F224793

General Info

Members Datasets Scaffolds Average Seq Length
156 119 149 839

Family's Representative Sequence

Representative Sequence 3300009551|Ga0105238_10006250|Ga0105238_100062502
Length 926
Sequence LTGREAGHDHARVEEARRLRASRVLLGLMVPSGFAGLGYQIVWTTQSATWLGHEAASVLAVVGAFFGGLARIEASPHPRRVYAACELVLGGWGASLLAGLPTWSGWLMSAMGPQPPPWRQWAVGFGGTLLALLPATAAMGATLPAMERLASMGATDRPERPAGGAPGRSVAALYAANTLGAVLGVLATAFCLIPRWGLARSGLVCVALNVMCAALALALLPRRAXXXSVTTGGARGDPDPAEGALPLSLPNRRARRLQAQLAATGFLGIGYEVVVVRVLSQVSEDTVYTFALLLAVYLVGTAIGAAAYHRRGKGPRARHGPGSPAPADGFTDRLLAALAVACLGGAASLWGAEAIKALATRLLGSGIAAALAAEMAPALLAFGPPTVVMGAVFSHLSRQARAAGVTFGRSLGVNTLAAAAAPVVFGVVALPSLGAKLALGAIVIGYILTAGPHVWRRPRATPPLAFVEVPDGGRVVSYREGVLGAVSVVADAEGVTRLRIDNRQQEGSSATWRVDARQAWLPLLLHPGPRRALFLGLGTGVTAASAADDPAMEVDAVELLPEVIAASAHFRAPETESGPSAPVPGPARLHVIAGDARRFVRATRRRYDVIVADNFHPARSGSGALYTVEHFEAVRARLEAGGLFCQWLPLHQLDLPTVRSIVRSFVTVNRQAWAVLASNSLETPVLGLLARAQAGGSDGRDQGESWRDDEARFDEIEIRARLASLARSALPERATRLGFEDELAVLGSAVAGPAALRRFADGAPANTDDHPVVTYRAPRLTYAPASSPRDRLLELVTELGVAVPEEWLASPQRDRAFAARLAAYWTARNQFLSSGRGVRPTARVEEMLAQVREPLLGVLRLSPDFRPAYDPLLAMAATLARTDASGARVLLAELTRLQPARVEAPRLLAALDGATSQGAVSENRKQ

Samples

Sample ID Description Type Environment
1 2643221585 Pelomonas sp. Root662 Isolate Unclassified
2 2643221639 Pelomonas sp. Root1217 Isolate Unclassified
3 2643221646 Pelomonas sp. Root1237 Isolate Unclassified
4 2643221654 Rhizobacter sp. Root404 Isolate Unclassified
5 2643221656 Pelomonas sp. Root405 Isolate Unclassified
6 2738541337 Pelomonas sp. BT06 Isolate Unclassified
7 2831864461 Roseateles noduli HZ7 Isolate Nodule
8 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
9 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
10 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
11 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
12 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
13 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
14 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
17 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
21 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
22 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
23 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
26 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
27 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
28 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
29 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
30 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
31 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
36 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
37 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
38 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
39 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
40 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
54 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
55 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
56 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
57 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
58 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
59 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
60 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
61 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
62 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
63 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
64 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
65 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
66 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
67 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
68 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
69 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
70 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
71 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
72 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
73 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
74 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
75 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
76 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
77 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
78 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
79 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
80 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
81 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
82 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
83 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
84 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
85 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
86 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
87 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
88 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
89 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
90 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
91 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
92 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
93 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
94 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
95 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
96 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
97 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
98 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
99 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
100 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
101 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
102 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
103 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
104 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
105 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
106 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
107 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
108 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
109 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
110 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
111 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
112 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
113 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
114 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
115 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
116 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
117 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
118 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
119 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.51
Metatranscriptomes 0
Isolates 4.49

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 16.67
Nodule 0.64
Rhizoplane 2.56
Rhizosphere 52.56
Stem 0
Stem Tuber 0
Unclassified 27.56

