F222882

General Info

Members Datasets Scaffolds Average Seq Length
155 131 128 191

Family's Representative Sequence

Representative Sequence 3300044656|Ga0466969_0011955|Ga0466969_0011955_3811_4449
Length 212
Sequence VKVHSFPSPTSKDASQMTRVIAGAARGRRLAVPSGNGTRPTSDRAREALFSSWEALRGSLAGARVMDLYAGSGAVGLEALSRGAAHTLLVEEDPAAVKVILANVRTLSLPGAEVRSGKAERVIAGAPPSTPYDLVFLDPPYAVTDGELREILVTLSSQGWLDEDVIVTVERSTRGGAFTWPEGFEGLRERRYGEATLWYGRAADGAGKGAGL

Samples

Sample ID Description Type Environment
1 2527291627 Frankia casuarinae Thr Isolate Nodule
2 2527291629 Frankia sp. BMG5.23 Isolate Nodule
3 2546825537 Frankia sp. CcI6 Isolate Rhizoplane
4 2547132424 Nocardia nova SH22a Isolate Unclassified
5 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
6 2558860112 Pseudonocardia acaciae DSM 45401 Isolate Unclassified
7 2576861822 Frankia sp. CeD Isolate Nodule
8 2684623036 Frankia sp. CgIM4 Isolate Nodule
9 2710264753 Frankia sp. KB5 Isolate Nodule
10 2773857924 Frankia sp. CgIS1 Isolate Nodule
11 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
12 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
13 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified
14 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
15 2873314349 Sphaerisporangium siamense DSM 45784 Isolate Rhizosphere
16 2891554331 Microbispora sp. CL1-1 Isolate Unclassified
17 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
18 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
19 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere
20 2995463766 Streptacidiphilus fuscans NEAU-YB345 Isolate Unclassified
21 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
22 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
23 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
24 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
25 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
26 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
27 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
28 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
29 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
30 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
31 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
32 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
33 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
34 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
35 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
36 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
37 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
38 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
39 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
40 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
41 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
42 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
43 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
44 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
45 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
46 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
60 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
61 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
62 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
63 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
64 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
65 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
66 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
67 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
68 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
69 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
70 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
71 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
72 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
73 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
74 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
75 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
76 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
77 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
78 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
79 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
80 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
81 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
82 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
83 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
84 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
85 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
86 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
87 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
88 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
89 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
90 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
91 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
92 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
93 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
94 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
95 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
96 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
97 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
98 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
99 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
100 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
101 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
102 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
103 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
104 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
105 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
106 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
107 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
108 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
109 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
110 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
111 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
112 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
113 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
114 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
115 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
116 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
119 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
120 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
121 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
122 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
123 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
124 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
125 637000116 Frankia casuarinae CcI3 Isolate Nodule
126 8002784119 Frankia sp. AgB1.9 Isolate Nodule
127 8008485437 Streptomyces mimosae 3MP-10 Isolate Unclassified
128 8025524527 Streptomyces sp. 3MP-14 Isolate Unclassified
129 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
130 8054472261 Pseudonocardia terrae RS11V-5 Isolate Rhizosphere
131 8056060235 Nocardiopsis endophytica RSe5-2 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 82.58
Metatranscriptomes 0
Isolates 17.42

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.94
Nodule 5.16
Rhizoplane 2.58
Rhizosphere 78.06
Stem 0
Stem Tuber 0
Unclassified 12.26

