005543 Bacteria 2953
22 Ga0068855_100013724 3300005563 Bacteria 9767
23 Ga0070664_100001161 3300005564 Bacteria 20900
24 Ga0068856_100001030 3300005614 Bacteria 29686
25 Ga0068852_100090746 3300005616 Bacteria 2733
26 Ga0068864_100147425 3300005618 Bacteria 2129
27 Ga0075364_10000037 3300006051 Bacteria 47111
28 Ga0099826_10027360 3300006948 Bacteria 4192
29 Ga0105240_10005037 3300009093 Bacteria 19823
30 Ga0111539_10021093 3300009094 Bacteria 8022
31 Ga0111539_10131360 3300009094 Bacteria 2932
32 Ga0105032_100434 3300009979 Bacteria 4197
33 Ga0157373_10007774 3300013100 Bacteria 7970
34 Ga0157371_10000313 3300013102 Bacteria 63085
35 Ga0157378_10041321 3300013297 Bacteria 4090
36 Ga0157372_10001513 3300013307 Bacteria 25249
37 Ga0183360_10001 3300015689 Bacteria 3943671
38 Ga0207425_1006437 3300025245 Bacteria 3209
39 Ga0209565_1000001 3300025263 Bacteria 2950419
40 Ga0209673_1000001 3300025273 Bacteria 3176258
41 Ga0209675_1000001 3300025291 Bacteria 2950293
42 Ga0209676_1000024 3300025292 Bacteria 578839
43 Ga0209025_1000015 3300025294 Bacteria 808120
44 Ga0209025_1002929 3300025294 Bacteria 16990
45 Ga0209564_1000001 3300025295 Bacteria 3176258
46 Ga0209758_1006111 3300025297 Bacteria 8834
47 Ga0209256_1000002 3300025299 Bacteria 1906740
48 Ga0209257_1000217 3300025304 Bacteria 136049
49 Ga0207695_10014246 3300025913 Bacteria 9431
50 Ga0207657_10000410 3300025919 Bacteria 45335
51 Ga0207659_10084708 3300025926 Bacteria 2353
52 Ga0207690_10000529 3300025932 Bacteria 24831
53 Ga0207706_10000508 3300025933 Bacteria 41431
54 Ga0207691_10002537 3300025940 Bacteria 17844
55 Ga0207691_10077258 3300025940 Bacteria 3000
56 Ga0207691_10115479 3300025940 Bacteria 2384
57 Ga0207648_10178265 3300026089 Bacteria 1880
58 Ga0207698_10032000 3300026142 Bacteria 3805
59 Ga0209371_1000007 3300027312 Bacteria 1050654
60 Ga0268256_1000008 3300030500 Bacteria 1050654
61 Ga0316177_1128013 3300030731 Bacteria 7372
62 Ga0314311_1036193 3300030733 Bacteria 8175
63 Ga0265332_10004998 3300031238 Bacteria 6163
64 Ga0307513_10001515 3300031456 Bacteria 33354
65 Ga0307513_10176718 3300031456 Bacteria 2004
66 Ga0307408_100097997 3300031548 Bacteria 2228
67 Ga0307408_100144986 3300031548 Bacteria 1868
68 Ga0316578_10048255 3300031728 Bacteria 2486
69 Ga0307413_10028652 3300031824 Bacteria 3105
70 Ga0307410_10058412 3300031852 Unclassified 2630
71 Ga0307406_10039511 3300031901 Bacteria 2928
72 Ga0307414_10004734 3300032004 Bacteria 7426
73 Ga0307414_10028852 3300032004 Bacteria 3604
74 Ga0307414_10039975 3300032004 Bacteria 3164
75 Ga0307414_10103304 3300032004 Bacteria 2150
76 Ga0307411_10004582 3300032005 Bacteria 6646