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10006395 3300003203 Bacteria 5432
2 rootH2_10090806 3300003320 Bacteria 5634
3 rootL2_10104643 3300003322 Bacteria 3820
4 rootH1_10039082 3300003323 Bacteria 9629
5 Ga0055531_10000060 3300003794 Bacteria 120626
6 Ga0055531_10000534 3300003794 Bacteria 33773
7 Ga0070682_100004533 3300005337 Bacteria 7717
8 Ga0070682_100006797 3300005337 Bacteria 6419
9 Ga0070669_100017645 3300005353 Bacteria 5091
10 Ga0070673_100060010 3300005364 Bacteria 3012
11 Ga0070706_100003301 3300005467 Bacteria 15955
12 Ga0070684_100009259 3300005535 Bacteria 7751
13 Ga0070665_100017502 3300005548 Bacteria 7196
14 Ga0068855_100000461 3300005563 Bacteria 50020
15 Ga0068855_100010575 3300005563 Bacteria 11126
16 Ga0068859_100020753 3300005617 Bacteria 6593
17 Ga0068864_100041972 3300005618 Bacteria 3914
18 Ga0068863_100001654 3300005841 Bacteria 22045
19 Ga0068858_100014011 3300005842 Bacteria 7565
20 Ga0068858_100014963 3300005842 Bacteria 7301
21 Ga0068858_100032630 3300005842 Bacteria 4835
22 Ga0068860_100002002 3300005843 Bacteria 21489
23 Ga0081455_10000463 3300005937 Bacteria 52989
24 Ga0081539_10003191 3300005985 Bacteria 20733
25 Ga0075366_10003217 3300006195 Bacteria 8574
26 Ga0075366_10028128 3300006195 Bacteria 3299
27 Ga0075370_10000329 3300006353 Bacteria 17142
28 Ga0075370_10000605 3300006353 Bacteria 13863
29 Ga0075370_10017624 3300006353 Bacteria 3862
30 Ga0075430_100066704 3300006846 Bacteria 3022
31 Ga0075436_100005293 3300006914 Bacteria 8874
32 Ga0097620_100020754 3300006931 Bacteria 6593
33 Ga0075435_100052750 3300007076 Bacteria 3277
34 Ga0105240_10037480 3300009093 Bacteria 6231
35 Ga0105240_10077234 3300009093 Bacteria 4103
36 Ga0114129_10043825 3300009147 Bacteria 6295
37 Ga0105248_10004877 3300009177 Bacteria 14834
38 Ga0105238_10006250 3300009551 Bacteria 11834
39 Ga0105238_10086130 3300009551 Unclassified 3129
40 Ga0099796_10001102 3300010159 Bacteria 5178
41 Ga0105239_10008553 3300010375 Bacteria 11619
42 Ga0157376_10012028 3300014969 Bacteria 6406
43 Ga0209050_1001789 3300025298 Bacteria 21156
44 Ga0209051_1000214 3300025303 Bacteria 98444
45 Ga0209257_1000015 3300025304 Bacteria 908141
46 Ga0209257_1000103 3300025304 Bacteria 245859
47 Ga0209257_1013109 3300025304 Bacteria 3732
48 Ga0207705_10004242 3300025909 Bacteria 10857
49 Ga0207684_10007994 3300025910 Bacteria 9448
50 Ga0207681_10007976 3300025923 Bacteria 6475
51 Ga0207694_10043225 3300025924 Bacteria 3478
52 Ga0207689_10002673 3300025942 Bacteria 16477
53 Ga0207667_10000212 3300025949 Bacteria 82031
54 Ga0207667_10015313 3300025949 Bacteria 8719
55 Ga0207651_10045841 3300025960 Bacteria 2935
56 Ga0207708_10000339 3300026075 Bacteria 36860
57 Ga0207648_10003601 3300026089 Bacteria 16199
58 Ga0268264_10000499 3300028381 Bacteria 51388
59 Ga0265318_10000027 3300028577 Bacteria 153682
60 Ga0307517_10043235 3300028786 Bacteria 4805
61 Ga0307515_10001985 3300028794 Bacteria 45299
62 Ga0265330_10000036 3300031235 Bacteria 121416
63 Ga0265332_10003895 3300031238 Bacteria 7118
64 Ga0265320_10000018 3300031240 Bacteria 183411
65 Ga0265339_10000924 3300031249 Bacteria 22559
66 Ga0265339_10010287 3300031249 Bacteria 5819
67 Ga0265331_10000046 3300031250 Bacteria 183360
68 Ga0265327_10000158 3300031251 Bacteria 145905
69 Ga0265316_10005403 3300031344 Bacteria 12418
70 Ga0265316_10006718 3300031344 Bacteria 10962
71 Ga0307513_10008832 3300031456 Bacteria 12831
72 Ga0307509_10000014 3300031507 Bacteria 276789
73 Ga0307509_10000226 3300031507 Bacteria 90768
74 Ga0307509_10000679 3300031507 Bacteria 58021