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10008239 3300003316 Bacteria 4152
2 rootH2_10002353 3300003320 Bacteria 4858
3 rootL2_10009668 3300003322 Bacteria 4140
4 Ga0070658_10447374 3300005327 Bacteria 1113
5 Ga0070683_100336580 3300005329 Bacteria 1437
6 Ga0068869_100115400 3300005334 Bacteria 2048
7 Ga0070682_100045626 3300005337 Bacteria 2717
8 Ga0070689_100590959 3300005340 Bacteria 961
9 Ga0070714_100164947 3300005435 Bacteria 2007
10 Ga0070713_100092052 3300005436 Bacteria 2610
11 Ga0070684_100259805 3300005535 Bacteria 1589
12 Ga0070672_100523067 3300005543 Bacteria 1028
13 Ga0070686_100522380 3300005544 Bacteria 924
14 Ga0070665_100382014 3300005548 Bacteria 1416
15 Ga0068854_100086248 3300005578 Bacteria 2327
16 Ga0068859_100002002 3300005617 Bacteria 20795
17 Ga0068864_100113721 3300005618 Bacteria 2413
18 Ga0081455_10135694 3300005937 Bacteria 1918
19 Ga0075365_10528057 3300006038 Bacteria 834
20 Ga0105245_10088463 3300009098 Bacteria 2845
21 Ga0105245_10292679 3300009098 Bacteria 1595
22 Ga0105243_10565453 3300009148 Bacteria 1089
23 Ga0105249_11581823 3300009553 Bacteria 728
24 Ga0105239_10620986 3300010375 Bacteria 1233
25 Ga0163163_11068352 3300014325 Bacteria 870
26 Ga0213875_10105954 3300021388 Bacteria 1313
27 Ga0207642_10070119 3300025899 Bacteria 1665
28 Ga0207688_10064983 3300025901 Bacteria 2061
29 Ga0207643_10024468 3300025908 Bacteria 3333
30 Ga0207664_10072560 3300025929 Bacteria 2775
31 Ga0207709_10416329 3300025935 Bacteria 1031
32 Ga0207691_10301803 3300025940 Bacteria 1376
33 Ga0207668_10361271 3300025972 Bacteria 1217
34 Ga0207640_10465164 3300025981 Bacteria 1045
35 Ga0207676_10227624 3300026095 Bacteria 1665
36 Ga0207674_10185762 3300026116 Bacteria 2029
37 Ga0207683_10065040 3300026121 Bacteria 3215
38 Ga0207698_10168931 3300026142 Bacteria 1923
39 Ga0268266_10883860 3300028379 Bacteria 864
40 Ga0316183_1111969 3300030742 Bacteria 1834
41 Ga0316181_1086136 3300030744 Bacteria 2320
42 Ga0316182_1231380 3300030745 Bacteria 9507
43 Ga0307513_10375300 3300031456 Bacteria 1163
44 Ga0307513_10431002 3300031456 Bacteria 1047
45 Ga0307514_10025477 3300031649 Bacteria 4783
46 Ga0307516_10007570 3300031730 Bacteria 12451
47 Ga0307413_10202802 3300031824 Bacteria 1434
48 Ga0307413_10364042 3300031824 Bacteria 1121
49 Ga0307411_10978240 3300032005 Bacteria 756
50 Ga0307510_10006807 3300033180 Bacteria 13634
51 Ga0436364_0971662 3300037853 Bacteria 2163
52 Ga0439440_0042168 3300042993 Bacteria 1116
53 Ga0466969_0007554 3300044656 Bacteria 5777
54 Ga0466969_0011955 3300044656 Bacteria 4590
55 Ga0466966_0008554 3300044684 Bacteria 6774
56 Ga0466966_0035320 3300044684 Bacteria 3229
57 Ga0466966_0141032 3300044684 Bacteria 1473
58 Ga0466961_0030236 3300044693 Bacteria 3480
59 Ga0466961_0175164 3300044693 Bacteria 1333
60 Ga0466961_0330318 3300044693 Bacteria 929
61 Ga0466964_0038550 3300044706 Bacteria 1922
62 Ga0466971_0002719 3300044719 Bacteria 7477
63 Ga0466970_0010464 3300044765 Bacteria 4709
64 Ga0466970_0187061 3300044765 Bacteria 1150
