F221513

General Info

Members Datasets Scaffolds Average Seq Length
155 127 119 404

Family's Representative Sequence

Representative Sequence 3300005365|Ga0070688_100040738|Ga0070688_1000407383
Length 438
Sequence LKDTPIVSLLSKIIVKFSEDKESSDLSSHFPARESRLIVIGGGAAGFFCAINAARLTPGLKVILLEKTNKLLSKVKVSGGGRCNVTHALFDITEMSKRYPRGQNFVKKTFHQFFTTDTIKWFEERGVPLKEEKDGRMFPVTDSSQSIINCLMKEANGYGVEIMMNAEVKGIVNSSETKPQKAFSVLLNESRMLTADFICIATGGYPKSSMFQWLANLGHTIAEPVPSLFTFNLPAGQQELPKHPITALMGVSVENAKITHWGLSGPAVLRLSAWRARELKIMNYEFRIHINWMPQFNEQRLKSEFQTFRGSFANKRISNHNFSFLPNRLWQFLLGQSGIKEEIRWADLNSKNENLLITNLVDYALEVKGKTTFKEEFVTAGGINLSEIDANTMMSKKISNLYFAGEVMDVDGITGGFNFQHAWTSGWIAGKAIAEQVA

Samples

Sample ID Description Type Environment
1 2513020052 Flavobacterium sp. CF136 Isolate Rhizosphere
2 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
3 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
4 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
5 2643221716 Flavobacterium sp. Root901 Isolate Unclassified
6 2643221725 Flavobacterium sp. Root935 Isolate Unclassified
7 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
8 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
9 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
10 2739367857 Flavobacterium sp. GV029 Isolate Unclassified
11 2739367858 Flavobacterium sp. GV028 Isolate Unclassified
12 2802428842 Flavobacterium sp. S87F.05.LMB.W.Kidney.N Isolate Unclassified
13 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
14 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
15 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
16 2881359912 Flavobacterium ustbae T13 Isolate Rhizosphere
17 2883068021 Chitinophaga rhizosphaerae T16R-86 Isolate Rhizosphere
18 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
19 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
20 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
21 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
22 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
23 2919509842 Flavobacterium arsenatis 3773 Isolate Unclassified
24 2919683626 Flavobacterium piscis 4129 Isolate Unclassified
25 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
26 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
27 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
28 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
29 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
30 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
31 2965320100 Flavobacterium agri MAH-1 Isolate Rhizosphere
32 2977268062 Flavobacterium sp. SORGH_AS 622 Isolate Unclassified
33 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
34 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
35 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
36 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
37 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
38 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
39 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
40 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
41 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
42 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
43 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
44 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
45 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
46 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
47 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
48 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
49 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
50 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
51 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
52 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
53 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
54 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
55 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
56 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
57 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
58 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
59 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
60 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
61 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
62 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
63 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
64 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
65 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
66 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
67 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
68 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
69 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
70 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
71 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
82 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
83 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
84 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
85 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
86 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
87 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
88 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
89 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
90 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
91 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
92 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
93 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
94 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
95 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
96 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
97 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
98 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
99 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
100 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
101 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
102 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
103 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
104 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
105 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
106 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
107 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
108 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
109 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
110 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
111 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
112 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049654 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_A_0_control Metagenome Rhizosphere
116 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
117 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
118 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
119 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
120 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
121 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
122 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
123 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
124 8054307821 Flavobacterium soyae SCIV07 Isolate Rhizosphere
125 8055419101 Flavobacterium tyrosinilyticum KCTC 42726 Isolate Rhizosphere
126 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere
127 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 76.77
Metatranscriptomes 0
Isolates 23.23

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.52
Nodule 3.87
Rhizoplane 0.65
Rhizosphere 72.9
Stem 0
Stem Tuber 0
Unclassified 18.06