75 Ga0307509_10007652 3300031507 Bacteria 14037
76 Ga0307509_10053330 3300031507 Bacteria 4313
77 Ga0307408_100000038 3300031548 Bacteria 183170
78 Ga0265313_10000075 3300031595 Bacteria 97534
79 Ga0265313_10007447 3300031595 Bacteria 7480
80 Ga0307508_10001463 3300031616 Bacteria 26487
81 Ga0307514_10000738 3300031649 Bacteria 55551
82 Ga0265314_10000002 3300031711 Bacteria 2092193
83 Ga0265314_10000137 3300031711 Bacteria 109629
84 Ga0265342_10001546 3300031712 Bacteria 21272
85 Ga0316576_10020911 3300031727 Unclassified 4515
86 Ga0316576_10025457 3300031727 Unclassified 4142
87 Ga0307516_10002468 3300031730 Bacteria 24685
88 Ga0307516_10031359 3300031730 Bacteria 5358
89 Ga0307510_10000010 3300033180 Bacteria 377457
90 Ga0307510_10004164 3300033180 Bacteria 16982
91 Ga0307510_10042995 3300033180 Bacteria 4915
92 Ga0373950_0000035 3300034818 Bacteria 143267
93 Ga0373950_0000039 3300034818 Bacteria 117813
94 Ga0373949_0000321 3300035090 Bacteria 17052
95 Ga0373939_0000025 3300035114 Bacteria 54551
96 Ga0373960_0001160 3300035121 Bacteria 5729
97 Ga0373943_0007120 3300035170 Bacteria 5020
98 Ga0316584_0001185 3300036712 Bacteria 15406
99 Ga0395905_0004144 3300037471 Bacteria 15172
100 Ga0436365_0305462 3300039437 Bacteria 3166
101 Ga0451851_0345574 3300041507 Bacteria 4410
102 Ga0451853_0586604 3300041512 Bacteria 24628
103 Ga0450911_000151 3300042115 Bacteria 27938
104 Ga0453684_0028512 3300044712 Bacteria 7961
105 Ga0495638_0001106 3300046460 Bacteria 26222
106 Ga0495638_0004197 3300046460 Bacteria 10977
107 Ga0495610_0024137 3300046512 Bacteria 3287
108 Ga0495634_0008039 3300046642 Bacteria 7871
109 Ga0495625_0001640 3300046660 Bacteria 26298
110 Ga0495674_0000947 3300047319 Bacteria 27655
111 Ga0495680_0068773 3300047322 Bacteria 2704
112 Ga0495686_0000749 3300047472 Bacteria 42954
113 Ga0496101_0052331 3300048904 Bacteria 2944
114 Ga0496106_0019675 3300048909 Bacteria 5009
115 Ga0496114_0024156 3300048917 Bacteria 4960
116 Ga0496115_0020026 3300048918 Bacteria 5155
117 Ga0496117_0000152 3300048920 Bacteria 147897
118 Ga0496118_0000052 3300048921 Bacteria 237465
119 Ga0496119_0000151 3300048922 Bacteria 96860
120 Ga0496119_0001275 3300048922 Bacteria 31240
121 Ga0496120_0000286 3300048923 Bacteria 84869
122 Ga0496120_0020351 3300048923 Bacteria 4219
123 Ga0496121_0002415 3300048924 Bacteria 28634
124 Ga0496121_0014825 3300048924 Bacteria 8230
125 Ga0496122_0000342 3300048925 Bacteria 100753
126 Ga0496123_0000057 3300048926 Bacteria 228608
127 Ga0496124_0000504 3300048927 Bacteria 67117
128 Ga0496124_0058826 3300048927 Bacteria 3230
129 Ga0496124_0065668 3300048927 Bacteria 3024
130 Ga0496125_0001192 3300048928 Bacteria 39310
131 Ga0496125_0003839 3300048928 Bacteria 17828
132 Ga0496125_0004156 3300048928 Bacteria 16884
133 Ga0501067_0000107 3300049583 Bacteria 47662
134 Ga0501073_0000095 3300049589 Bacteria 56422
135 nmdc:mga0k408_20994_c1 3300050493 Bacteria 3665
136 nmdc:mga0k408_3540_c1 3300050493 Bacteria 8250
137 nmdc:mga07m45_2236_c1 3300050496 Bacteria 9041
138 nmdc:mga07m45_6893_c1 3300050496 Bacteria 5778
139 nmdc:mga06r32_12958_c1 3300050510 Bacteria 7539
140 Ga0500635_0000041 3300053080 Bacteria 90865
141 Ga0500644_0003916 3300053088 Bacteria 3706
142 Ga0500566_0003470 3300053094 Bacteria 9409
143 Ga0500650_0000011 3300053098 Bacteria 81697
144 Ga0500559_0000013 3300053136 Bacteria 163436
145 Ga0500564_002881 3300053138 Bacteria 6506
146 Ga0500588_0000539 3300053146 Bacteria 6136
147 Ga0500616_0000018 3300053153 Bacteria 610976
148 Ga0500616_0006738 3300053153 Bacteria 7454
149 Ga0500622_0005489 3300053156 Bacteria 7609