65 Ga0466957_0133171 3300044842 Bacteria 1595
66 Ga0466959_0004517 3300045049 Bacteria 9332
67 Ga0466959_0075323 3300045049 Bacteria 2438
68 Ga0466967_0100864 3300045976 Bacteria 2638
69 Ga0466967_0125181 3300045976 Bacteria 2380
70 Ga0495592_0114781 3300046454 Bacteria 1901
71 Ga0495629_0239299 3300046459 Bacteria 1250
72 Ga0495651_0147753 3300046462 Bacteria 1697
73 Ga0495580_0249799 3300046472 Bacteria 1215
74 Ga0495662_0001444 3300046476 Bacteria 11755
75 Ga0495664_0035508 3300046477 Bacteria 2936
76 Ga0495585_0022594 3300046492 Bacteria 3611
77 Ga0495594_0023362 3300046499 Bacteria 3312
78 Ga0495608_0004752 3300046511 Bacteria 9724
79 Ga0495628_0033134 3300046516 Bacteria 4165
80 Ga0495630_0067606 3300046517 Bacteria 2686
81 Ga0495648_0049781 3300046524 Bacteria 2565
82 Ga0495666_0002654 3300046526 Bacteria 8914
83 Ga0495652_0016708 3300046529 Bacteria 6559
84 Ga0495665_0006543 3300046531 Bacteria 6293
85 Ga0495640_0024930 3300046533 Bacteria 4346
86 Ga0495640_0064036 3300046533 Bacteria 2487
87 Ga0495586_0020499 3300046535 Bacteria 3520
88 Ga0495587_0049452 3300046536 Bacteria 2488
89 Ga0495645_0024760 3300046543 Bacteria 4355
90 Ga0495645_0057122 3300046543 Bacteria 2833
91 Ga0495667_0008717 3300046559 Bacteria 6887
92 Ga0495667_0396215 3300046559 Bacteria 870
93 Ga0495634_0072645 3300046642 Bacteria 2262
94 Ga0495635_0153140 3300046663 Bacteria 1569
95 Ga0495599_0005135 3300046678 Bacteria 7799
96 Ga0495623_0042091 3300046679 Bacteria 2910
97 Ga0495623_0409763 3300046679 Bacteria 728
98 Ga0495646_0011282 3300046680 Bacteria 5674
99 Ga0495613_0083907 3300046689 Bacteria 2314
100 Ga0495600_0003746 3300046809 Bacteria 8992
101 Ga0495581_0071609 3300047315 Bacteria 2006
102 Ga0495581_0276398 3300047315 Bacteria 982
103 Ga0495604_0001635 3300047317 Bacteria 18454
104 Ga0495604_0004121 3300047317 Bacteria 11547
105 Ga0495604_0027680 3300047317 Bacteria 4507
106 Ga0495674_0046811 3300047319 Bacteria 3838
107 Ga0495675_0006726 3300047444 Bacteria 7047
108 Ga0495675_0045955 3300047444 Bacteria 2780
109 Ga0495684_0050782 3300047471 Bacteria 3165
110 Ga0495593_0003723 3300047673 Bacteria 9100
111 Ga0495602_0127134 3300048088 Bacteria 2039
112 Ga0496102_0143787 3300048905 Bacteria 2237
113 Ga0496108_0000048 3300048911 Bacteria 133539
114 Ga0496110_0976249 3300048913 Bacteria 754
115 Ga0501031_0016072 3300049568 Bacteria 4860
116 Ga0501047_0000029 3300049581 Bacteria 218396
117 Ga0501047_0051373 3300049581 Bacteria 3983
118 Ga0501047_0235538 3300049581 Bacteria 1683
119 Ga0501047_0446029 3300049581 Bacteria 1124
120 Ga0501047_0506855 3300049581 Bacteria 1033
121 Ga0501044_0226458 3300049823 Bacteria 1819
122 nmdc:mga03n38_212810_c1 3300050490 Bacteria 1005
123 nmdc:mga0yw44_502997_c1 3300050492 Bacteria 822
124 nmdc:mga0qj67_273913_c1 3300050509 Bacteria 1368
125 Ga0495601_0008138 3300053077 Bacteria 6185
126 Ga0495619_0342045 3300053085 Bacteria 1035
127 Ga0466962_0008492 3300061719 Bacteria 4921
128 Ga0466962_0101615 3300061719 Bacteria 1381

