F225575

General Info

Members Datasets Scaffolds Average Seq Length
156 121 312 241

Family's Representative Sequence

Representative Sequence 3300046462|Ga0495651_0029148|Ga0495651_0029148_3144_3968
Length 274
Sequence MTPVQRLTEVFVEVADSLTDDFDIIDLLQRLSERCVELLDVSAAGILLADQFDELQLLAASDENTRLLELFALQHDQGPCIECCRSGRAQTDIDLSTAGARNRWPQFASRAAAAGFVRTQAIPLRLRQRVVGALNLFHERTGNFTSADQALAQALADIATIAILQQRTLHRSQLEHLQVQTALNTRAVVEQAKGILAERWHTTIDDAFTILRNHARTHRSRLTDVAHQVIDQTIDTDTLLHSGDVALVAAGFAPRRTSSPEPGPCPVASRSENN

Samples

Sample ID Description Type Environment
1 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
2 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
3 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
4 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
5 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
6 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
7 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
8 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
9 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
10 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
11 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
12 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
13 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
14 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
15 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
16 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
17 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
18 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
19 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
20 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
21 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
22 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
23 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
24 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
25 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
27 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
29 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
37 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
39 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
40 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
41 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
42 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
43 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
44 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
45 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
46 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
47 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
48 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
49 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
50 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
51 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
52 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
53 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
54 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
55 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
56 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
57 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
58 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
59 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
60 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
61 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
62 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
63 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
64 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
65 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
66 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
67 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
68 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
69 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
70 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
71 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
72 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
73 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
74 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
75 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
76 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
77 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
78 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
79 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
80 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
81 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
82 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
83 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
84 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
85 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
86 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
87 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
88 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
89 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
90 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
91 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
92 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
93 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
94 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
95 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
96 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
97 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
98 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
99 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
100 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
101 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
102 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
103 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
104 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
105 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
106 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
107 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
108 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
109 3300049659 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_B_0_control Metagenome Rhizosphere
110 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
111 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
112 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
113 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
114 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
115 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
116 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
117 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
118 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
119 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
120 2643221616 Leifsonia sp. Root227 Isolate Unclassified
121 2795385470 Labedaea rhizosphaerae DSM 45361 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.72
Metatranscriptomes 0
Isolates 1.28

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.82
Nodule 0
Rhizoplane 4.49
Rhizosphere 75
Stem 0
Stem Tuber 0
Unclassified 2.56