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300047322 Ga0495680_0068773 Ga0495680_0068773_24_2282 651
2 3300025909 Ga0207705_10004242 Ga0207705_100042425 667
3 3300006914 Ga0075436_100005293 Ga0075436_1000052933 670
4 3300048927 Ga0496124_0000504 Ga0496124_0000504_60427_63030 678
5 3300003322 rootL2_10104643 rootL2_101046432 687
6 3300003323 rootH1_10039082 rootH1_100390824 687
7 3300046642 Ga0495634_0008039 Ga0495634_0008039_5193_7820 689
8 3300047319 Ga0495674_0000947 Ga0495674_0000947_21634_24261 689
9 3300028794 Ga0307515_10001985 Ga0307515_1000198527 696
10 3300031649 Ga0307514_10000738 Ga0307514_1000073832 696
11 3300039437 Ga0436365_0305462 Ga0436365_0305462_366_2942 699
12 3300025304 Ga0209257_1013109 Ga0209257_10131092 702
13 3300046512 Ga0495610_0024137 Ga0495610_0024137_481_3075 705
14 3300053088 Ga0500644_0003916 Ga0500644_0003916_1027_3630 705
15 3300053136 Ga0500559_0000013 Ga0500559_0000013_155073_157676 705
16 3300005535 Ga0070684_100009259 Ga0070684_1000092594 707
17 3300053146 Ga0500588_0000539 Ga0500588_0000539_2011_4548 707
18 3300042115 Ga0450911_000151 Ga0450911_000151_15145_17706 710
19 3300048917 Ga0496114_0024156 Ga0496114_0024156_1546_4098 710
20 3300034818 Ga0373950_0000039 Ga0373950_0000039_57826_60390 713
21 3300031616 Ga0307508_10001463 Ga0307508_1000146310 714
22 3300034818 Ga0373950_0000035 Ga0373950_0000035_112556_115153 714
23 3300049583 Ga0501067_0000107 Ga0501067_0000107_22891_25488 714
24 3300049589 Ga0501073_0000095 Ga0501073_0000095_31469_34066 714
25 3300031507 Ga0307509_10007652 Ga0307509_100076525 716
26 3300035114 Ga0373939_0000025 Ga0373939_0000025_20733_23159 716
27 3300035121 Ga0373960_0001160 Ga0373960_0001160_2752_5178 716
28 3300053094 Ga0500566_0003470 Ga0500566_0003470_5907_8492 716
29 3300025298 Ga0209050_1001789 Ga0209050_10017898 717
30 3300025304 Ga0209257_1000103 Ga0209257_100010384 717
31 iso_pu_bacteria 2643221646 2644259871 717
32 3300003794 Ga0055531_10000060 Ga0055531_1000006016 721
33 3300006846 Ga0075430_100066704 Ga0075430_1000667042 721
34 3300009147 Ga0114129_10043825 Ga0114129_100438252 721
35 3300050510 nmdc:mga06r32_12958_c1 nmdc:mga06r32_12958_c1_5028_7463 721
36 3300031548 Ga0307408_100000038 Ga0307408_100000038121 722
37 iso_pu_bacteria 2643221639 2644221029 724
38 3300028577 Ga0265318_10000027 Ga0265318_100000273 725
39 3300031235 Ga0265330_10000036 Ga0265330_10000036103 725
40 3300031240 Ga0265320_10000018 Ga0265320_10000018160 725
41 3300031249 Ga0265339_10000924 Ga0265339_100009242 725
42 3300031250 Ga0265331_10000046 Ga0265331_10000046159 725
43 3300031344 Ga0265316_10006718 Ga0265316_100067182 725
44 3300031595 Ga0265313_10000075 Ga0265313_100000753 725
45 3300031711 Ga0265314_10000137 Ga0265314_100001373 725
46 3300037471 Ga0395905_0004144 Ga0395905_0004144_7933_10365 725
47 iso_pu_bacteria 2643221585 2643935567 725
48 iso_pu_bacteria 2643221656 2644317350 725
49 iso_pu_bacteria 2738541337 2739057532 725
50 3300003794 Ga0055531_10000534 Ga0055531_100005348 726
51 3300025303 Ga0209051_1000214 Ga0209051_100021419 726
52 3300025304 Ga0209257_1000015 Ga0209257_1000015374 726
53 3300031507 Ga0307509_10000679 Ga0307509_1000067926 726
