F223380

General Info

Members Datasets Scaffolds Average Seq Length
155 136 120 545

Family's Representative Sequence

Representative Sequence 3300050510|nmdc:mga06r32_27166_c1|nmdc:mga06r32_27166_c1_493_2283
Length 596
Sequence MMEVTRPCRATRAIQYRFARQRPDAVAGTTVEEDRRTGVDLGGVAVSESIFDPWKRVDELLARYGDEQASVAELLCDRYPADTVAYTVVAPDLSQQVLTHGELRESSERFAAALADLGVRQGDRVATLMGKSAELLVTLLGIWRLGAVQVPLFTAFAPNTIATRLSDSGAKVVVCDQEQRPKLAVATPGTVAGTRQIVVAGKPQQLTDLAFDDLLARHNLGFEAVALDSDAPLMQMYTSGTTGLPKGLLVPKRALAAFHAYMEFALDLRSDDVFWNAADTAWGYGLHFGIVGSLCAGVPSVLLQGGFSAETTFAVLSKLGVTNYTAAPTVYRALRGSGIEVPADLRLRRASAAGEPLTPEVNQWAEQALGVRVHDHYGQTETGMLINNHHHPALRRPLRPGSMGHPMPGWKAEVLYDDRDAPAPRGTVGRIAFDLVGSPLAWFTGYLGRPEKTAEKFTRNGRWYLTGDAGTVDEDGYFHFLSRDDDLIIMAGYRIGPFDVESVLLTHPAVAEAAVIAAPDQLRGEVLEAYVVLRDGHTDSPELAEELQQLVKSEYAAHAYPRQVHFTSALPKTPSGKIKRNALRQRRRAELEAALS

Samples

Sample ID Description Type Environment
1 2582581280 Caulobacter henricii CF287 Isolate Rhizosphere
2 2582581293 Caulobacter henricii YR570 Isolate Rhizosphere
3 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
4 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
5 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
6 2599185292 Achromobacter sp. NFACC18-2 Isolate Rhizoplane
7 2643221569 Achromobacter sp. Root565 Isolate Unclassified
8 2643221645 Massilia sp. Root351 Isolate Unclassified
9 2643221647 Streptomyces sp. Root369 Isolate Unclassified
10 2675902999 Frankia asymbiotica NRRL B-16386 Isolate Nodule
11 2738541280 Massilia sp. GV090 Isolate Unclassified
12 2738541300 Massilia sp. GV016 Isolate Unclassified
13 2738543018 Massilia sp. GV045 Isolate Unclassified
14 2738543030 Massilia sp. GV097 Isolate Unclassified
15 2773857921 Frankia asymbiotica NRRL B-16386 Isolate Nodule
16 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
17 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
18 2842780639 Pseudoxanthomonas sp. R-71986 Isolate Unclassified
19 2842922631 Pararhizobium sp. R-72066 Isolate Unclassified
20 2857531043 Neorhizobium sp. R-72160 Isolate Unclassified
21 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified
22 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
23 2929212328 Mycolicibacterium sp. R-73050 Hybrid assembly Isolate Unclassified
24 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
25 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
26 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
27 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
28 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
29 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
30 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
31 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
32 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
33 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
34 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
35 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
36 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
37 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
38 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
39 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
40 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
41 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
42 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
43 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
44 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
45 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
46 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
47 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
48 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
49 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
50 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
51 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
52 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
53 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
54 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
55 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
56 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
57 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
58 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
59 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
60 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
61 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
63 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
76 3300027357 Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes) (version 2) Metagenome Nodule
77 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
78 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
79 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
80 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
81 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
82 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
83 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
84 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
85 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
86 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
87 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
88 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
89 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
90 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
91 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
92 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
93 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
94 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
95 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
96 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
97 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
98 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
99 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
100 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
101 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
102 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
103 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
104 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
105 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
106 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
107 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
108 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
109 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
110 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
111 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
112 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
113 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
114 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
115 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
116 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
117 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
118 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
119 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
120 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
121 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
122 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
123 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
124 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
125 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
126 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
127 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
128 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
129 643348564 Methylobacterium nodulans ORS 2060 Isolate Nodule
130 8002784119 Frankia sp. AgB1.9 Isolate Nodule
131 8006984368 Bradyrhizobium sp. SRL28 Isolate Unclassified
132 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
133 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
134 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
135 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
136 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 77.42
Metatranscriptomes 0
Isolates 22.58