77 Ga0316580_10002577 3300032139 Bacteria 5017
78 Ga0316582_0006497 3300036647 Bacteria 6144
79 Ga0439436_0006327 3300041404 Bacteria 3637
80 Ga0439436_0010552 3300041404 Bacteria 2815
81 Ga0439439_0002965 3300041406 Bacteria 3689
82 Ga0439465_0000488 3300041413 Bacteria 11783
83 Ga0439465_0012149 3300041413 Bacteria 2695
84 Ga0439465_0022906 3300041413 Bacteria 1963
85 Ga0451791_1906952 3300041451 Bacteria 2663
86 Ga0451797_0308337 3300041453 Bacteria 2725
87 Ga0439433_0007398 3300041999 Bacteria 2371
88 Ga0439449_0000018 3300042007 Bacteria 46636
89 Ga0439449_0003774 3300042007 Bacteria 5865
90 Ga0439449_0006467 3300042007 Bacteria 4480
91 Ga0439449_0012021 3300042007 Bacteria 3253
92 Ga0451577_0010198 3300042876 Bacteria 8998
93 Ga0453684_0000672 3300044712 Bacteria 122591
94 Ga0453684_0188393 3300044712 Bacteria 2415
95 Ga0451576_0000268 3300045051 Bacteria 127422
96 Ga0495638_0037599 3300046460 Bacteria 3079
97 Ga0495605_0061058 3300046474 Bacteria 1805
98 Ga0495606_0035340 3300046507 Bacteria 3416
99 Ga0495663_0000391 3300046525 Bacteria 16201
100 Ga0495663_0002515 3300046525 Bacteria 5497
101 Ga0495621_0000642 3300046539 Bacteria 8787
102 Ga0495633_0001984 3300046558 Bacteria 14817
103 Ga0495656_0004501 3300046615 Bacteria 4772
104 Ga0495656_0019227 3300046615 Bacteria 2635
105 Ga0495656_0023091 3300046615 Bacteria 2444
106 Ga0495671_0026643 3300046692 Bacteria 2995
107 Ga0495636_0003285 3300047318 Bacteria 6263
108 Ga0495636_0009149 3300047318 Bacteria 3895
109 Ga0495636_0030541 3300047318 Bacteria 2203
110 Ga0495674_0046908 3300047319 Bacteria 3833
111 Ga0496102_0004664 3300048905 Bacteria 11594
112 Ga0496106_0053226 3300048909 Bacteria 3057
113 Ga0496107_0017191 3300048910 Bacteria 5088
114 Ga0496107_0044368 3300048910 Bacteria 3196
115 Ga0496121_0003233 3300048924 Bacteria 23426
116 Ga0496122_0046365 3300048925 Bacteria 3367
117 Ga0496124_0000009 3300048927 Bacteria 734820
118 Ga0501031_0028263 3300049568 Bacteria 3655
119 Ga0501034_0000091 3300049571 Bacteria 164456
120 Ga0501034_0005598 3300049571 Bacteria 13682
121 Ga0501037_0144696 3300049573 Bacteria 1700
122 Ga0501038_0035008 3300049574 Bacteria 4412
123 Ga0501047_0181187 3300049581 Bacteria 1973
124 Ga0501070_0180871 3300049586 Bacteria 1735
125 Ga0501275_000944 3300049772 Bacteria 3076
126 Ga0501035_0178718 3300049822 Bacteria 1829
127 nmdc:mga00v17_13082_c1 3300050491 Bacteria 4598
128 nmdc:mga00v17_370_c1 3300050491 Bacteria 25524
129 nmdc:mga08y16_248416_c1 3300050511 Bacteria 1838
130 nmdc:mga08y16_4964_c1 3300050511 Bacteria 13905
131 Ga0500588_0004820 3300053146 Bacteria 2947