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24751J29686_10001452 3300002459 Bacteria 4957
2 rootH1_10031737 3300003323 Bacteria 12561
3 Ga0065714_10008839 3300005288 Bacteria 3220
4 Ga0065714_10077049 3300005288 Bacteria 2719
5 Ga0065704_10070489 3300005289 Bacteria 22644
6 Ga0065704_10086684 3300005289 Bacteria 3095
7 Ga0065712_10024179 3300005290 Bacteria 1298
8 Ga0065712_10112351 3300005290 Bacteria 1792
9 Ga0065715_10031517 3300005293 Bacteria 1908
10 Ga0065715_10097165 3300005293 Bacteria 3745
11 Ga0070658_10103906 3300005327 Bacteria 2350
12 Ga0068869_100040382 3300005334 Bacteria 3337
13 Ga0070688_100040738 3300005365 Bacteria 2848
14 Ga0070688_100061495 3300005365 Bacteria 2374
15 Ga0070698_100002802 3300005471 Bacteria 19186
16 Ga0070698_100006186 3300005471 Bacteria 13034
17 Ga0070698_100016568 3300005471 Bacteria 7777
18 Ga0068852_100261094 3300005616 Bacteria 1663
19 Ga0068859_100238739 3300005617 Bacteria 1906
20 Ga0068859_100259683 3300005617 Bacteria 1828
21 Ga0068864_100069834 3300005618 Bacteria 3055
22 Ga0068863_100099992 3300005841 Bacteria 2756
23 Ga0075431_100316456 3300006847 Bacteria 1574
24 Ga0097620_100238737 3300006931 Bacteria 1906
25 Ga0099824_1000030 3300006942 Bacteria 83906
26 Ga0079104_1000256 3300006946 Bacteria 71046
27 Ga0099826_10000148 3300006948 Bacteria 30005
28 Ga0105244_10000025 3300009036 Bacteria 217877
29 Ga0105250_10006359 3300009092 Bacteria 5168
30 Ga0105240_10122347 3300009093 Bacteria 3131
31 Ga0111539_10373921 3300009094 Bacteria 1659
32 Ga0105242_10005028 3300009176 Bacteria 10215
33 Ga0105242_10033773 3300009176 Bacteria 4099
34 Ga0105242_10083142 3300009176 Bacteria 2680
35 Ga0105249_10009374 3300009553 Bacteria 8565
36 Ga0105249_10030621 3300009553 Bacteria 4866
37 Ga0157373_10000003 3300013100 Bacteria 454601
38 Ga0157371_10021241 3300013102 Bacteria 4768
39 Ga0157370_10002898 3300013104 Bacteria 20456
40 Ga0157370_10009728 3300013104 Bacteria 10219
41 Ga0157370_10012399 3300013104 Bacteria 8839
42 Ga0157370_10038547 3300013104 Bacteria 4622
43 Ga0157378_10112067 3300013297 Unclassified 2502
44 Ga0163162_10029231 3300013306 Bacteria 5454
45 Ga0163162_10060772 3300013306 Bacteria 3815
46 Ga0157372_10134484 3300013307 Bacteria 2847
47 Ga0157372_10323913 3300013307 Unclassified 1794
48 Ga0157375_10166291 3300013308 Bacteria 2351
49 Ga0157380_10004590 3300014326 Bacteria 9590
50 Ga0157380_10021999 3300014326 Bacteria 4791
51 Ga0157380_10091246 3300014326 Bacteria 2515
52 Ga0157377_10023353 3300014745 Bacteria 3276
53 Ga0163161_10000014 3300017792 Bacteria 258440
54 Ga0163161_10009907 3300017792 Bacteria 6601
55 Ga0213876_10007009 3300021384 Bacteria 6147
56 Ga0209436_104037 3300025208 Bacteria 3709
57 Ga0207426_1000073 3300025302 Bacteria 323756
58 Ga0207655_1000003 3300025728 Bacteria 1081376
59 Ga0207695_10198363 3300025913 Bacteria 1922