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 16.77
Nodule 5.16
Rhizoplane 1.94
Rhizosphere 57.42
Stem 0
Stem Tuber 0
Unclassified 18.71

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24735J21928_10000258 3300002067 Bacteria 18483
2 JGI25406J46586_10000402 3300003203 Bacteria 19922
3 JGI25406J46586_10009631 3300003203 Bacteria 4321
4 JGI25153J46596_10000172 3300003215 Bacteria 64551
5 rootL2_10215513 3300003322 Bacteria 3305
6 Ga0055540_1002671 3300003792 Bacteria 9200
7 Ga0055531_10003833 3300003794 Bacteria 9417
8 Ga0070658_10000081 3300005327 Bacteria 90275
9 Ga0070668_100013211 3300005347 Bacteria 6159
10 Ga0070714_100160324 3300005435 Bacteria 2035
11 Ga0070663_100000854 3300005455 Bacteria 16514
12 Ga0068853_100005028 3300005539 Bacteria 10310
13 Ga0068855_100000313 3300005563 Bacteria 60285
14 Ga0068855_100001373 3300005563 Bacteria 30117
15 Ga0068854_100000332 3300005578 Bacteria 30937
16 Ga0068852_100000112 3300005616 Bacteria 54817
17 Ga0068859_100000688 3300005617 Bacteria 33895
18 Ga0068863_100013499 3300005841 Bacteria 7880
19 Ga0081539_10000146 3300005985 Bacteria 164571
20 Ga0081539_10003329 3300005985 Bacteria 20019
21 Ga0075368_10021950 3300006042 Bacteria 2428
22 Ga0075364_10002408 3300006051 Bacteria 10494
23 Ga0075367_10000674 3300006178 Bacteria 13110
24 Ga0075369_10004158 3300006186 Bacteria 5327
25 Ga0075370_10036065 3300006353 Bacteria 2776
26 Ga0097620_100000688 3300006931 Bacteria 33895
27 Ga0099824_1011987 3300006942 Bacteria 9603
28 Ga0105240_10000156 3300009093 Bacteria 139950
29 Ga0105240_10003426 3300009093 Bacteria 24643
30 Ga0105240_10048288 3300009093 Bacteria 5381
31 Ga0105247_10006351 3300009101 Bacteria 7319
32 Ga0105248_10251282 3300009177 Bacteria 1990
33 Ga0105237_10000325 3300009545 Bacteria 67280
34 Ga0105238_10021700 3300009551 Bacteria 6542
35 Ga0105239_10000118 3300010375 Bacteria 112168
36 Ga0105239_10001578 3300010375 Bacteria 30110
37 Ga0105239_10004508 3300010375 Bacteria 16613
38 Ga0105239_10137707 3300010375 Bacteria 2718
39 Ga0105246_10029561 3300011119 Bacteria 3610
40 Ga0163163_10040427 3300014325 Bacteria 4553
41 Ga0163163_10150642 3300014325 Bacteria 2370
42 Ga0209758_1000007 3300025297 Bacteria 1270410
43 Ga0209050_1005989 3300025298 Bacteria 7378
44 Ga0209050_1007210 3300025298 Bacteria 6312
45 Ga0207426_1016869 3300025302 Bacteria 2607
46 Ga0209051_1003865 3300025303 Bacteria 9573
47 Ga0209257_1000270 3300025304 Bacteria 119394
48 Ga0209257_1004876 3300025304 Bacteria 9909
49 Ga0207705_10000193 3300025909 Bacteria 61961
50 Ga0207695_10000250 3300025913 Bacteria 139984
51 Ga0207695_10007009 3300025913 Bacteria 14458
52 Ga0207695_10035756 3300025913 Bacteria 5381
53 Ga0207671_10000100 3300025914 Bacteria 131821
54 Ga0207667_10000006 3300025949 Bacteria 679876
55 Ga0207667_10000091 3300025949 Bacteria 148651
56 Ga0207667_10001403 3300025949 Bacteria 30213
57 Ga0207668_10012353 3300025972 Bacteria 5225
58 Ga0207640_10000712 3300025981 Bacteria 19287
