F225446

General Info

Members Datasets Scaffolds Average Seq Length
156 116 312 483

Family's Representative Sequence

Representative Sequence 3300042184|Ga0450908_002062|Ga0450908_002062_390_1988
Length 532
Sequence MACRTAAASNGRGSPATRDSFARSRPDSMTTPRTVRPSGADTRPVPPERIRFANVAPVRPERAYVLYWMVAARRARANFALQRAVELAVELGRPLIVLEPLRVGYPWASDRLHAFVLQGMADNARAFARTPARYFPYVEARPGEGRGLLEALAANAAAVVTDDAPVSFLPRMIAAAAGRLDVRLEAVDGNGLHPLRAVDRVFTTAFSYRAHLQKTLRRHLDEVPLTNPLAGVRLPPAPGLDAVLSRWREAPPALLTGAADALAGLPIDHDVAPVPASGGAEAGRARLKAFVGRDLATYADDRHDPDDPRTSGLSPYLHFGHVSAHEVFDAVMTHEGWTRRRLATSGGGKREGWWGVARGAEAFLDQLVTWREIGFNAAAHLAGHDRYDTLPAWARTTLAAHARDPRPHRYDLDAFERAATHDPLWNAAQRELVRDGRIHTYLRMLWGKKILEWSRTPQDALETMIQLNDKYALDGRDPNSCSGIFWCLGRYDRPWGPERDIFGTVRYMSSENTARKLRVRGYLARYGPSSLP

Samples

Sample ID Description Type Environment
1 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
8 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
9 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
10 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
11 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
15 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
18 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
19 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
20 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
21 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
22 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
23 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
24 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
25 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
26 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
28 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
29 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
30 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
31 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
45 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
47 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
48 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
49 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
50 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
51 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
52 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
53 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
54 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
55 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
56 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
57 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
58 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
59 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
60 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
61 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
62 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
63 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
64 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
65 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
66 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
67 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
68 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
69 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
70 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
71 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
72 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
73 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
74 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
75 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
76 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
77 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
78 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
79 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
80 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
81 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
82 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
83 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
84 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
85 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
86 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
87 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
88 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
93 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
94 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
95 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
96 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
97 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
98 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
99 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
100 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
101 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
102 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
104 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
105 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
106 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
107 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
108 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
109 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
110 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
111 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
112 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
113 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
114 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
115 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
116 2687453341 Pirellula sp. SH-Sr6A Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.72
Metatranscriptomes 0.64
Isolates 0.64

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.46
Nodule 0
Rhizoplane 2.56
Rhizosphere 78.85
Stem 0
Stem Tuber 0
Unclassified 4.49