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044684 Ga0466966_0141032 Ga0466966_0141032_728_1216 149
2 3300044693 Ga0466961_0330318 Ga0466961_0330318_29_517 149
3 3300025940 Ga0207691_10301803 Ga0207691_103018032 172
4 3300030742 Ga0316183_1111969 Ga0316183_11119693 176
5 3300030744 Ga0316181_1086136 Ga0316181_10861362 176
6 3300030745 Ga0316182_1231380 Ga0316182_12313803 176
7 3300005340 Ga0070689_100590959 Ga0070689_1005909592 177
8 3300005543 Ga0070672_100523067 Ga0070672_1005230672 177
9 3300005548 Ga0070665_100382014 Ga0070665_1003820142 177
10 3300005578 Ga0068854_100086248 Ga0068854_1000862482 177
11 3300009148 Ga0105243_10565453 Ga0105243_105654531 177
12 3300025908 Ga0207643_10024468 Ga0207643_100244682 177
13 3300025981 Ga0207640_10465164 Ga0207640_104651642 177
14 3300026095 Ga0207676_10227624 Ga0207676_102276242 177
15 3300026116 Ga0207674_10185762 Ga0207674_101857622 177
16 3300028379 Ga0268266_10883860 Ga0268266_108838602 177
17 3300044706 Ga0466964_0038550 Ga0466964_0038550_259_831 177
18 3300044765 Ga0466970_0010464 Ga0466970_0010464_2999_3571 177
19 3300061719 Ga0466962_0101615 Ga0466962_0101615_419_991 177
20 3300005535 Ga0070684_100259805 Ga0070684_1002598052 178
21 iso_pu_bacteria 2870782633 2870784844 179
22 iso_pu_bacteria 2527291627 2528202946 181
23 iso_pu_bacteria 2527291629 2528213377 181
24 iso_pu_bacteria 2546825537 2546947816 181
25 iso_pu_bacteria 2547132424 2548697911 181
26 iso_pu_bacteria 2576861822 2579749569 181
27 iso_pu_bacteria 2684623036 2686542627 181
28 iso_pu_bacteria 2710264753 2710602366 181
29 iso_pu_bacteria 2773857924 2774864569 181
30 iso_pu_bacteria 637000116 637880927 181
31 iso_pu_bacteria 8002784119 8002790667 181
32 3300005618 Ga0068864_100113721 Ga0068864_1001137213 183
33 3300025901 Ga0207688_10064983 Ga0207688_100649833 183
34 3300026121 Ga0207683_10065040 Ga0207683_100650402 183
35 3300031824 Ga0307413_10364042 Ga0307413_103640422 184
36 iso_pu_bacteria 2558860112 2558910863 184
37 3300005327 Ga0070658_10447374 Ga0070658_104473742 185
38 3300005337 Ga0070682_100045626 Ga0070682_1000456263 185
39 3300005436 Ga0070713_100092052 Ga0070713_1000920524 185
40 3300005617 Ga0068859_100002002 Ga0068859_10000200213 185
41 3300009098 Ga0105245_10088463 Ga0105245_100884632 185
42 3300009553 Ga0105249_11581823 Ga0105249_115818232 185
43 3300025899 Ga0207642_10070119 Ga0207642_100701192 185
44 3300025935 Ga0207709_10416329 Ga0207709_104163292 185
45 3300025972 Ga0207668_10361271 Ga0207668_103612712 185
46 3300026142 Ga0207698_10168931 Ga0207698_101689312 185
47 3300031456 Ga0307513_10375300 Ga0307513_103753001 185
48 3300031456 Ga0307513_10431002 Ga0307513_104310022 185
49 3300046524 Ga0495648_0049781 Ga0495648_0049781_669_1226 185
50 3300048905 Ga0496102_0143787 Ga0496102_0143787_939_1496 185
51 3300048911 Ga0496108_0000048 Ga0496108_0000048_94450_95013 185
52 iso_pu_bacteria 2873314349 2873317272 185
53 iso_pu_bacteria 2891554331 2891559579 185
54 3300005937 Ga0081455_10135694 Ga0081455_101356942 186
55 iso_pu_bacteria 8054472261 8054474335 186