59 Ga0207639_10000038 3300026041 Bacteria 145316
60 Ga0207678_10000696 3300026067 Bacteria 30669
61 Ga0207678_10012645 3300026067 Bacteria 7415
62 Ga0207641_10018594 3300026088 Bacteria 5697
63 Ga0207698_10000507 3300026142 Bacteria 22643
64 Ga0209389_1000024 3300027296 Bacteria 150002
65 Ga0209589_1000505 3300027357 Bacteria 55405
66 Ga0209489_100052 3300027361 Bacteria 150002
67 Ga0307515_10086752 3300028794 Bacteria 3985
68 Ga0265338_10000363 3300028800 Bacteria 81934
69 Ga0307512_10062218 3300030522 Bacteria 2866
70 Ga0307513_10015529 3300031456 Bacteria 9229
71 Ga0307508_10024236 3300031616 Bacteria 5506
72 Ga0307516_10006739 3300031730 Bacteria 13428
73 Ga0307518_10000657 3300031838 Bacteria 25969
74 Ga0307510_10070120 3300033180 Bacteria 3504
75 Ga0395905_0010649 3300037471 Bacteria 8921
76 Ga0395901_0001554 3300038443 Bacteria 23792
77 Ga0451853_2523424 3300041512 Bacteria 5920
78 Ga0466969_0015273 3300044656 Bacteria 4025
79 Ga0466966_0007504 3300044684 Bacteria 7222
80 Ga0466961_0000486 3300044693 Bacteria 25277
81 Ga0466959_0007409 3300045049 Bacteria 7698
82 Ga0495603_0000230 3300046455 Bacteria 29131
83 Ga0495638_0002628 3300046460 Bacteria 14460
84 Ga0495638_0005241 3300046460 Bacteria 9684
85 Ga0495584_0000016 3300046491 Bacteria 156560
86 Ga0495594_0000146 3300046499 Bacteria 33823
87 Ga0495607_0021347 3300046501 Bacteria 4075
88 Ga0495583_0000633 3300046506 Bacteria 46837
89 Ga0495606_0008419 3300046507 Bacteria 8970
90 Ga0495606_0025243 3300046507 Bacteria 4260
91 Ga0495597_0008351 3300046542 Bacteria 5188
92 Ga0495622_0000278 3300046557 Bacteria 38987
93 Ga0495633_0044692 3300046558 Bacteria 2099
94 Ga0495625_0002009 3300046660 Bacteria 22930
95 Ga0495625_0006137 3300046660 Bacteria 10764
96 Ga0495659_0000018 3300046664 Bacteria 75257
97 Ga0495657_0008403 3300046675 Bacteria 7902
98 Ga0495613_0048480 3300046689 Bacteria 3136
99 Ga0495671_0000159 3300046692 Bacteria 59318
100 Ga0495660_0011560 3300046810 Bacteria 5120
101 Ga0495672_0002035 3300047320 Bacteria 19028
102 Ga0495687_005778 3300047443 Bacteria 7767
103 Ga0495673_0000225 3300047469 Bacteria 83589
104 Ga0496102_0025893 3300048905 Bacteria 5226
105 Ga0496116_0001037 3300048919 Bacteria 33961
106 Ga0496122_0071107 3300048925 Bacteria 2481
107 Ga0496124_0000052 3300048927 Bacteria 252750
108 Ga0501044_0000340 3300049823 Bacteria 59157
109 nmdc:mga00v17_3325_c1 3300050491 Bacteria 8292
110 nmdc:mga06z11_1748_c1 3300050494 Bacteria 8169
111 nmdc:mga06r32_27166_c1 3300050510 Bacteria 5343
112 nmdc:mga0sz30_17512_c1 3300050516 Bacteria 2858
113 Ga0500566_0001277 3300053094 Bacteria 14669
114 Ga0500556_0000862 3300053104 Bacteria 17159
115 Ga0500595_000258 3300053119 Bacteria 35116
116 Ga0500577_0001432 3300053142 Bacteria 6110
117 Ga0500624_000148 3300053157 Bacteria 29005
118 Ga0500638_001884 3300053162 Bacteria 6967
119 Ga0500637_0000147 3300053178 Bacteria 25930
120 Ga0500661_000057 3300055283 Bacteria 17586