60 Ga0207686_10004547 3300025934 Bacteria 7435
61 Ga0207686_10132395 3300025934 Bacteria 1712
62 Ga0207691_10027421 3300025940 Bacteria 5340
63 Ga0207689_10006806 3300025942 Bacteria 10058
64 Ga0207689_10011365 3300025942 Bacteria 7633
65 Ga0207712_10015921 3300025961 Bacteria 4860
66 Ga0207641_10010823 3300026088 Bacteria 7474
67 Ga0207676_10198586 3300026095 Unclassified 1770
68 Ga0207676_10333880 3300026095 Bacteria 1396
69 Ga0207674_10078971 3300026116 Bacteria 3296
70 Ga0207675_100031635 3300026118 Bacteria 4930
71 Ga0209281_1000115 3300027111 Bacteria 210393
72 Ga0209489_107039 3300027361 Bacteria 17300
73 Ga0209282_1008931 3300027666 Bacteria 6333
74 Ga0209974_10009064 3300027876 Bacteria 3383
75 Ga0265327_10000159 3300031251 Bacteria 145537
76 Ga0307408_100000083 3300031548 Bacteria 105013
77 Ga0307408_100014420 3300031548 Bacteria 5249
78 Ga0307405_10000004 3300031731 Bacteria 444977
79 Ga0307413_10000007 3300031824 Bacteria 65102
80 Ga0307406_10016887 3300031901 Bacteria 4247
81 Ga0307416_100001219 3300032002 Bacteria 13877
82 Ga0307414_10014408 3300032004 Bacteria 4740
83 Ga0307414_10017040 3300032004 Bacteria 4436
84 Ga0307414_10077346 3300032004 Bacteria 2421
85 Ga0307411_10000033 3300032005 Bacteria 45514
86 Ga0307510_10021478 3300033180 Bacteria 7523
87 Ga0395905_0002103 3300037471 Bacteria 22627
88 Ga0436365_1482973 3300039437 Bacteria 7938
89 Ga0439447_000094 3300041407 Bacteria 31565
90 Ga0439466_0000154 3300041411 Bacteria 27308
91 Ga0439431_0000180 3300041997 Bacteria 12218
92 Ga0451577_0004040 3300042876 Bacteria 15778
93 Ga0453684_0002642 3300044712 Bacteria 42802
94 Ga0451576_0028681 3300045051 Bacteria 5960
95 Ga0495627_006518 3300046453 Bacteria 4571
96 Ga0495616_0011466 3300046513 Bacteria 5076
97 Ga0495643_0000814 3300046522 Bacteria 34057
98 Ga0495668_0000235 3300046616 Bacteria 78964
99 Ga0495674_0145887 3300047319 Unclassified 1987
100 Ga0496115_0026951 3300048918 Bacteria 4492
101 Ga0496121_0007618 3300048924 Bacteria 13022
102 Ga0496124_0089047 3300048927 Bacteria 2521
103 Ga0496125_0000024 3300048928 Bacteria 442149
104 Ga0496125_0142358 3300048928 Bacteria 1665
105 Ga0496126_0014383 3300048929 Bacteria 8002
106 Ga0501034_0002020 3300049571 Bacteria 25539
107 Ga0501036_0088420 3300049572 Bacteria 2618
108 Ga0501047_0117429 3300049581 Bacteria 2542
109 Ga0501207_002367 3300049654 Unclassified 2429
110 Ga0501249_001261 3300049679 Bacteria 5308
111 Ga0501266_000001 3300049763 Bacteria 562004
112 Ga0501269_002681 3300049766 Unclassified 2173
113 Ga0501035_0005201 3300049822 Bacteria 12314
114 nmdc:mga08y16_289993_c1 3300050511 Bacteria 1687
115 Ga0500646_0003124 3300053090 Bacteria 4250
116 Ga0500641_0000004 3300053096 Bacteria 263911
117 Ga0500641_0000065 3300053096 Bacteria 42860
118 Ga0500641_0000328 3300053096 Bacteria 17563
119 Ga0500616_0001355 3300053153 Bacteria 23862