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0450908_002062 3300042184 Bacteria 3928
2 rootH2_10071060 3300003320 Bacteria 11809
3 Ga0070658_10039841 3300005327 Bacteria 3791
4 Ga0070683_100150410 3300005329 Bacteria 2207
5 Ga0068868_100077176 3300005338 Bacteria 2665
6 Ga0070689_100003768 3300005340 Bacteria 10151
7 Ga0070675_100056799 3300005354 Bacteria 3226
8 Ga0070675_100093018 3300005354 Bacteria 2528
9 Ga0070674_100007317 3300005356 Bacteria 6506
10 Ga0070674_100012849 3300005356 Bacteria 5155
11 Ga0070688_100024004 3300005365 Bacteria 3592
12 Ga0070663_100061508 3300005455 Bacteria 2704
13 Ga0070678_100000511 3300005456 Bacteria 18758
14 Ga0070679_100041529 3300005530 Bacteria 4577
15 Ga0070665_100000598 3300005548 Bacteria 50082
16 Ga0070665_100016273 3300005548 Bacteria 7462
17 Ga0070664_100004425 3300005564 Bacteria 11288
18 Ga0068854_100139861 3300005578 Bacteria 1856
19 Ga0068856_100093570 3300005614 Bacteria 2991
20 Ga0068864_100031640 3300005618 Bacteria 4491
21 Ga0068863_100038737 3300005841 Bacteria 4535
22 Ga0068863_100058803 3300005841 Bacteria 3638
23 Ga0068862_100177363 3300005844 Viruses 1911
24 Ga0075365_10033562 3300006038 Bacteria 3308
25 Ga0075364_10019269 3300006051 Bacteria 4281
26 Ga0075364_10092347 3300006051 Bacteria 2009
27 Ga0075367_10033569 3300006178 Bacteria 2959
28 Ga0075366_10011051 3300006195 Bacteria 5084
29 Ga0075366_10017847 3300006195 Bacteria 4092
30 Ga0075366_10020237 3300006195 Bacteria 3859
31 Ga0075366_10038081 3300006195 Bacteria 2840
32 Ga0075366_10074217 3300006195 Bacteria 2028
33 Ga0075370_10032095 3300006353 Bacteria 2934
34 Ga0075428_100127525 3300006844 Bacteria 2768
35 Ga0075428_100173387 3300006844 Bacteria 2337
36 Ga0111539_10000828 3300009094 Bacteria 40197
37 Ga0111539_10002170 3300009094 Bacteria 26233
38 Ga0111539_10014270 3300009094 Bacteria 9925
39 Ga0111539_10092203 3300009094 Bacteria 3560
40 Ga0105245_10079810 3300009098 Unclassified 2988
41 Ga0105248_10155824 3300009177 Bacteria 2577
42 Ga0105249_10001123 3300009553 Bacteria 23830
43 Ga0157377_10110386 3300014745 Viruses 1652
44 Ga0207697_10000133 3300025315 Bacteria 35922
45 Ga0207688_10007434 3300025901 Bacteria 5958
46 Ga0207705_10055586 3300025909 Bacteria 2854
47 Ga0207681_10001002 3300025923 Bacteria 18436
48 Ga0207650_10032254 3300025925 Bacteria 3789
49 Ga0207687_10079932 3300025927 Unclassified 2358
50 Ga0207670_10002378 3300025936 Bacteria 9855
51 Ga0207691_10010869 3300025940 Bacteria 8735
52 Ga0207651_10019543 3300025960 Bacteria 4063
53 Ga0207678_10030079 3300026067 Bacteria 4741
54 Ga0207678_10146425 3300026067 Bacteria 2016
55 Ga0207641_10044425 3300026088 Bacteria 3737
56 Ga0207674_10045015 3300026116 Bacteria 4542
57 Ga0207683_10219434 3300026121 Bacteria 1732
58 Ga0207428_10010239 3300027907 Bacteria 8379
59 Ga0268266_10000835 3300028379 Bacteria 40250
60 Ga0265319_1005072 3300028563 Bacteria 6394
61 Ga0265318_10000076 3300028577 Bacteria 94026
62 Ga0307515_10170082 3300028794 Bacteria 2177
63 Ga0265338_10013359 3300028800 Bacteria 9277
64 Ga0265320_10000031 3300031240 Bacteria 147045
65 Ga0265320_10005048 3300031240 Bacteria 8544
66 Ga0265325_10000395 3300031241 Bacteria 30923
67 Ga0265325_10004488 3300031241 Bacteria 8808
68 Ga0265329_10000227 3300031242 Bacteria 29823
69 Ga0265340_10022558 3300031247 Bacteria 3218
70 Ga0265339_10001938 3300031249 Bacteria 15212
71 Ga0265331_10000682 3300031250 Bacteria 29107
72 Ga0265331_10036474 3300031250 Bacteria 2413
73 Ga0265316_10004330 3300031344 Bacteria 14154
74 Ga0307509_10106581 3300031507 Bacteria 2821
75 Ga0307408_100015833 3300031548 Bacteria 5025
76 Ga0265313_10008469 3300031595 Bacteria 6822
77 Ga0316575_10023443 3300031665 Bacteria 2386