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300014325 Ga0163163_10150642 Ga0163163_101506421 504
2 3300005617 Ga0068859_100000688 Ga0068859_10000068817 505
3 3300006931 Ga0097620_100000688 Ga0097620_10000068820 505
4 3300009101 Ga0105247_10006351 Ga0105247_100063512 505
5 iso_pu_bacteria 2857531043 2857533259 509
6 3300028794 Ga0307515_10086752 Ga0307515_100867522 517
7 3300030522 Ga0307512_10062218 Ga0307512_100622182 517
8 3300031456 Ga0307513_10015529 Ga0307513_1001552910 517
9 3300005435 Ga0070714_100160324 Ga0070714_1001603242 520
10 3300053142 Ga0500577_0001432 Ga0500577_0001432_2633_4204 522
11 3300031730 Ga0307516_10006739 Ga0307516_100067395 524
12 3300033180 Ga0307510_10070120 Ga0307510_100701202 524
13 3300037471 Ga0395905_0010649 Ga0395905_0010649_4893_6608 524
14 3300038443 Ga0395901_0001554 Ga0395901_0001554_7624_9339 524
15 iso_pu_bacteria 2818991472 2819745027 525
16 iso_pu_bacteria 8002784119 8002792554 525
17 3300003322 rootL2_10215513 rootL2_102155132 526
18 3300025304 Ga0209257_1000270 Ga0209257_100027081 526
19 iso_pu_bacteria 2870782633 2870787790 529
20 3300046675 Ga0495657_0008403 Ga0495657_0008403_3585_5228 530
21 3300046689 Ga0495613_0048480 Ga0495613_0048480_978_2621 530
22 3300005455 Ga0070663_100000854 Ga0070663_1000008545 531
23 3300009177 Ga0105248_10251282 Ga0105248_102512822 531
24 3300010375 Ga0105239_10004508 Ga0105239_100045086 531
25 3300011119 Ga0105246_10029561 Ga0105246_100295612 531
26 3300026067 Ga0207678_10000696 Ga0207678_1000069621 531
27 3300048905 Ga0496102_0025893 Ga0496102_0025893_2366_4039 531
28 3300053104 Ga0500556_0000862 Ga0500556_0000862_13025_14698 531
29 3300003203 JGI25406J46586_10000402 JGI25406J46586_1000040215 532
30 3300005985 Ga0081539_10003329 Ga0081539_100033294 532
31 3300009551 Ga0105238_10021700 Ga0105238_100217003 532
32 3300048925 Ga0496122_0071107 Ga0496122_0071107_154_1773 532
33 iso_pu_bacteria 2842780639 2842781787 532
34 3300046501 Ga0495607_0021347 Ga0495607_0021347_1881_3584 533
35 3300046507 Ga0495606_0008419 Ga0495606_0008419_4073_5776 533
36 3300046558 Ga0495633_0044692 Ga0495633_0044692_299_2002 533
37 3300048927 Ga0496124_0000052 Ga0496124_0000052_184541_186166 533
38 3300025302 Ga0207426_1016869 Ga0207426_10168692 536
39 3300044656 Ga0466969_0015273 Ga0466969_0015273_1051_2661 536
40 3300044684 Ga0466966_0007504 Ga0466966_0007504_4272_5882 536
41 3300044693 Ga0466961_0000486 Ga0466961_0000486_20970_22580 536
42 3300045049 Ga0466959_0007409 Ga0466959_0007409_1183_2793 536
43 iso_pu_bacteria 2929212328 2929219172 536
44 3300003203 JGI25406J46586_10009631 JGI25406J46586_100096312 537
45 3300005985 Ga0081539_10000146 Ga0081539_1000014627 537
46 3300006042 Ga0075368_10021950 Ga0075368_100219502 537
47 3300006178 Ga0075367_10000674 Ga0075367_1000067413 537
48 3300028800 Ga0265338_10000363 Ga0265338_1000036353 537
49 3300041512 Ga0451853_2523424 Ga0451853_2523424_572_2215 537
50 3300046455 Ga0495603_0000230 Ga0495603_0000230_19358_21001 537