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495651_0029148 3300046462 Bacteria 4304
2 Ga0070692_10175582 3300005345 Bacteria 1238
3 Ga0070674_100546621 3300005356 Unclassified 971
4 Ga0070688_100465444 3300005365 Bacteria 948
5 Ga0070714_100401259 3300005435 Bacteria 1296
6 Ga0070714_100509884 3300005435 Bacteria 1148
7 Ga0070714_100526796 3300005435 Bacteria 1129
8 Ga0070705_100181058 3300005440 Bacteria 1428
9 Ga0070708_100094567 3300005445 Bacteria 2727
10 Ga0070681_10009626 3300005458 Bacteria 9502
11 Ga0070681_10030679 3300005458 Bacteria 5395
12 Ga0070696_100461831 3300005546 Bacteria 1004
13 Ga0068855_100259598 3300005563 Bacteria 1936
14 Ga0068856_100062848 3300005614 Bacteria 3668
15 Ga0068859_101114689 3300005617 Bacteria 868
16 Ga0081455_10016439 3300005937 Bacteria 7145
17 Ga0070717_10392305 3300006028 Bacteria 1246
18 Ga0070717_10466568 3300006028 Bacteria 1139
19 Ga0075365_10028429 3300006038 Bacteria 3566
20 Ga0075365_10044024 3300006038 Bacteria 2924
21 Ga0075365_10044175 3300006038 Bacteria 2919
22 Ga0075365_10186711 3300006038 Bacteria 1450
23 Ga0075365_10223752 3300006038 Bacteria 1320
24 Ga0075368_10010422 3300006042 Bacteria 3359
25 Ga0075363_100059961 3300006048 Bacteria 2047
26 Ga0075363_100302163 3300006048 Bacteria 929
27 Ga0075364_10115955 3300006051 Bacteria 1790
28 Ga0075367_10006152 3300006178 Bacteria 6041
29 Ga0075428_100001295 3300006844 Bacteria 26560
30 Ga0075430_100005710 3300006846 Bacteria 10497
31 Ga0075431_100003929 3300006847 Bacteria 14481
32 Ga0075429_100017154 3300006880 Bacteria 6262
33 Ga0097620_101114836 3300006931 Bacteria 868
34 Ga0111539_10199500 3300009094 Bacteria 2333
35 Ga0105245_10000338 3300009098 Bacteria 44251
36 Ga0105245_10514546 3300009098 Bacteria 1215
37 Ga0114129_10002694 3300009147 Bacteria 24719
38 Ga0157378_10420205 3300013297 Bacteria 1321
39 Ga0207707_10024175 3300025912 Bacteria 5315
40 Ga0207707_10201023 3300025912 Bacteria 1737
41 Ga0207649_10126221 3300025920 Unclassified 1732
42 Ga0207664_10188862 3300025929 Bacteria 1772
43 Ga0207664_10532101 3300025929 Bacteria 1054
44 Ga0207661_10155050 3300025944 Bacteria 1983
45 Ga0207668_10159130 3300025972 Bacteria 1758
46 Ga0207702_10092057 3300026078 Bacteria 2656
47 Ga0207683_10421855 3300026121 Bacteria 1229
48 Ga0209813_10002998 3300027866 Bacteria 3914
49 Ga0268266_10472858 3300028379 Bacteria 1194
50 Ga0265322_10050000 3300028654 Archaea 1187
51 Ga0307517_10025876 3300028786 Bacteria 7146
52 Ga0307515_10000965 3300028794 Bacteria 65641
53 Ga0265338_10000984 3300028800 Bacteria 48011
54 Ga0307511_10129647 3300030521 Bacteria 1524
55 Ga0307512_10028425 3300030522 Bacteria 4903
56 Ga0265325_10000543 3300031241 Bacteria 27333
57 Ga0265339_10000663 3300031249 Bacteria 26614
58 Ga0307513_10034430 3300031456 Bacteria 5685
59 Ga0307509_10091965 3300031507 Bacteria 3103
60 Ga0307408_100709600 3300031548 Bacteria 905
61 Ga0265313_10001881 3300031595 Bacteria 19081
62 Ga0307413_10023760 3300031824 Bacteria 3327
63 Ga0307518_10090932 3300031838 Bacteria 2196
64 Ga0307410_10043162 3300031852 Bacteria 2986
65 Ga0307410_10112001 3300031852 Bacteria 1976
66 Ga0307407_10492224 3300031903 Bacteria 897
67 Ga0307409_100082866 3300031995 Bacteria 2598
68 Ga0307409_100197814 3300031995 Bacteria 1795
69 Ga0307409_100288273 3300031995 Bacteria 1521
70 Ga0307409_100299536 3300031995 Bacteria 1495
71 Ga0307416_100245619 3300032002 Bacteria 1738
72 Ga0307416_100651126 3300032002 Bacteria 1138
73 Ga0307415_100008427 3300032126 Bacteria 5711
74 Ga0307415_100025472 3300032126 Bacteria 3713
75 Ga0307415_100214729 3300032126 Bacteria 1537
76 Ga0307415_100723728 3300032126 Bacteria 901
77 Ga0307507_10013766 3300033179 Bacteria 9758