56 3300005544 Ga0070686_100522380 Ga0070686_1005223801 187
57 iso_pu_bacteria 2935390628 2935392095 187
58 iso_pu_bacteria 2995463766 2995466986 187
59 3300044765 Ga0466970_0187061 Ga0466970_0187061_209_775 188
60 3300049581 Ga0501047_0051373 Ga0501047_0051373_119_685 188
61 3300049581 Ga0501047_0446029 Ga0501047_0446029_312_878 188
62 3300049581 Ga0501047_0506855 Ga0501047_0506855_100_666 188
63 iso_pu_bacteria 2912757875 2912762998 188
64 3300005329 Ga0070683_100336580 Ga0070683_1003365802 189
65 iso_pu_bacteria 2554235005 2554256054 189
66 iso_pu_bacteria 2808606982 2811844169 189
67 iso_pu_bacteria 2818991463 2819698985 189
68 iso_pu_bacteria 2873151551 2873153859 189
69 iso_pu_bacteria 2918501144 2918506718 189
70 iso_pu_bacteria 8008485437 8008487195 189
71 iso_pu_bacteria 8025524527 8025526372 189
72 iso_pu_bacteria 8053945823 8053946729 189
73 iso_pu_bacteria 8056060235 8056064877 189
74 3300005334 Ga0068869_100115400 Ga0068869_1001154002 190
75 3300006038 Ga0075365_10528057 Ga0075365_105280571 190
76 3300021388 Ga0213875_10105954 Ga0213875_101059542 190
77 3300037853 Ga0436364_0971662 Ga0436364_0971662_829_1401 190
78 3300045976 Ga0466967_0100864 Ga0466967_0100864_476_1078 190
79 3300048913 Ga0496110_0976249 Ga0496110_0976249_16_633 190
80 3300050492 nmdc:mga0yw44_502997_c1 nmdc:mga0yw44_502997_c1_144_725 190
81 3300050509 nmdc:mga0qj67_273913_c1 nmdc:mga0qj67_273913_c1_483_1073 190
82 3300045976 Ga0466967_0125181 Ga0466967_0125181_1653_2258 191
83 3300046499 Ga0495594_0023362 Ga0495594_0023362_2552_3130 191
84 3300046459 Ga0495629_0239299 Ga0495629_0239299_317_898 192
85 3300046492 Ga0495585_0022594 Ga0495585_0022594_15_596 192
86 3300046533 Ga0495640_0024930 Ga0495640_0024930_1150_1731 192
87 3300047315 Ga0495581_0276398 Ga0495581_0276398_376_957 192
88 3300047317 Ga0495604_0027680 Ga0495604_0027680_2596_3177 192
89 3300049568 Ga0501031_0016072 Ga0501031_0016072_1663_2244 192
90 3300049581 Ga0501047_0000029 Ga0501047_0000029_41171_41752 192
91 3300049581 Ga0501047_0235538 Ga0501047_0235538_463_1044 192
92 3300049823 Ga0501044_0226458 Ga0501044_0226458_482_1063 192
93 3300005435 Ga0070714_100164947 Ga0070714_1001649472 193
94 3300025929 Ga0207664_10072560 Ga0207664_100725602 193
95 3300031824 Ga0307413_10202802 Ga0307413_102028021 193
96 3300032005 Ga0307411_10978240 Ga0307411_109782402 193
97 3300046454 Ga0495592_0114781 Ga0495592_0114781_456_1040 193
98 3300046462 Ga0495651_0147753 Ga0495651_0147753_1042_1626 193
99 3300046472 Ga0495580_0249799 Ga0495580_0249799_472_1056 193
100 3300046476 Ga0495662_0001444 Ga0495662_0001444_448_1032 193
101 3300046477 Ga0495664_0035508 Ga0495664_0035508_1916_2500 193
102 3300046511 Ga0495608_0004752 Ga0495608_0004752_8690_9274 193
103 3300046516 Ga0495628_0033134 Ga0495628_0033134_2707_3291 193
104 3300046517 Ga0495630_0067606 Ga0495630_0067606_1264_1848 193
105 3300046526 Ga0495666_0002654 Ga0495666_0002654_6415_6999 193
106 3300046529 Ga0495652_0016708 Ga0495652_0016708_3141_3725 193
107 3300046531 Ga0495665_0006543 Ga0495665_0006543_178_762 193