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044712 Ga0453684_0188393 Ga0453684_0188393_540_1997 439
2 3300047319 Ga0495674_0046908 Ga0495674_0046908_1827_3317 448
3 3300048910 Ga0496107_0017191 Ga0496107_0017191_3600_5069 452
4 3300048924 Ga0496121_0003233 Ga0496121_0003233_20708_22255 455
5 3300005337 Ga0070682_100000640 Ga0070682_1000006404 459
6 3300046615 Ga0495656_0023091 Ga0495656_0023091_485_1882 459
7 3300031456 Ga0307513_10001515 Ga0307513_100015156 462
8 3300031238 Ga0265332_10004998 Ga0265332_100049982 463
9 3300041404 Ga0439436_0010552 Ga0439436_0010552_14_1456 465
10 3300005339 Ga0070660_100112387 Ga0070660_1001123872 466
11 3300005344 Ga0070661_100022805 Ga0070661_1000228052 466
12 3300005353 Ga0070669_100032464 Ga0070669_1000324643 466
13 3300005355 Ga0070671_100009336 Ga0070671_1000093362 466
14 3300005364 Ga0070673_100108124 Ga0070673_1001081242 466
15 3300005366 Ga0070659_100018058 Ga0070659_1000180581 466
16 3300005457 Ga0070662_100000154 Ga0070662_10000015438 466
17 3300005539 Ga0068853_100001874 Ga0068853_1000018749 466
18 3300005563 Ga0068855_100013724 Ga0068855_10001372410 466
19 3300005564 Ga0070664_100001161 Ga0070664_1000011615 466
20 3300005614 Ga0068856_100001030 Ga0068856_10000103010 466
21 3300005616 Ga0068852_100090746 Ga0068852_1000907461 466
22 3300013100 Ga0157373_10007774 Ga0157373_100077743 466
23 3300013102 Ga0157371_10000313 Ga0157371_1000031345 466
24 3300013307 Ga0157372_10001513 Ga0157372_1000151311 466
25 3300025919 Ga0207657_10000410 Ga0207657_1000041024 466
26 3300025932 Ga0207690_10000529 Ga0207690_100005292 466
27 3300025933 Ga0207706_10000508 Ga0207706_100005087 466
28 3300025940 Ga0207691_10115479 Ga0207691_101154792 466
29 3300026142 Ga0207698_10032000 Ga0207698_100320003 466
30 3300046460 Ga0495638_0037599 Ga0495638_0037599_741_2237 466
31 3300048905 Ga0496102_0004664 Ga0496102_0004664_1102_2613 466
32 3300041413 Ga0439465_0000488 Ga0439465_0000488_8887_10362 468
33 3300041413 Ga0439465_0022906 Ga0439465_0022906_344_1816 468
34 3300042007 Ga0439449_0000018 Ga0439449_0000018_31272_32747 468
35 3300042007 Ga0439449_0006467 Ga0439449_0006467_262_1734 468
36 3300046525 Ga0495663_0000391 Ga0495663_0000391_3319_4803 469
37 3300046692 Ga0495671_0026643 Ga0495671_0026643_1049_2533 469
38 3300003856 Ga0058692_1000012 Ga0058692_100001263 471
39 3300025294 Ga0209025_1002929 Ga0209025_10029296 471
40 3300027312 Ga0209371_1000007 Ga0209371_1000007326 471
41 3300030500 Ga0268256_1000008 Ga0268256_1000008624 471
42 3300031852 Ga0307410_10058412 Ga0307410_100584123 471
43 3300049772 Ga0501275_000944 Ga0501275_000944_532_2031 471
44 iso_pu_bacteria 2524614729 2525555819 471
45 iso_pu_bacteria 2627854209 2630650833 471
46 3300046539 Ga0495621_0000642 Ga0495621_0000642_2585_4081 475
47 3300003781 Ga0055536_1000888 Ga0055536_100088820 476
48 3300006948 Ga0099826_10027360 Ga0099826_100273603 476
49 3300025292 Ga0209676_1000024 Ga0209676_1000024312 476
50 3300046525 Ga0495663_0002515 Ga0495663_0002515_1266_2753 476
51 3300046558 Ga0495633_0001984 Ga0495633_0001984_6820_8307 476