78 Ga0307510_10064729 3300033180 Bacteria 3710
79 Ga0395899_0183669 3300037312 Unclassified 1467
80 Ga0395900_0709046 3300037418 Unclassified 939
81 Ga0395901_0130114 3300038443 Bacteria 2645
82 Ga0451853_4077793 3300041512 Bacteria 1140
83 Ga0439448_0002142 3300042005 Bacteria 5313
84 Ga0439463_008494 3300042016 Bacteria 2532
85 Ga0439434_0004679 3300042435 Bacteria 4011
86 Ga0466967_0393549 3300045976 Bacteria 1347
87 Ga0495590_0035693 3300046457 Bacteria 1735
88 Ga0495629_0003694 3300046459 Bacteria 11561
89 Ga0495651_0374235 3300046462 Bacteria 935
90 Ga0495653_0021670 3300046463 Bacteria 5204
91 Ga0495580_0059821 3300046472 Bacteria 2677
92 Ga0495582_0095346 3300046473 Bacteria 1662
93 Ga0495639_0249339 3300046475 Bacteria 878
94 Ga0495664_0015070 3300046477 Bacteria 4391
95 Ga0495583_0117039 3300046506 Bacteria 1124
96 Ga0495608_0003765 3300046511 Bacteria 10890
97 Ga0495608_0066267 3300046511 Bacteria 2364
98 Ga0495608_0428323 3300046511 Bacteria 807
99 Ga0495618_0009040 3300046514 Bacteria 6013
100 Ga0495618_0142080 3300046514 Bacteria 1535
101 Ga0495628_0016874 3300046516 Bacteria 6086
102 Ga0495630_0140577 3300046517 Bacteria 1835
103 Ga0495666_0029689 3300046526 Bacteria 2689
104 Ga0495652_0203539 3300046529 Bacteria 1500
105 Ga0495665_0000795 3300046531 Bacteria 16517
106 Ga0495665_0006915 3300046531 Bacteria 6120
107 Ga0495640_0011218 3300046533 Bacteria 6898
108 Ga0495586_0009111 3300046535 Bacteria 5279
109 Ga0495645_0022368 3300046543 Bacteria 4573
110 Ga0495634_0117601 3300046642 Bacteria 1704
111 Ga0495625_0036976 3300046660 Bacteria 3584
112 Ga0495635_0018859 3300046663 Bacteria 4814
113 Ga0495588_0187156 3300046674 Bacteria 1093
114 Ga0495657_0001611 3300046675 Bacteria 19395
115 Ga0495657_0035775 3300046675 Bacteria 3438
116 Ga0495613_0007824 3300046689 Bacteria 7948
117 Ga0495671_0013679 3300046692 Bacteria 4386
118 Ga0495600_0100783 3300046809 Bacteria 1882
119 Ga0495600_0226241 3300046809 Bacteria 1195
120 Ga0495581_0003200 3300047315 Bacteria 9373
121 Ga0495604_0001672 3300047317 Bacteria 18241
122 Ga0495604_0009063 3300047317 Bacteria 7873
123 Ga0495674_0081567 3300047319 Bacteria 2774
124 Ga0495672_0010034 3300047320 Bacteria 6785
125 Ga0495672_0185893 3300047320 Bacteria 1049
126 Ga0495681_0024794 3300047470 Bacteria 3148
127 Ga0495684_0176168 3300047471 Bacteria 1587
128 Ga0495686_0080958 3300047472 Bacteria 1984
129 Ga0495593_0011369 3300047673 Bacteria 5114
130 Ga0495602_0163571 3300048088 Bacteria 1734
131 Ga0496102_0381871 3300048905 Bacteria 1326
132 Ga0496104_0132035 3300048907 Bacteria 2399
133 Ga0496108_0252345 3300048911 Bacteria 1535
134 Ga0496108_0698688 3300048911 Bacteria 880
135 Ga0496109_0766304 3300048912 Bacteria 903
136 Ga0496110_0226306 3300048913 Bacteria 1701
137 Ga0496114_0217002 3300048917 Bacteria 1679
138 Ga0496124_0289594 3300048927 Bacteria 1189
139 Ga0501214_020453 3300049659 Bacteria 836
140 nmdc:mga03n38_12535_c1 3300050490 Bacteria 3194
141 nmdc:mga0yw44_148831_c1 3300050492 Bacteria 1526
142 nmdc:mga0yw44_35598_c1 3300050492 Bacteria 2927
143 nmdc:mga0yw44_35772_c1 3300050492 Bacteria 2921
144 nmdc:mga0yw44_50618_c1 3300050492 Bacteria 2512
145 nmdc:mga0yw44_80696_c1 3300050492 Bacteria 2038
146 nmdc:mga06z11_89717_c1 3300050494 Bacteria 1667
147 nmdc:mga04h51_31571_c1 3300050495 Bacteria 1675
148 nmdc:mga05p37_11299_c1 3300050507 Bacteria 10622
149 nmdc:mga09592_14248_c1 3300050508 Bacteria 6491
150 nmdc:mga0qj67_6953_c1 3300050509 Bacteria 8330
151 Ga0495601_0053441 3300053077 Bacteria 2553
152 Ga0495619_0016574 3300053085 Bacteria 4665
153 Ga0495619_0054159 3300053085 Bacteria 2654
154 Ga0500644_0008124 3300053088 Bacteria 2761