51 3300046499 Ga0495594_0000146 Ga0495594_0000146_8130_9773 537
52 3300046557 Ga0495622_0000278 Ga0495622_0000278_19358_21001 537
53 3300050494 nmdc:mga06z11_1748_c1 nmdc:mga06z11_1748_c1_1521_3164 537
54 iso_pu_bacteria 2585427649 2586060763 537
55 3300006051 Ga0075364_10002408 Ga0075364_1000240813 538
56 3300006186 Ga0075369_10004158 Ga0075369_100041582 538
57 3300006353 Ga0075370_10036065 Ga0075370_100360652 538
58 3300031838 Ga0307518_10000657 Ga0307518_1000065713 538
59 3300050491 nmdc:mga00v17_3325_c1 nmdc:mga00v17_3325_c1_100_1746 538
60 3300050516 nmdc:mga0sz30_17512_c1 nmdc:mga0sz30_17512_c1_321_1967 538
61 3300053094 Ga0500566_0001277 Ga0500566_0001277_8054_9727 538
62 3300053119 Ga0500595_000258 Ga0500595_000258_14533_16206 538
63 3300053162 Ga0500638_001884 Ga0500638_001884_3191_4864 538
64 3300053178 Ga0500637_0000147 Ga0500637_0000147_9130_10803 538
65 3300055283 Ga0500661_000057 Ga0500661_000057_2327_4000 538
66 iso_pu_bacteria 2917736166 2917743022 538
67 3300046460 Ga0495638_0002628 Ga0495638_0002628_2101_3747 539
68 iso_pu_bacteria 2791355406 2793975850 539
69 iso_pu_bacteria 2997600082 2997602735 539
70 iso_pu_bacteria 8047893842 8047893994 539
71 iso_pu_bacteria 8048127548 8048135139 539
72 iso_pu_bacteria 8048356638 8048365012 539
73 iso_pu_bacteria 8048369669 8048371012 539
74 iso_pu_bacteria 8048379754 8048379812 539
75 iso_pu_bacteria 2675902999 2676204647 540
76 iso_pu_bacteria 2773857921 2774849222 540
77 3300005347 Ga0070668_100013211 Ga0070668_1000132115 541
78 3300025972 Ga0207668_10012353 Ga0207668_100123532 541
79 iso_pu_bacteria 2582581313 2585307763 541
80 iso_pu_bacteria 2643221647 2644270073 541
81 iso_pu_bacteria 2954380949 2954381778 541
82 iso_pu_bacteria 2954691527 2954692238 541
83 iso_pu_bacteria 2954701450 2954707307 541
84 3300006942 Ga0099824_1011987 Ga0099824_10119873 542
85 3300027296 Ga0209389_1000024 Ga0209389_100002427 542
86 3300027357 Ga0209589_1000505 Ga0209589_100050527 542
87 3300027361 Ga0209489_100052 Ga0209489_10005227 542
88 3300031616 Ga0307508_10024236 Ga0307508_100242362 542
89 3300025298 Ga0209050_1005989 Ga0209050_10059896 543
90 iso_pu_bacteria 2599185292 2599903766 543
91 iso_pu_bacteria 2643221569 2643860273 543
92 3300048919 Ga0496116_0001037 Ga0496116_0001037_4153_5802 544
93 iso_pu_bacteria 2582581280 2585154280 545
94 iso_pu_bacteria 2582581293 2585197258 545
95 3300010375 Ga0105239_10137707 Ga0105239_101377072 546
96 3300046491 Ga0495584_0000016 Ga0495584_0000016_93096_94763 546
97 3300046506 Ga0495583_0000633 Ga0495583_0000633_23718_25385 546
98 3300046507 Ga0495606_0025243 Ga0495606_0025243_1848_3515 546
99 3300046542 Ga0495597_0008351 Ga0495597_0008351_1288_2955 546
100 3300046660 Ga0495625_0006137 Ga0495625_0006137_8527_10194 546
101 3300046664 Ga0495659_0000018 Ga0495659_0000018_6144_7811 546
102 3300046692 Ga0495671_0000159 Ga0495671_0000159_51475_53142 546
103 3300046810 Ga0495660_0011560 Ga0495660_0011560_1282_2949 546