108 3300046533 Ga0495640_0064036 Ga0495640_0064036_862_1446 193
109 3300046535 Ga0495586_0020499 Ga0495586_0020499_118_702 193
110 3300046536 Ga0495587_0049452 Ga0495587_0049452_914_1498 193
111 3300046543 Ga0495645_0024760 Ga0495645_0024760_1317_1901 193
112 3300046543 Ga0495645_0057122 Ga0495645_0057122_445_1029 193
113 3300046559 Ga0495667_0008717 Ga0495667_0008717_5076_5660 193
114 3300046559 Ga0495667_0396215 Ga0495667_0396215_273_857 193
115 3300046642 Ga0495634_0072645 Ga0495634_0072645_222_806 193
116 3300046663 Ga0495635_0153140 Ga0495635_0153140_914_1498 193
117 3300046678 Ga0495599_0005135 Ga0495599_0005135_839_1423 193
118 3300046679 Ga0495623_0042091 Ga0495623_0042091_72_656 193
119 3300046679 Ga0495623_0409763 Ga0495623_0409763_64_648 193
120 3300046680 Ga0495646_0011282 Ga0495646_0011282_2707_3291 193
121 3300046689 Ga0495613_0083907 Ga0495613_0083907_1264_1848 193
122 3300046809 Ga0495600_0003746 Ga0495600_0003746_179_763 193
123 3300047315 Ga0495581_0071609 Ga0495581_0071609_1110_1694 193
124 3300047317 Ga0495604_0001635 Ga0495604_0001635_5443_6027 193
125 3300047317 Ga0495604_0004121 Ga0495604_0004121_5838_6422 193
126 3300047319 Ga0495674_0046811 Ga0495674_0046811_2383_2967 193
127 3300047444 Ga0495675_0006726 Ga0495675_0006726_5730_6314 193
128 3300047444 Ga0495675_0045955 Ga0495675_0045955_313_897 193
129 3300047471 Ga0495684_0050782 Ga0495684_0050782_291_875 193
130 3300047673 Ga0495593_0003723 Ga0495593_0003723_8104_8688 193
131 3300048088 Ga0495602_0127134 Ga0495602_0127134_465_1049 193
132 3300050490 nmdc:mga03n38_212810_c1 nmdc:mga03n38_212810_c1_333_917 193
133 3300053077 Ga0495601_0008138 Ga0495601_0008138_991_1575 193
134 3300053085 Ga0495619_0342045 Ga0495619_0342045_130_714 193
135 3300031649 Ga0307514_10025477 Ga0307514_100254772 194
136 3300031730 Ga0307516_10007570 Ga0307516_100075705 194
137 3300033180 Ga0307510_10006807 Ga0307510_100068074 194
138 3300044656 Ga0466969_0007554 Ga0466969_0007554_1255_1851 194
139 3300044656 Ga0466969_0011955 Ga0466969_0011955_3811_4449 194
140 3300044684 Ga0466966_0008554 Ga0466966_0008554_1002_1640 194
141 3300044684 Ga0466966_0035320 Ga0466966_0035320_323_919 194
142 3300044693 Ga0466961_0030236 Ga0466961_0030236_2408_3004 194
143 3300044693 Ga0466961_0175164 Ga0466961_0175164_354_992 194
144 3300044719 Ga0466971_0002719 Ga0466971_0002719_800_1396 194
145 3300044842 Ga0466957_0133171 Ga0466957_0133171_538_1134 194
146 3300045049 Ga0466959_0004517 Ga0466959_0004517_7681_8319 194
147 3300045049 Ga0466959_0075323 Ga0466959_0075323_1312_1908 194
148 3300061719 Ga0466962_0008492 Ga0466962_0008492_510_1106 194
149 3300042993 Ga0439440_0042168 Ga0439440_0042168_264_884 195
150 3300009098 Ga0105245_10292679 Ga0105245_102926793 199
151 3300010375 Ga0105239_10620986 Ga0105239_106209861 199
152 3300014325 Ga0163163_11068352 Ga0163163_110683521 199
153 3300003316 rootH1_10008239 rootH1_100082394 204
154 3300003320 rootH2_10002353 rootH2_100023537 204
155 3300003322 rootL2_10009668 rootL2_100096685 204