78 Ga0316579_10009048 3300031691 Bacteria 4179
79 Ga0265314_10002131 3300031711 Bacteria 20746
80 Ga0265314_10018012 3300031711 Bacteria 5523
81 Ga0265314_10081526 3300031711 Bacteria 2131
82 Ga0316578_10000122 3300031728 Bacteria 19112
83 Ga0307405_10052991 3300031731 Bacteria 2525
84 Ga0316577_10000144 3300031733 Bacteria 21624
85 Ga0316577_10028325 3300031733 Bacteria 3125
86 Ga0316577_10057385 3300031733 Bacteria 2173
87 Ga0307411_10189195 3300032005 Bacteria 1570
88 Ga0316580_10005173 3300032139 Bacteria 3797
89 Ga0316593_10030328 3300032168 Bacteria 1755
90 Ga0373929_0000002 3300035085 Bacteria 683932
91 Ga0373961_0002229 3300035241 Bacteria 5107
92 Ga0316582_0022252 3300036647 Bacteria 3761
93 Ga0316582_0054995 3300036647 Unclassified 2536
94 Ga0316582_0078584 3300036647 Bacteria 2150
95 Ga0316584_0003393 3300036712 Bacteria 10333
96 Ga0316584_0006547 3300036712 Bacteria 7891
97 Ga0395900_0044669 3300037418 Bacteria 4564
98 Ga0395905_0061135 3300037471 Bacteria 3523
99 Ga0395901_0032730 3300038443 Bacteria 5363
100 Ga0400489_82296 3300039093 Bacteria 13448
101 Ga0436365_0722228 3300039437 Bacteria 3054
102 Ga0451849_0355263 3300041505 Bacteria 7565
103 Ga0451853_0637315 3300041512 Bacteria 5009
104 Ga0451577_0207532 3300042876 Bacteria 1769
105 Ga0451577_0266201 3300042876 Bacteria 1552
106 Ga0453684_0001291 3300044712 Bacteria 74478
107 Ga0453684_0005383 3300044712 Bacteria 25425
108 Ga0453684_0029125 3300044712 Bacteria 7854
109 Ga0453684_0029584 3300044712 Bacteria 7771
110 Ga0453684_0099277 3300044712 Bacteria 3567
111 Ga0453684_0115117 3300044712 Unclassified 3258
112 Ga0495630_0018113 3300046517 Bacteria 5170
113 Ga0495672_0035285 3300047320 Bacteria 3081
114 Ga0495675_0021854 3300047444 Unclassified 4076
115 Ga0496105_0083205 3300048908 Bacteria 2643
116 Ga0496110_0039838 3300048913 Unclassified 4093
117 Ga0496114_0000038 3300048917 Bacteria 139215
118 Ga0496114_0034039 3300048917 Bacteria 4202
119 Ga0501034_0001997 3300049571 Bacteria 25805
120 Ga0501034_0005036 3300049571 Bacteria 14518
121 Ga0501034_0097975 3300049571 Bacteria 2928
122 Ga0501038_0143202 3300049574 Bacteria 1954
123 Ga0501042_0061906 3300049578 Bacteria 2673
124 Ga0501047_0006320 3300049581 Bacteria 11143
125 Ga0501067_0043518 3300049583 Bacteria 2494
126 Ga0501068_0049553 3300049584 Bacteria 2537
127 Ga0501072_0041953 3300049588 Bacteria 3594
128 Ga0501075_0001254 3300049591 Bacteria 16452
129 Ga0501075_0009837 3300049591 Bacteria 6702
130 Ga0501076_0056035 3300049592 Bacteria 3127
131 Ga0501077_0000136 3300049593 Bacteria 40352
132 Ga0501079_0012817 3300049741 Bacteria 6400
133 Ga0501080_0092034 3300049742 Bacteria 2816
134 Ga0501081_0020793 3300049743 Bacteria 4378
135 Ga0501083_0001174 3300049744 Bacteria 17661
136 Ga0501083_0018709 3300049744 Bacteria 4824
137 Ga0501044_0144112 3300049823 Bacteria 2369
138 Ga0501045_0103160 3300049824 Unclassified 2112
139 nmdc:mga00v17_89623_c1 3300050491 Bacteria 1930
140 nmdc:mga0k408_15739_c1 3300050493 Bacteria 4187
141 nmdc:mga0k408_21454_c1 3300050493 Bacteria 3628
142 nmdc:mga0k408_32276_c1 3300050493 Bacteria 2992
143 nmdc:mga0k408_6215_c1 3300050493 Bacteria 6372
144 nmdc:mga04h51_25123_c1 3300050495 Bacteria 1831
145 nmdc:mga07m45_2020_c1 3300050496 Bacteria 9409
146 nmdc:mga07m45_32947_c1 3300050496 Bacteria 2875
147 nmdc:mga0qj67_86002_c1 3300050509 Bacteria 2522
148 nmdc:mga06r32_324250_c1 3300050510 Bacteria 1525
149 nmdc:mga08y16_981_c1 3300050511 Bacteria 27786
150 Ga0500568_0011277 3300053139 Bacteria 4160
151 Ga0500616_0000286 3300053153 Bacteria 74130
152 Ga0500645_000150 3300053730 Bacteria 54398
153 Ga0501082_0000026 3300060353 Bacteria 101000
154 Ga0530510_0003636 3300061734 Bacteria 10612