104 3300047320 Ga0495672_0002035 Ga0495672_0002035_11451_13118 546
105 3300047443 Ga0495687_005778 Ga0495687_005778_2752_4419 546
106 iso_pu_bacteria 2582581314 2585321023 546
107 iso_pu_bacteria 2738541280 2738741355 546
108 iso_pu_bacteria 2738541300 2738845784 546
109 iso_pu_bacteria 2738543018 2739277589 546
110 iso_pu_bacteria 2738543030 2739346488 546
111 iso_pu_bacteria 2842922631 2842926560 546
112 3300003215 JGI25153J46596_10000172 JGI25153J46596_1000017246 547
113 3300005327 Ga0070658_10000081 Ga0070658_1000008158 547
114 3300005539 Ga0068853_100005028 Ga0068853_1000050283 547
115 3300005563 Ga0068855_100000313 Ga0068855_10000031351 547
116 3300005578 Ga0068854_100000332 Ga0068854_10000033220 547
117 3300005616 Ga0068852_100000112 Ga0068852_10000011229 547
118 3300005841 Ga0068863_100013499 Ga0068863_1000134992 547
119 3300009093 Ga0105240_10000156 Ga0105240_1000015670 547
120 3300009093 Ga0105240_10003426 Ga0105240_100034265 547
121 3300009545 Ga0105237_10000325 Ga0105237_1000032531 547
122 3300010375 Ga0105239_10000118 Ga0105239_1000011890 547
123 3300014325 Ga0163163_10040427 Ga0163163_100404272 547
124 3300025297 Ga0209758_1000007 Ga0209758_100000719 547
125 3300025909 Ga0207705_10000193 Ga0207705_100001933 547
126 3300025913 Ga0207695_10000250 Ga0207695_1000025068 547
127 3300025913 Ga0207695_10007009 Ga0207695_100070097 547
128 3300025914 Ga0207671_10000100 Ga0207671_1000010091 547
129 3300025949 Ga0207667_10000006 Ga0207667_10000006353 547
130 3300025949 Ga0207667_10000091 Ga0207667_1000009146 547
131 3300025981 Ga0207640_10000712 Ga0207640_100007122 547
132 3300026041 Ga0207639_10000038 Ga0207639_10000038107 547
133 3300026067 Ga0207678_10012645 Ga0207678_100126453 547
134 3300026088 Ga0207641_10018594 Ga0207641_100185942 547
135 3300026142 Ga0207698_10000507 Ga0207698_100005072 547
136 3300047469 Ga0495673_0000225 Ga0495673_0000225_35589_37250 547
137 3300050510 nmdc:mga06r32_27166_c1 nmdc:mga06r32_27166_c1_493_2283 547
138 3300003792 Ga0055540_1002671 Ga0055540_10026714 548
139 3300003794 Ga0055531_10003833 Ga0055531_100038335 548
140 3300025298 Ga0209050_1007210 Ga0209050_10072102 548
141 3300025303 Ga0209051_1003865 Ga0209051_10038655 548
142 3300025304 Ga0209257_1004876 Ga0209257_10048766 548
143 3300046460 Ga0495638_0005241 Ga0495638_0005241_4217_5896 548
144 3300046660 Ga0495625_0002009 Ga0495625_0002009_16370_18049 548
145 3300002067 JGI24735J21928_10000258 JGI24735J21928_100002582 549
146 3300005563 Ga0068855_100001373 Ga0068855_1000013736 549
147 3300009093 Ga0105240_10048288 Ga0105240_100482884 549
148 3300010375 Ga0105239_10001578 Ga0105239_100015786 549
149 3300025913 Ga0207695_10035756 Ga0207695_100357564 549
150 3300025949 Ga0207667_10001403 Ga0207667_100014036 549
151 3300049823 Ga0501044_0000340 Ga0501044_0000340_2770_4461 549
152 3300053157 Ga0500624_000148 Ga0500624_000148_5349_7016 549
153 iso_pu_bacteria 2643221645 2644252571 549
154 iso_pu_bacteria 643348564 643601644 549
155 iso_pu_bacteria 8006984368 8006984752 549