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025961 Ga0207712_10015921 Ga0207712_100159214 295
2 3300026118 Ga0207675_100031635 Ga0207675_1000316352 338
3 3300049572 Ga0501036_0088420 Ga0501036_0088420_111_1340 338
4 3300049581 Ga0501047_0117429 Ga0501047_0117429_1016_2245 338
5 3300049822 Ga0501035_0005201 Ga0501035_0005201_6498_7727 338
6 3300009176 Ga0105242_10005028 Ga0105242_100050283 340
7 3300025934 Ga0207686_10004547 Ga0207686_100045473 340
8 3300013104 Ga0157370_10002898 Ga0157370_100028984 345
9 3300006847 Ga0075431_100316456 Ga0075431_1003164562 346
10 3300013307 Ga0157372_10134484 Ga0157372_101344841 347
11 3300009092 Ga0105250_10006359 Ga0105250_100063594 348
12 3300031548 Ga0307408_100014420 Ga0307408_1000144203 348
13 3300048924 Ga0496121_0007618 Ga0496121_0007618_7287_8495 348
14 3300005365 Ga0070688_100040738 Ga0070688_1000407383 349
15 3300013307 Ga0157372_10323913 Ga0157372_103239132 349
16 3300014326 Ga0157380_10004590 Ga0157380_1000459012 349
17 3300005289 Ga0065704_10086684 Ga0065704_100866843 352
18 3300026116 Ga0207674_10078971 Ga0207674_100789713 354
19 3300032002 Ga0307416_100001219 Ga0307416_1000012195 355
20 3300005288 Ga0065714_10077049 Ga0065714_100770493 358
21 3300005289 Ga0065704_10070489 Ga0065704_1007048920 358
22 3300005293 Ga0065715_10097165 Ga0065715_100971652 358
23 3300006942 Ga0099824_1000030 Ga0099824_100003032 358
24 3300006946 Ga0079104_1000256 Ga0079104_100025652 358
25 3300006948 Ga0099826_10000148 Ga0099826_1000014813 358
26 3300009036 Ga0105244_10000025 Ga0105244_1000002572 358
27 3300013100 Ga0157373_10000003 Ga0157373_10000003263 358
28 3300013104 Ga0157370_10009728 Ga0157370_100097283 358
29 3300017792 Ga0163161_10000014 Ga0163161_1000001447 358
30 3300025728 Ga0207655_1000003 Ga0207655_1000003605 358
31 3300027111 Ga0209281_1000115 Ga0209281_100011521 358
32 3300027361 Ga0209489_107039 Ga0209489_1070393 358
33 3300027666 Ga0209282_1008931 Ga0209282_10089313 358
34 3300031731 Ga0307405_10000004 Ga0307405_10000004149 358
35 3300031824 Ga0307413_10000007 Ga0307413_1000000730 358
36 3300031901 Ga0307406_10016887 Ga0307406_100168873 358
37 3300032004 Ga0307414_10017040 Ga0307414_100170406 358
38 3300032004 Ga0307414_10077346 Ga0307414_100773462 358
39 3300032005 Ga0307411_10000033 Ga0307411_1000003346 358
40 3300033180 Ga0307510_10021478 Ga0307510_100214783 358
41 3300041407 Ga0439447_000094 Ga0439447_000094_20212_21420 358
42 3300041411 Ga0439466_0000154 Ga0439466_0000154_15908_17116 358
43 3300048927 Ga0496124_0089047 Ga0496124_0089047_237_1445 358
44 3300049763 Ga0501266_000001 Ga0501266_000001_121134_122387 358
45 3300053090 Ga0500646_0003124 Ga0500646_0003124_1604_2812 358
46 3300053096 Ga0500641_0000004 Ga0500641_0000004_24073_25281 358
47 3300053096 Ga0500641_0000065 Ga0500641_0000065_8951_10159 358
48 iso_pu_bacteria 2513020052 2513232879 358
49 iso_pu_bacteria 2519899754 2520880812 358
50 iso_pu_bacteria 2643221600 2644012328 358
51 iso_pu_bacteria 2643221667 2644371590 358
52 iso_pu_bacteria 2643221716 2644641071 358
53 iso_pu_bacteria 2643221725 2644682803 358
54 iso_pu_bacteria 2738541279 2738735703 358
55 iso_pu_bacteria 2738541285 2738768280 358
56 iso_pu_bacteria 2738543007 2739217285 358
57 iso_pu_bacteria 2739367857 2740000024 358
58 iso_pu_bacteria 2739367858 2740004840 358
59 iso_pu_bacteria 2802428842 2802651588 358
60 iso_pu_bacteria 2816332280 2817414459 358
61 iso_pu_bacteria 2857613821 2857615560 358
62 iso_pu_bacteria 2857618242 2857622022 358
63 iso_pu_bacteria 2881359912 2881360755 358
64 iso_pu_bacteria 2903895155 2903895541 358
65 iso_pu_bacteria 2904419702 2904424165 358
66 iso_pu_bacteria 2904555929 2904558101 358
67 iso_pu_bacteria 2919191525 2919192739 358
68 iso_pu_bacteria 2919509842 2919510370 358
69 iso_pu_bacteria 2919683626 2919683880 358
70 iso_pu_bacteria 2929150217 2929151583 358
71 iso_pu_bacteria 2958458903 2958459894 358
72 iso_pu_bacteria 2977268062 2977268324 358
73 iso_pu_bacteria 8054307821 8054309179 358
74 iso_pu_bacteria 8055419101 8055419770 358
75 iso_pu_bacteria 8055592153 8055596038 358
76 iso_pu_bacteria 8056440228 8056442877 358
77 3300005288 Ga0065714_10008839 Ga0065714_100088392 359
78 3300005327 Ga0070658_10103906 Ga0070658_101039062 359
79 3300013297 Ga0157378_10112067 Ga0157378_101120672 359
80 3300032004 Ga0307414_10014408 Ga0307414_100144082 359
81 3300037471 Ga0395905_0002103 Ga0395905_0002103_19496_20740 359