155 2644096594 2643221616 Bacteria 4066575
156 2795784502 2795385470 Bacteria 8317180
157 Ga0495651_0029148
158 Ga0070692_10175582
159 Ga0070674_100546621
160 Ga0070688_100465444
161 Ga0070714_100401259
162 Ga0070714_100509884
163 Ga0070714_100526796
164 Ga0070705_100181058
165 Ga0070708_100094567
166 Ga0070681_10009626
167 Ga0070681_10030679
168 Ga0070696_100461831
169 Ga0068855_100259598
170 Ga0068856_100062848
171 Ga0068859_101114689
172 Ga0081455_10016439
173 Ga0070717_10392305
174 Ga0070717_10466568
175 Ga0075365_10028429
176 Ga0075365_10044024
177 Ga0075365_10044175
178 Ga0075365_10186711
179 Ga0075365_10223752
180 Ga0075368_10010422
181 Ga0075363_100059961
182 Ga0075363_100302163
183 Ga0075364_10115955
184 Ga0075367_10006152
185 Ga0075428_100001295
186 Ga0075430_100005710
187 Ga0075431_100003929
188 Ga0075429_100017154
189 Ga0097620_101114836
190 Ga0111539_10199500
191 Ga0105245_10000338
192 Ga0105245_10514546
193 Ga0114129_10002694
194 Ga0157378_10420205
195 Ga0207707_10024175
196 Ga0207707_10201023
197 Ga0207649_10126221
198 Ga0207664_10188862
199 Ga0207664_10532101
200 Ga0207661_10155050
201 Ga0207668_10159130
202 Ga0207702_10092057
203 Ga0207683_10421855
204 Ga0209813_10002998
205 Ga0268266_10472858
206 Ga0265322_10050000
207 Ga0307517_10025876
208 Ga0307515_10000965
209 Ga0265338_10000984
210 Ga0307511_10129647
211 Ga0307512_10028425
212 Ga0265325_10000543
213 Ga0265339_10000663
214 Ga0307513_10034430
215 Ga0307509_10091965
216 Ga0307408_100709600
217 Ga0265313_10001881
218 Ga0307413_10023760
219 Ga0307518_10090932
220 Ga0307410_10043162
221 Ga0307410_10112001
222 Ga0307407_10492224
223 Ga0307409_100082866
224 Ga0307409_100197814
225 Ga0307409_100288273
226 Ga0307409_100299536
227 Ga0307416_100245619
228 Ga0307416_100651126
229 Ga0307415_100008427
230 Ga0307415_100025472
231 Ga0307415_100214729
232 Ga0307415_100723728
233 Ga0307507_10013766
234 Ga0307510_10064729
235 Ga0395899_0183669
236 Ga0395900_0709046
237 Ga0395901_0130114
238 Ga0451853_4077793
239 Ga0439448_0002142
240 Ga0439463_008494
241 Ga0439434_0004679
242 Ga0466967_0393549
243 Ga0495590_0035693
244 Ga0495629_0003694
245 Ga0495651_0374235
246 Ga0495653_0021670
247 Ga0495580_0059821
248 Ga0495582_0095346
249 Ga0495639_0249339
250 Ga0495664_0015070
251 Ga0495583_0117039
252 Ga0495608_0003765
253 Ga0495608_0066267
254 Ga0495608_0428323
255 Ga0495618_0009040
256 Ga0495618_0142080
257 Ga0495628_0016874
258 Ga0495630_0140577
259 Ga0495666_0029689
260 Ga0495652_0203539
261 Ga0495665_0000795
262 Ga0495665_0006915
263 Ga0495640_0011218
264 Ga0495586_0009111
265 Ga0495645_0022368
266 Ga0495634_0117601
267 Ga0495625_0036976
268 Ga0495635_0018859
269 Ga0495588_0187156
270 Ga0495657_0001611
271 Ga0495657_0035775
272 Ga0495613_0007824
273 Ga0495671_0013679
274 Ga0495600_0100783
275 Ga0495600_0226241
276 Ga0495581_0003200
277 Ga0495604_0001672
278 Ga0495604_0009063
279 Ga0495674_0081567
280 Ga0495672_0010034
281 Ga0495672_0185893
282 Ga0495681_0024794
283 Ga0495684_0176168
284 Ga0495686_0080958
285 Ga0495593_0011369
286 Ga0495602_0163571
287 Ga0496102_0381871
288 Ga0496104_0132035
289 Ga0496108_0252345
290 Ga0496108_0698688
291 Ga0496109_0766304
292 Ga0496110_0226306
293 Ga0496114_0217002
294 Ga0496124_0289594
295 Ga0501214_020453
296 nmdc:mga03n38_12535_c1
297 nmdc:mga0yw44_148831_c1
298 nmdc:mga0yw44_35598_c1
299 nmdc:mga0yw44_35772_c1
300 nmdc:mga0yw44_50618_c1
301 nmdc:mga0yw44_80696_c1
302 nmdc:mga06z11_89717_c1
303 nmdc:mga04h51_31571_c1
304 nmdc:mga05p37_11299_c1
305 nmdc:mga09592_14248_c1
306 nmdc:mga0qj67_6953_c1
307 Ga0495601_0053441
308 Ga0495619_0016574
309 Ga0495619_0054159
310 Ga0500644_0008124
311 2644096594
312 2795784502