54 3300031595 Ga0265313_10007447 Ga0265313_100074472 727
55 3300031238 Ga0265332_10003895 Ga0265332_100038953 728
56 3300031344 Ga0265316_10005403 Ga0265316_100054034 728
57 3300031711 Ga0265314_10000002 Ga0265314_100000021648 729
58 3300006353 Ga0075370_10000605 Ga0075370_100006057 730
59 3300050496 nmdc:mga07m45_2236_c1 nmdc:mga07m45_2236_c1_911_3475 730
60 3300009093 Ga0105240_10037480 Ga0105240_100374804 731
61 3300010375 Ga0105239_10008553 Ga0105239_100085538 731
62 3300005467 Ga0070706_100003301 Ga0070706_10000330111 732
63 3300025910 Ga0207684_10007994 Ga0207684_100079945 732
64 3300031507 Ga0307509_10053330 Ga0307509_100533303 732
65 3300031730 Ga0307516_10031359 Ga0307516_100313593 732
66 3300025924 Ga0207694_10043225 Ga0207694_100432251 733
67 3300005563 Ga0068855_100000461 Ga0068855_10000046131 736
68 3300025949 Ga0207667_10000212 Ga0207667_100002127 736
69 3300048927 Ga0496124_0058826 Ga0496124_0058826_89_2617 736
70 3300053153 Ga0500616_0006738 Ga0500616_0006738_2576_5215 736
71 3300047472 Ga0495686_0000749 Ga0495686_0000749_34500_37046 737
72 3300048909 Ga0496106_0019675 Ga0496106_0019675_137_2743 737
73 3300031712 Ga0265342_10001546 Ga0265342_100015469 738
74 3300048924 Ga0496121_0002415 Ga0496121_0002415_21595_24150 738
75 3300031249 Ga0265339_10010287 Ga0265339_100102872 739
76 3300005353 Ga0070669_100017645 Ga0070669_1000176451 740
77 3300025923 Ga0207681_10007976 Ga0207681_100079762 740
78 3300031251 Ga0265327_10000158 Ga0265327_1000015867 740
79 3300031507 Ga0307509_10000014 Ga0307509_1000001455 740
80 3300033180 Ga0307510_10004164 Ga0307510_1000416412 740
81 3300048925 Ga0496122_0000342 Ga0496122_0000342_72434_75043 740
82 3300048926 Ga0496123_0000057 Ga0496123_0000057_129800_132409 740
83 3300006195 Ga0075366_10003217 Ga0075366_100032172 741
84 3300028786 Ga0307517_10043235 Ga0307517_100432353 741
85 3300053080 Ga0500635_0000041 Ga0500635_0000041_5838_8420 741
86 3300005337 Ga0070682_100004533 Ga0070682_1000045333 742
87 3300005337 Ga0070682_100006797 Ga0070682_1000067974 743
88 3300005937 Ga0081455_10000463 Ga0081455_100004632 743
89 3300010159 Ga0099796_10001102 Ga0099796_100011022 743
90 3300031730 Ga0307516_10002468 Ga0307516_1000246819 743
91 3300007076 Ga0075435_100052750 Ga0075435_1000527502 745
92 3300050493 nmdc:mga0k408_3540_c1 nmdc:mga0k408_3540_c1_455_3082 745
93 3300005617 Ga0068859_100020753 Ga0068859_1000207534 746
94 3300005842 Ga0068858_100014963 Ga0068858_1000149633 746
95 3300006931 Ga0097620_100020754 Ga0097620_1000207544 746
96 3300048928 Ga0496125_0001192 Ga0496125_0001192_25383_28001 746
97 3300053153 Ga0500616_0000018 Ga0500616_0000018_412991_415642 746
98 3300003320 rootH2_10090806 rootH2_100908065 747
99 3300035170 Ga0373943_0007120 Ga0373943_0007120_430_3039 747
100 3300006353 Ga0075370_10000329 Ga0075370_1000032915 748
101 3300009551 Ga0105238_10086130 Ga0105238_100861302 748
102 3300048924 Ga0496121_0014825 Ga0496121_0014825_3251_5815 748
103 3300048928 Ga0496125_0003839 Ga0496125_0003839_1037_3601 748
104 3300005364 Ga0070673_100060010 Ga0070673_1000600102 749
105 3300005563 Ga0068855_100010575 Ga0068855_1000105752 750