82 iso_pu_bacteria 2965320100 2965321779 359
83 3300005616 Ga0068852_100261094 Ga0068852_1002610941 360
84 3300013104 Ga0157370_10012399 Ga0157370_100123998 360
85 3300013306 Ga0163162_10060772 Ga0163162_100607723 360
86 3300017792 Ga0163161_10009907 Ga0163161_100099077 360
87 3300021384 Ga0213876_10007009 Ga0213876_100070097 360
88 3300027876 Ga0209974_10009064 Ga0209974_100090644 360
89 3300039437 Ga0436365_1482973 Ga0436365_1482973_5283_6500 360
90 3300046453 Ga0495627_006518 Ga0495627_006518_98_1318 360
91 3300046513 Ga0495616_0011466 Ga0495616_0011466_2247_3467 360
92 3300046522 Ga0495643_0000814 Ga0495643_0000814_7692_8912 360
93 3300048918 Ga0496115_0026951 Ga0496115_0026951_1934_3160 360
94 3300048928 Ga0496125_0000024 Ga0496125_0000024_419253_420479 360
95 3300048929 Ga0496126_0014383 Ga0496126_0014383_4298_5524 360
96 3300049679 Ga0501249_001261 Ga0501249_001261_2917_4185 360
97 3300053096 Ga0500641_0000328 Ga0500641_0000328_11939_13156 360
98 iso_pu_bacteria 2958512119 2958514073 360
99 3300013102 Ga0157371_10021241 Ga0157371_100212413 361
100 3300031548 Ga0307408_100000083 Ga0307408_10000008383 361
101 iso_pu_bacteria 2896085136 2896088721 361
102 3300025208 Ga0209436_104037 Ga0209436_1040373 363
103 3300025302 Ga0207426_1000073 Ga0207426_1000073206 363
104 3300042876 Ga0451577_0004040 Ga0451577_0004040_958_2175 363
105 3300044712 Ga0453684_0002642 Ga0453684_0002642_4297_5514 363
106 3300045051 Ga0451576_0028681 Ga0451576_0028681_1802_3019 363
107 3300048928 Ga0496125_0142358 Ga0496125_0142358_286_1521 363
108 3300049571 Ga0501034_0002020 Ga0501034_0002020_3037_4266 363
109 iso_pu_bacteria 2929177148 2929182372 363
110 iso_pu_bacteria 2945977869 2945978286 363
111 iso_pu_bacteria 2946013367 2946015854 363
112 3300002459 JGI24751J29686_10001452 JGI24751J29686_100014522 364
113 3300003323 rootH1_10031737 rootH1_100317375 364
114 3300005290 Ga0065712_10024179 Ga0065712_100241791 364
115 3300005290 Ga0065712_10112351 Ga0065712_101123512 364
116 3300005293 Ga0065715_10031517 Ga0065715_100315171 364
117 3300005334 Ga0068869_100040382 Ga0068869_1000403823 364
118 3300005365 Ga0070688_100061495 Ga0070688_1000614952 364
119 3300005471 Ga0070698_100002802 Ga0070698_1000028022 364
120 3300005471 Ga0070698_100006186 Ga0070698_1000061865 364
121 3300005471 Ga0070698_100016568 Ga0070698_1000165683 364
122 3300005617 Ga0068859_100238739 Ga0068859_1002387392 364
123 3300005617 Ga0068859_100259683 Ga0068859_1002596833 364
124 3300005618 Ga0068864_100069834 Ga0068864_1000698342 364
125 3300005841 Ga0068863_100099992 Ga0068863_1000999922 364
126 3300006931 Ga0097620_100238737 Ga0097620_1002387372 364
127 3300009093 Ga0105240_10122347 Ga0105240_101223471 364
128 3300009094 Ga0111539_10373921 Ga0111539_103739212 364
129 3300009176 Ga0105242_10033773 Ga0105242_100337736 364
130 3300009176 Ga0105242_10083142 Ga0105242_100831421 364
131 3300009553 Ga0105249_10009374 Ga0105249_1000937410 364
132 3300009553 Ga0105249_10030621 Ga0105249_100306212 364
133 3300013104 Ga0157370_10038547 Ga0157370_100385473 364
134 3300013306 Ga0163162_10029231 Ga0163162_100292314 364
135 3300013308 Ga0157375_10166291 Ga0157375_101662911 364
136 3300014326 Ga0157380_10021999 Ga0157380_100219996 364
137 3300014326 Ga0157380_10091246 Ga0157380_100912462 364
138 3300014745 Ga0157377_10023353 Ga0157377_100233532 364
139 3300025913 Ga0207695_10198363 Ga0207695_101983631 364
140 3300025934 Ga0207686_10132395 Ga0207686_101323952 364
141 3300025940 Ga0207691_10027421 Ga0207691_100274212 364
142 3300025942 Ga0207689_10006806 Ga0207689_1000680615 364
143 3300025942 Ga0207689_10011365 Ga0207689_100113651 364
144 3300026088 Ga0207641_10010823 Ga0207641_100108232 364
145 3300026095 Ga0207676_10198586 Ga0207676_101985862 364
146 3300026095 Ga0207676_10333880 Ga0207676_103338801 364
147 3300031251 Ga0265327_10000159 Ga0265327_1000015915 364
148 3300041997 Ga0439431_0000180 Ga0439431_0000180_6618_7877 364
149 3300046616 Ga0495668_0000235 Ga0495668_0000235_45496_46731 364
150 3300047319 Ga0495674_0145887 Ga0495674_0145887_585_1880 364
151 3300049654 Ga0501207_002367 Ga0501207_002367_1221_2399 364
152 3300049766 Ga0501269_002681 Ga0501269_002681_65_1300 364
153 3300050511 nmdc:mga08y16_289993_c1 nmdc:mga08y16_289993_c1_105_1352 364
154 3300053153 Ga0500616_0001355 Ga0500616_0001355_18081_19316 364
155 iso_pu_bacteria 2883068021 2883072177 364