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03861

ANTAR

ANTAR domain

177

230

0.98

PF01590

GAF

GAF domain

23

163

0.84

PF13185

GAF_2

GAF domain

23

164

0.83

PF13492

GAF_3

GAF domain

23

165

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
3hcy-assembly1.cif.gz_B the crystal structure of the domain of putative two-component sensor histidine kinase protein from sinorhizobium meliloti 1021 0.8689 26 171
2qyb-assembly1.cif.gz_A-2 crystal structure of the gaf domain region of putative membrane protein from geobacter sulfurreducens pca 0.8305 23 161
3hcy-assembly1.cif.gz_B the crystal structure of the domain of putative two-component sensor histidine kinase protein from sinorhizobium meliloti 1021 0.8242 26 171
3hcy-assembly1.cif.gz_A the crystal structure of the domain of putative two-component sensor histidine kinase protein from sinorhizobium meliloti 1021 0.8225 26 171
3p01-assembly1.cif.gz_A crystal structure of two-component response regulator from nostoc sp. pcc 7120 0.8114 3 165
ID Description Score Start End Superfamily
1qo0E02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.988 184 225 1.10.10.10
1qo0D02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9868 184 227 1.10.10.10
1s8nA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9597 177 232 1.10.10.10
1sd5A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.958 178 232 1.10.10.10
af_O06805_22_73_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9523 182 229 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A538CSN5-F1-model_v4 GAF domain-containing protein 0.9703 3 182
AF-A0A841FPV7-F1-model_v4 GAF domain-containing protein 0.956 1 182
AF-A0A3A5MUQ4-F1-model_v4 GAF domain-containing protein 0.9472 1 185
AF-A0A7M4DRW4-F1-model_v4 Nitrate regulatory protein 0.9464 5 234 GO:0003723
GO:0005524
GO:0016301
AF-A0A059MUG5-F1-model_v4 deleted 0.9414 4 234

Map