106 3300009551 Ga0105238_10006250 Ga0105238_100062502 750
107 3300025949 Ga0207667_10015313 Ga0207667_100153132 750
108 3300031456 Ga0307513_10008832 Ga0307513_100088322 750
109 3300053098 Ga0500650_0000011 Ga0500650_0000011_45473_48100 750
110 3300005548 Ga0070665_100017502 Ga0070665_1000175024 751
111 3300009093 Ga0105240_10077234 Ga0105240_100772342 751
112 3300048904 Ga0496101_0052331 Ga0496101_0052331_92_2668 751
113 3300048918 Ga0496115_0020026 Ga0496115_0020026_1961_4537 751
114 iso_pu_bacteria 2831864461 2831868453 751
115 3300025960 Ga0207651_10045841 Ga0207651_100458411 752
116 3300035090 Ga0373949_0000321 Ga0373949_0000321_13967_16498 752
117 3300046460 Ga0495638_0004197 Ga0495638_0004197_4603_7161 752
118 3300048920 Ga0496117_0000152 Ga0496117_0000152_69363_71951 752
119 3300048921 Ga0496118_0000052 Ga0496118_0000052_111900_114488 752
120 3300048922 Ga0496119_0001275 Ga0496119_0001275_10180_12888 752
121 3300048923 Ga0496120_0020351 Ga0496120_0020351_324_3032 752
122 3300048927 Ga0496124_0065668 Ga0496124_0065668_363_2951 752
123 3300048928 Ga0496125_0004156 Ga0496125_0004156_13333_16041 752
124 3300005842 Ga0068858_100014011 Ga0068858_1000140117 753
125 3300026075 Ga0207708_10000339 Ga0207708_1000033911 753
126 3300026089 Ga0207648_10003601 Ga0207648_100036014 753
127 3300033180 Ga0307510_10000010 Ga0307510_10000010204 753
128 3300041507 Ga0451851_0345574 Ga0451851_0345574_1839_4400 753
129 3300041512 Ga0451853_0586604 Ga0451853_0586604_20583_23144 753
130 3300048922 Ga0496119_0000151 Ga0496119_0000151_10298_12865 753
131 3300048923 Ga0496120_0000286 Ga0496120_0000286_61510_64077 753
132 3300006353 Ga0075370_10017624 Ga0075370_100176242 754
133 3300005618 Ga0068864_100041972 Ga0068864_1000419722 755
134 3300005841 Ga0068863_100001654 Ga0068863_10000165418 755
135 3300005842 Ga0068858_100032630 Ga0068858_1000326302 755
136 3300005843 Ga0068860_100002002 Ga0068860_10000200212 755
137 3300009177 Ga0105248_10004877 Ga0105248_100048779 755
138 3300014969 Ga0157376_10012028 Ga0157376_100120284 755
139 3300025942 Ga0207689_10002673 Ga0207689_100026736 755
140 3300028381 Ga0268264_10000499 Ga0268264_1000049913 755
141 3300031727 Ga0316576_10020911 Ga0316576_100209111 755
142 3300031727 Ga0316576_10025457 Ga0316576_100254571 755
143 3300033180 Ga0307510_10042995 Ga0307510_100429952 755
144 3300036712 Ga0316584_0001185 Ga0316584_0001185_9854_12502 755
145 3300053156 Ga0500622_0005489 Ga0500622_0005489_2285_4972 755
146 3300053138 Ga0500564_002881 Ga0500564_002881_1910_4576 756
147 3300006195 Ga0075366_10028128 Ga0075366_100281282 757
148 3300031507 Ga0307509_10000226 Ga0307509_1000022621 757
149 3300044712 Ga0453684_0028512 Ga0453684_0028512_1311_3935 757
150 3300046460 Ga0495638_0001106 Ga0495638_0001106_22393_25002 757
151 3300046660 Ga0495625_0001640 Ga0495625_0001640_20930_23539 757
152 3300050493 nmdc:mga0k408_20994_c1 nmdc:mga0k408_20994_c1_514_3165 757
153 3300050496 nmdc:mga07m45_6893_c1 nmdc:mga07m45_6893_c1_2552_5188 757
154 iso_pu_bacteria 2643221654 2644301567 757
155 3300003203 JGI25406J46586_10006395 JGI25406J46586_100063952 761
156 3300005985 Ga0081539_10003191 Ga0081539_100031917 761