155 Ga0530510_0017668 3300061734 Bacteria 5054
156 2688393880 2687453341 Bacteria 6534136
157 Ga0450908_002062
158 rootH2_10071060
159 Ga0070658_10039841
160 Ga0070683_100150410
161 Ga0068868_100077176
162 Ga0070689_100003768
163 Ga0070675_100056799
164 Ga0070675_100093018
165 Ga0070674_100007317
166 Ga0070674_100012849
167 Ga0070688_100024004
168 Ga0070663_100061508
169 Ga0070678_100000511
170 Ga0070679_100041529
171 Ga0070665_100000598
172 Ga0070665_100016273
173 Ga0070664_100004425
174 Ga0068854_100139861
175 Ga0068856_100093570
176 Ga0068864_100031640
177 Ga0068863_100038737
178 Ga0068863_100058803
179 Ga0068862_100177363
180 Ga0075365_10033562
181 Ga0075364_10019269
182 Ga0075364_10092347
183 Ga0075367_10033569
184 Ga0075366_10011051
185 Ga0075366_10017847
186 Ga0075366_10020237
187 Ga0075366_10038081
188 Ga0075366_10074217
189 Ga0075370_10032095
190 Ga0075428_100127525
191 Ga0075428_100173387
192 Ga0111539_10000828
193 Ga0111539_10002170
194 Ga0111539_10014270
195 Ga0111539_10092203
196 Ga0105245_10079810
197 Ga0105248_10155824
198 Ga0105249_10001123
199 Ga0157377_10110386
200 Ga0207697_10000133
201 Ga0207688_10007434
202 Ga0207705_10055586
203 Ga0207681_10001002
204 Ga0207650_10032254
205 Ga0207687_10079932
206 Ga0207670_10002378
207 Ga0207691_10010869
208 Ga0207651_10019543
209 Ga0207678_10030079
210 Ga0207678_10146425
211 Ga0207641_10044425
212 Ga0207674_10045015
213 Ga0207683_10219434
214 Ga0207428_10010239
215 Ga0268266_10000835
216 Ga0265319_1005072
217 Ga0265318_10000076
218 Ga0307515_10170082
219 Ga0265338_10013359
220 Ga0265320_10000031
221 Ga0265320_10005048
222 Ga0265325_10000395
223 Ga0265325_10004488
224 Ga0265329_10000227
225 Ga0265340_10022558
226 Ga0265339_10001938
227 Ga0265331_10000682
228 Ga0265331_10036474
229 Ga0265316_10004330
230 Ga0307509_10106581
231 Ga0307408_100015833
232 Ga0265313_10008469
233 Ga0316575_10023443
234 Ga0316579_10009048
235 Ga0265314_10002131
236 Ga0265314_10018012
237 Ga0265314_10081526
238 Ga0316578_10000122
239 Ga0307405_10052991
240 Ga0316577_10000144
241 Ga0316577_10028325
242 Ga0316577_10057385
243 Ga0307411_10189195
244 Ga0316580_10005173
245 Ga0316593_10030328
246 Ga0373929_0000002
247 Ga0373961_0002229
248 Ga0316582_0022252
249 Ga0316582_0054995
250 Ga0316582_0078584
251 Ga0316584_0003393
252 Ga0316584_0006547
253 Ga0395900_0044669
254 Ga0395905_0061135
255 Ga0395901_0032730
256 Ga0400489_82296
257 Ga0436365_0722228
258 Ga0451849_0355263
259 Ga0451853_0637315
260 Ga0451577_0207532
261 Ga0451577_0266201
262 Ga0453684_0001291
263 Ga0453684_0005383
264 Ga0453684_0029125
265 Ga0453684_0029584
266 Ga0453684_0099277
267 Ga0453684_0115117
268 Ga0495630_0018113
269 Ga0495672_0035285
270 Ga0495675_0021854
271 Ga0496105_0083205
272 Ga0496110_0039838
273 Ga0496114_0000038
274 Ga0496114_0034039
275 Ga0501034_0001997
276 Ga0501034_0005036
277 Ga0501034_0097975
278 Ga0501038_0143202
279 Ga0501042_0061906
280 Ga0501047_0006320
281 Ga0501067_0043518
282 Ga0501068_0049553
283 Ga0501072_0041953
284 Ga0501075_0001254
285 Ga0501075_0009837
286 Ga0501076_0056035
287 Ga0501077_0000136
288 Ga0501079_0012817
289 Ga0501080_0092034
290 Ga0501081_0020793
291 Ga0501083_0001174
292 Ga0501083_0018709
293 Ga0501044_0144112
294 Ga0501045_0103160
295 nmdc:mga00v17_89623_c1
296 nmdc:mga0k408_15739_c1
297 nmdc:mga0k408_21454_c1
298 nmdc:mga0k408_32276_c1
299 nmdc:mga0k408_6215_c1
300 nmdc:mga04h51_25123_c1
301 nmdc:mga07m45_2020_c1
302 nmdc:mga07m45_32947_c1
303 nmdc:mga0qj67_86002_c1
304 nmdc:mga06r32_324250_c1
305 nmdc:mga08y16_981_c1
306 Ga0500568_0011277
307 Ga0500616_0000286
308 Ga0500645_000150
309 Ga0501082_0000026
310 Ga0530510_0003636
311 Ga0530510_0017668
312 2688393880