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03486

HI0933_like

HI0933-like protein Rossmann domain

35

432

0.97

PF22780

HI0933_like_1st

HI0933-like protein barrel and H2TH domain

226

378

0.97

PF00890

FAD_binding_2

FAD binding domain

36

238

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
5l04-assembly1.cif.gz_A structure of interferon lambda 1 receptor with human kinase jak1 0.9013 93 115
2i0z-assembly1.cif.gz_A crystal structure of a fad binding protein from bacillus cereus, a putative nad(fad)-utilizing dehydrogenases 0.8623 3 362
4z32-assembly2.cif.gz_B crystal structure of the ferm-sh2 domains of jak2 0.8602 93 115
3v76-assembly1.cif.gz_A-2 the crystal structure of a flavoprotein from sinorhizobium meliloti 0.8536 2 361
2i0z-assembly1.cif.gz_A crystal structure of a fad binding protein from bacillus cereus, a putative nad(fad)-utilizing dehydrogenases 0.8516 3 362
ID Description Score Start End Superfamily
af_C6TL13_75_486_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9293 2 358 3.50.50.60
af_Q9VP46_133_237_2.30.29.30 Mainly Beta;Roll;PH-domain like;Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.9265 93 115 2.30.29.30
af_C6TL13_75_486_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9097 2 358 3.50.50.60
af_Q9SKB7_437_561_2.40.128.630 Mainly Beta;Beta Barrel;Lipocalin; 0.9079 94 117 2.40.128.630
af_A0A2R8RZD4_28_188_2.130.10.30 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II 0.8997 93 117 2.130.10.30
ID Description Score Start End GO Terms
AF-A0A6N6KIM9-F1-model_v4 NAD(P)/FAD-dependent oxidoreductase 0.9646 2 360
AF-A0A2T2VGH8-F1-model_v4 Aminoacetone oxidase family FAD-binding enzyme 0.9645 2 363
AF-A0A3D1TK15-F1-model_v4 Aminoacetone oxidase family FAD-binding enzyme 0.9643 4 359
AF-A0A2S7SWQ5-F1-model_v4 Aminoacetone oxidase family FAD-binding enzyme 0.9642 2 364
AF-A0A2H0FU23-F1-model_v4 Aminoacetone oxidase family FAD-binding enzyme 0.963 2 360

Feature Viewer

pLDDT pTM Quality
91.86 0.85 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map