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01564

Spermine_synth

Spermine/spermidine synthase domain

518

676

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
6o64-assembly1.cif.gz_B crystal structure of arabidopsis thaliana spermidine synthase isoform 2 (atspds2) 0.7068 386 579
6bq2-assembly1.cif.gz_B crystal structure of medicago truncatula thermospermine synthase (mttsps) 0.6963 393 590
4yuv-assembly1.cif.gz_A crystal structure of trypanosoma cruzi spermidine synthase in complex with decarboxylated s-adenosylmethionine 0.6858 394 627
2o05-assembly1.cif.gz_B human spermidine synthase 0.6843 393 628
4yv1-assembly2.cif.gz_D crystal structure of trypanosoma cruzi spermidine synthase in complex with quinolin-8-yl piperidine-1-carboxylate 0.6801 394 577
ID Description Score Start End Superfamily
1jq3D01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.7864 430 578 3.40.50.150
af_Q2FXH1_4_180_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.7768 4 192 1.20.1250.20
af_Q4DPM4_255_475_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.7492 435 576 3.40.50.150
af_K7ML12_100_280_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.7466 2 191 1.20.1250.20
af_O01735_368_566_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.7307 4 197 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A3M1AGZ5-F1-model_v4 Spermidine synthase 0.9492 5 177 GO:0016020
AF-A0A3L8C800-F1-model_v4 Spermidine synthase 0.8947 2 757 GO:0006596
GO:0016020
AF-A0A3M1AGZ5-F1-model_v4 Spermidine synthase 0.8896 5 177 GO:0016020
AF-A0A3L8C800-F1-model_v4 Spermidine synthase 0.888 2 757 GO:0006596
GO:0016020
AF-A0A7C3KAY3-F1-model_v4 Spermidine synthase 0.8668 4 757 GO:0006596
GO:0016020
GO:0016740

Feature Viewer

pLDDT pTM Quality
78.27 0.79 High
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Predicted Structure (AlphaFold2)

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