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Structural Annotation

Top 5 Hits

ID Description Score Start End
7yek-assembly2.cif.gz_B tr-sfx mmcpdii-dna complex: 500 ns time-point collected in sacla. includes 500 ns, dark, and extrapolated structure factors 0.9312 3 490
8oy9-assembly2.cif.gz_B time-resolved sfx structure of the class ii photolyase complexed with a thymine dimer (1 microsecond pump-probe delay) 0.9269 7 489
7ycm-assembly2.cif.gz_B tr-sfx mmcpdii-dna complex: 100 ps snapshot. includes 100ps, dark, and extrapolated structure factors 0.9266 3 490
8oyb-assembly2.cif.gz_B time-resolved sfx structure of the class ii photolyase complexed with a thymine dimer (30 microsecond pump-probe delay) 0.9262 4 491
8oyb-assembly2.cif.gz_B time-resolved sfx structure of the class ii photolyase complexed with a thymine dimer (30 microsecond pump-probe delay) 0.922 4 491
ID Description Score Start End Superfamily
af_A0A1D6KCC6_330_425_1.10.579.10 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9702 351 437 1.10.579.10
af_A0A1D6GYW3_1_143_1.25.40.80 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.9416 239 293 1.25.40.80
af_Q8I0W8_927_1074_1.10.579.10 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9397 350 498 1.10.579.10
af_Q8I0W8_927_1074_1.10.579.10 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9275 350 498 1.10.579.10
1u3dA02 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.9175 238 292 1.25.40.80
ID Description Score Start End GO Terms
AF-A0A6N9A5S8-F1-model_v4 Deoxyribodipyrimidine photolyase 0.9931 27 187 GO:0000719
GO:0003904
AF-A0A7J4SCB9-F1-model_v4 Cryptochrome/DNA photolyase FAD-binding domain-containing protein 0.9927 323 491 GO:0000719
GO:0003904
AF-A0A3D4V2C6-F1-model_v4 Uncharacterized protein 0.9923 325 489 GO:0000719
GO:0003904
AF-A0A7W0VRM1-F1-model_v4 Deoxyribodipyrimidine photolyase 0.9885 367 490 GO:0000719
GO:0003904
AF-A0A6N8VV02-F1-model_v4 deleted 0.9883 347 492

Map