52 3300041404 Ga0439436_0006327 Ga0439436_0006327_2108_3580 477
53 3300025304 Ga0209257_1000217 Ga0209257_100021773 479
54 3300041413 Ga0439465_0012149 Ga0439465_0012149_600_2084 479
55 3300041451 Ga0451791_1906952 Ga0451791_1906952_854_2338 479
56 3300041453 Ga0451797_0308337 Ga0451797_0308337_485_1969 479
57 3300041999 Ga0439433_0007398 Ga0439433_0007398_462_1946 479
58 iso_pu_bacteria 2919493220 2919494954 479
59 iso_pu_bacteria 2919543075 2919545908 479
60 iso_pu_bacteria 2923525760 2923529793 479
61 3300032004 Ga0307414_10028852 Ga0307414_100288522 483
62 3300005331 Ga0070670_100044893 Ga0070670_1000448934 484
63 3300009094 Ga0111539_10021093 Ga0111539_100210936 484
64 3300025940 Ga0207691_10002537 Ga0207691_1000253714 484
65 3300026089 Ga0207648_10178265 Ga0207648_101782652 484
66 3300042007 Ga0439449_0012021 Ga0439449_0012021_548_2020 484
67 3300048925 Ga0496122_0046365 Ga0496122_0046365_715_2199 484
68 3300050511 nmdc:mga08y16_4964_c1 nmdc:mga08y16_4964_c1_10767_12257 484
69 3300053146 Ga0500588_0004820 Ga0500588_0004820_526_2016 484
70 3300003771 Ga0055526_1000426 Ga0055526_10004265 485
71 3300003773 Ga0055537_1001728 Ga0055537_10017282 485
72 3300003775 Ga0055524_1000453 Ga0055524_10004535 485
73 3300003784 Ga0055534_1000291 Ga0055534_10002915 485
74 3300003790 Ga0055528_1000425 Ga0055528_10004255 485
75 3300025263 Ga0209565_1000001 Ga0209565_10000011694 485
76 3300025273 Ga0209673_1000001 Ga0209673_10000011694 485
77 3300025291 Ga0209675_1000001 Ga0209675_1000001839 485
78 3300025295 Ga0209564_1000001 Ga0209564_10000011001 485
79 3300025299 Ga0209256_1000002 Ga0209256_1000002552 485
80 iso_pu_bacteria 2571042365 2572253516 485
81 iso_pu_bacteria 2643221695 2644528858 485
82 3300032004 Ga0307414_10004734 Ga0307414_100047343 486
83 3300032004 Ga0307414_10039975 Ga0307414_100399752 486
84 iso_pu_bacteria 2643221579 2643908713 486
85 iso_pu_bacteria 2842757796 2842760037 486
86 iso_pu_bacteria 2842780639 2842781149 486
87 iso_pu_bacteria 2987605356 2987606190 486
88 iso_pu_bacteria 8002869464 8002872575 486
89 3300049568 Ga0501031_0028263 Ga0501031_0028263_273_1760 487
90 3300049571 Ga0501034_0005598 Ga0501034_0005598_840_2327 487
91 3300049573 Ga0501037_0144696 Ga0501037_0144696_73_1560 487
92 3300049574 Ga0501038_0035008 Ga0501038_0035008_2822_4309 487
93 3300049581 Ga0501047_0181187 Ga0501047_0181187_383_1870 487
94 3300049586 Ga0501070_0180871 Ga0501070_0180871_181_1668 487
95 3300049822 Ga0501035_0178718 Ga0501035_0178718_155_1642 487
96 iso_pu_bacteria 2643221586 2643939994 487
97 3300003187 JGI25151J46595_10000680 JGI25151J46595_1000068023 488
98 3300005293 Ga0065715_10004443 Ga0065715_100044434 488
99 3300006051 Ga0075364_10000037 Ga0075364_100000378 488
100 3300015689 Ga0183360_10001 Ga0183360_100012125 488
101 3300025245 Ga0207425_1006437 Ga0207425_10064373 488
102 3300025294 Ga0209025_1000015 Ga0209025_1000015312 488
103 3300025297 Ga0209758_1006111 Ga0209758_10061115 488
104 3300031901 Ga0307406_10039511 Ga0307406_100395111 488