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03602

Cons_hypoth95

Conserved hypothetical protein 95

18

201

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
6m1c-assembly1.cif.gz_A crystal structure of rsmd methyltransferase of m. tuberculosis in complex with sinefungin reveals key interactions 0.9508 1 187
3p9n-assembly1.cif.gz_A rv2966c of m. tuberculosis is a rsmd-like methyltransferase 0.9402 1 186
6m1c-assembly1.cif.gz_A crystal structure of rsmd methyltransferase of m. tuberculosis in complex with sinefungin reveals key interactions 0.9359 1 187
3p9n-assembly1.cif.gz_A rv2966c of m. tuberculosis is a rsmd-like methyltransferase 0.9254 1 186
2fpo-assembly1.cif.gz_A putative methyltransferase yhhf from escherichia coli. 0.9143 3 188
ID Description Score Start End Superfamily
6aieC00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9434 1 186 3.40.50.150
af_A0A1D6EFY7_537_616_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9304 44 107 3.40.50.150
6aieC00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9285 1 186 3.40.50.150
2esrB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9012 45 186 3.40.50.150
af_P0ADX9_1_198_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8998 3 194 3.40.50.150
ID Description Score Start End GO Terms
AF-A0A1N7DHT2-F1-model_v4 16S rRNA (Guanine966-N2)-methyltransferase 0.982 2 187 GO:0003676
GO:0008168
GO:0031167
AF-A0A7G7L6V8-F1-model_v4 16S rRNA (Guanine(966)-N(2))-methyltransferase RsmD (EC 2.1.1.171) 0.9722 1 186 GO:0003676
GO:0052913
AF-A0A7Z1ANM6-F1-model_v4 deleted 0.9712 19 108
AF-A0A7V9UAR2-F1-model_v4 16S rRNA (Guanine(966)-N(2))-methyltransferase RsmD (EC 2.1.1.171) 0.9695 1 187 GO:0003676
GO:0052913
AF-A0A653VVA8-F1-model_v4 16S rRNA (Guanine(966)-N(2))-methyltransferase RsmD 0.9652 1 185 GO:0003676
GO:0008168
GO:0031167

Feature Viewer

pLDDT pTM Quality
87.46 0.85 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map