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13193

AMP-binding_C

AMP-binding enzyme C-terminal domain

499

577

0.95

PF00501

AMP-binding

AMP-binding enzyme

73

447

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
4u5y-assembly1.cif.gz_D crystal structure of the complex between the gnat domain of s. lividans pat and the acetyl-coa synthetase c-terminal domain of s. enterica 0.9447 447 535
5bus-assembly1.cif.gz_B o-succinylbenzoate coenzyme a synthetase (mene) from bacillus subtilis, in complex with amp 0.8864 24 438
7knp-assembly1.cif.gz_C crystal structure of acetyl-coa synthetase in complex with adenosine-5'-butylphosphate from cryptococcus neoformans var. grubii serotype a (h99) 0.8852 16 432
7kdn-assembly3.cif.gz_C crystal structure of acetyl-coa synthetase in complex with adenosine-5'-propylphosphate from aspergillus fumigatus 0.8848 6 434
5oe4-assembly2.cif.gz_B crystal structure of the n-terminal domain of pqsa in complex with anthraniloyl-amp (crystal form 2) 0.8845 22 435
ID Description Score Start End Superfamily
af_A0A0R0JS26_74_160_3.40.50.980 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9493 52 134 3.40.50.980
af_C6KTB4_49_280_3.40.50.980 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9275 20 128 3.40.50.980
af_Q2FV14_2_418_3.40.50.12780 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;ANL, N-terminal domain 0.9251 12 436 3.40.50.12780
af_Q9QXG4_30_569_3.40.50.12780 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;ANL, N-terminal domain 0.9231 21 436 3.40.50.12780
af_Q2FV14_2_418_3.40.50.12780 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;ANL, N-terminal domain 0.9209 12 436 3.40.50.12780
ID Description Score Start End GO Terms
AF-W4V599-F1-model_v4 Long-chain-fatty-acid-CoA ligase 0.9769 47 134 GO:0016874
AF-A0A7C5KDF3-F1-model_v4 Acetyl-coenzyme A synthetase (EC 6.2.1.1) 0.9714 46 127 GO:0003987
GO:0005829
GO:0006085
AF-A0A1A9ZDT2-F1-model_v4 AMP-dependent synthetase/ligase domain-containing protein 0.9582 48 134 GO:0005777
GO:0016020
GO:0016405
AF-A0A482RQG2-F1-model_v4 deleted 0.9567 21 127
AF-A0A3N5MIS2-F1-model_v4 Acetyl-coenzyme A synthetase 0.9221 21 312 GO:0003987
GO:0005829
GO:0006085

Feature Viewer

pLDDT pTM Quality
88.74 0.8 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map