105 3300041406 Ga0439439_0002965 Ga0439439_0002965_1896_3386 488
106 3300044712 Ga0453684_0000672 Ga0453684_0000672_90031_91515 488
107 3300045051 Ga0451576_0000268 Ga0451576_0000268_94861_96345 488
108 3300050491 nmdc:mga00v17_370_c1 nmdc:mga00v17_370_c1_11640_13148 488
109 iso_pu_bacteria 2643221559 2643815317 488
110 iso_pu_bacteria 2643221573 2643879364 488
111 iso_pu_bacteria 2643221593 2643974268 488
112 iso_pu_bacteria 2643221612 2644077050 488
113 iso_pu_bacteria 2643221720 2644660662 488
114 iso_pu_bacteria 2643221727 2644695364 488
115 iso_pu_bacteria 2643221728 2644698022 488
116 iso_pu_bacteria 2941489479 2941493811 488
117 iso_pu_bacteria 2995948881 2995950996 488
118 3300009094 Ga0111539_10131360 Ga0111539_101313601 489
119 3300031548 Ga0307408_100097997 Ga0307408_1000979971 489
120 3300031548 Ga0307408_100144986 Ga0307408_1001449862 489
121 3300031728 Ga0316578_10048255 Ga0316578_100482552 489
122 3300031824 Ga0307413_10028652 Ga0307413_100286522 489
123 3300032004 Ga0307414_10103304 Ga0307414_101033042 489
124 3300032005 Ga0307411_10004582 Ga0307411_100045823 489
125 3300032139 Ga0316580_10002577 Ga0316580_100025771 489
126 3300036647 Ga0316582_0006497 Ga0316582_0006497_1541_3085 489
127 3300042007 Ga0439449_0003774 Ga0439449_0003774_537_2015 489
128 3300042876 Ga0451577_0010198 Ga0451577_0010198_6224_7747 489
129 3300046615 Ga0495656_0019227 Ga0495656_0019227_472_1974 489
130 3300047318 Ga0495636_0003285 Ga0495636_0003285_727_2214 489
131 3300047318 Ga0495636_0009149 Ga0495636_0009149_1679_3169 489
132 3300049571 Ga0501034_0000091 Ga0501034_0000091_146838_148313 489
133 3300050491 nmdc:mga00v17_13082_c1 nmdc:mga00v17_13082_c1_2448_3956 489
134 3300050511 nmdc:mga08y16_248416_c1 nmdc:mga08y16_248416_c1_285_1775 489
135 iso_pu_bacteria 2919513703 2919516156 489
136 iso_pu_bacteria 2919675420 2919677989 489
137 2162886007 SwRhRL2b_contig_3177006 SwRhRL2b_0229.00002930 490
138 3300005543 Ga0070672_100061845 Ga0070672_1000618452 490
139 3300005618 Ga0068864_100147425 Ga0068864_1001474252 490
140 3300009093 Ga0105240_10005037 Ga0105240_100050379 490
141 3300009979 Ga0105032_100434 Ga0105032_1004342 490
142 3300013297 Ga0157378_10041321 Ga0157378_100413214 490
143 3300025913 Ga0207695_10014246 Ga0207695_100142465 490
144 3300025926 Ga0207659_10084708 Ga0207659_100847082 490
145 3300025940 Ga0207691_10077258 Ga0207691_100772583 490
146 3300030731 Ga0316177_1128013 Ga0316177_11280135 490
147 3300030733 Ga0314311_1036193 Ga0314311_10361932 490
148 3300031456 Ga0307513_10176718 Ga0307513_101767182 490
149 3300046474 Ga0495605_0061058 Ga0495605_0061058_19_1620 490
150 3300046507 Ga0495606_0035340 Ga0495606_0035340_1445_2926 490
151 3300046615 Ga0495656_0004501 Ga0495656_0004501_2650_4140 490
152 3300047318 Ga0495636_0030541 Ga0495636_0030541_482_1972 490
153 3300048909 Ga0496106_0053226 Ga0496106_0053226_1286_2776 490
154 3300048910 Ga0496107_0044368 Ga0496107_0044368_1385_2875 490
155 3300048927 Ga0496124_0000009 Ga0496124_0000009_114363_115844 490
156 iso_pu_bacteria 2894414249 2894415016 490

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01256

Carb_kinase

Carbohydrate kinase

287

526

0.98

PF03853

YjeF_N

YjeF-related protein N-terminus

68

228

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
2r3b-assembly1.cif.gz_B crystal structure of a ribokinase-like superfamily protein (ef1790) from enterococcus faecalis v583 at 1.80 a resolution 0.9287 222 488
3bgk-assembly1.cif.gz_A the crystal structure of hypothetic protein smu.573 from streptococcus mutans 0.9216 222 488
3rss-assembly1.cif.gz_A crystal structure of tm0922, a fusion of a domain of unknown function and adp/atp-dependent nad(p)h-hydrate dehydratase from thermotoga maritima soaked with nadp 0.896 5 487
3bgk-assembly1.cif.gz_A the crystal structure of hypothetic protein smu.573 from streptococcus mutans 0.8897 222 488
3rph-assembly1.cif.gz_A crystal structure of adp/atp-dependent nad(p)h-hydrate dehydratase from bacillus subtilis co-crystallized with atp/mg2+. 0.8849 224 487
ID Description Score Start End Superfamily
af_P31806_227_500_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.9826 217 490 3.40.1190.20
af_P31806_227_500_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.9791 217 490 3.40.1190.20
af_P31806_15_224_3.40.50.10260 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;YjeF N-terminal domain 0.9559 5 207 3.40.50.10260
af_A4HW65_253_553_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.9514 231 490 3.40.1190.20
af_Q4DA84_248_552_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.9425 222 489 3.40.1190.20
ID Description Score Start End GO Terms
AF-A0A7W5NV86-F1-model_v4 Bifunctional NAD(P)H-hydrate repair enzyme (Nicotinamide nucleotide repair protein) [Includes: ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136) (ADP-dependent NAD(P)HX dehydratase); NAD(P)H-hydrate epimerase (EC 5.1.99.6)] 0.9938 1 490 GO:0005524
GO:0046496
GO:0046872
GO:0052855
GO:0052856
GO:0110051
AF-A0A7W5NV86-F1-model_v4 Bifunctional NAD(P)H-hydrate repair enzyme (Nicotinamide nucleotide repair protein) [Includes: ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136) (ADP-dependent NAD(P)HX dehydratase); NAD(P)H-hydrate epimerase (EC 5.1.99.6)] 0.9918 1 490 GO:0005524
GO:0046496
GO:0046872
GO:0052855
GO:0052856
GO:0110051
AF-A0A6N6TBJ5-F1-model_v4 Bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase 0.9892 349 490 GO:0005524
GO:0052855
GO:0052856
GO:0110051
AF-A0A4Q6FH80-F1-model_v4 deleted 0.9868 304 490
AF-A0A836ZNG3-F1-model_v4 deleted 0.9864 238 458

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pLDDT pTM Quality
96.19 0.93 High
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Predicted Structure (AlphaFold2)

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