F219220

General Info

Members Datasets Scaffolds Average Seq Length
154 113 153 343

Family's Representative Sequence

Representative Sequence 3300005937|Ga0081455_10010926|Ga0081455_100109262
Length 396
Sequence LRLRSRRTSSGLFASPSSAPKLLAAVKSRSWAVGAQSSARAPGKRIDPGVRQTLSVIDLRSDTVTQPTHQMREAMLIASVGDDVYAEDPTINELEQRVAQLLGHEAGLFCVSGSMCNMLGVRLLVEPGQEVVCDVQAHIARAEMGGHAAAHGLTMRTFPSTRGRMDPAEVAKIISPSAGPYLVSTAAVAVENTHNFGGGTIQPIDELTAVAELCREHGIGYHLDGARLWNAHVATGVALEAYGRLFDTVSVCFSKGLGAPVGSVLMSTAEHIAKARVMRKRLGGGWRQAGVLAAACLYALDHHVQRLADDHAAARTFAAAVAGCVPAAVNPDTVETNVVVINTGTSPAAPIAAAAAERGVQISALGPFMIRAVTHLDVTADNCEWAGQLVGKLLAA

Samples

Sample ID Description Type Environment
1 2808606365 Phycicoccus sp. SLBN-51 Isolate Unclassified
2 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
3 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
4 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
5 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
6 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
7 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
8 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
11 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
12 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
13 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
18 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
19 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
20 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
21 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
22 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
23 3300006194 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 Metagenome Rhizosphere
24 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
25 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
26 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
27 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
28 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
29 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
30 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
31 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
32 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
34 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
35 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
36 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
37 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
38 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
39 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
40 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
41 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
42 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
56 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
57 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
58 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
59 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
60 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
61 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
62 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
63 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
64 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
65 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
66 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
67 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
68 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
69 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
70 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
71 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
72 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
73 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
74 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
75 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
76 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
77 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
78 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
79 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
80 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
81 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
82 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
83 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
84 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
85 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
86 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
87 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
88 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
89 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
90 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
91 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
92 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
93 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
94 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
95 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
96 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
97 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
99 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
101 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
102 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
103 3300049851 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_B_0_drought Metagenome Rhizosphere
104 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
105 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
106 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
107 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
108 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
109 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
110 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
111 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
112 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
113 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.35
Metatranscriptomes 0
Isolates 0.65

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.65
Nodule 0
Rhizoplane 10.39
Rhizosphere 87.66
Stem 0
Stem Tuber 0
Unclassified 1.3

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070670_100036047 3300005331 Bacteria 4258
2 Ga0068868_100058204 3300005338 Bacteria 3054
3 Ga0070689_100009266 3300005340 Bacteria 6974
4 Ga0070668_100027348 3300005347 Bacteria 4330
5 Ga0070674_100031617 3300005356 Bacteria 3509
6 Ga0070659_100035490 3300005366 Bacteria 3882
7 Ga0070709_10000321 3300005434 Bacteria 30544
8 Ga0070714_100508202 3300005435 Bacteria 1150
9 Ga0070710_10032935 3300005437 Bacteria 2811
10 Ga0070678_100018518 3300005456 Bacteria 4515
11 Ga0070662_100008118 3300005457 Bacteria 6836
12 Ga0068853_100176604 3300005539 Bacteria 1935
13 Ga0068855_100046502 3300005563 Bacteria 5130
14 Ga0068854_100047638 3300005578 Bacteria 3056
15 Ga0068856_100454711 3300005614 Bacteria 1301
16 Ga0068861_100058651 3300005719 Bacteria 2945
17 Ga0068861_100073015 3300005719 Unclassified 2664
18 Ga0081455_10006220 3300005937 Bacteria 12865
19 Ga0081455_10006572 3300005937 Bacteria 12441
20 Ga0081455_10010926 3300005937 Bacteria 9158
21 Ga0081455_10013695 3300005937 Bacteria 7986
22 Ga0081455_10013735 3300005937 Bacteria 7971
23 Ga0081455_10024011 3300005937 Bacteria 5657
24 Ga0081538_10000025 3300005981 Bacteria 129366
25 Ga0081540_1002567 3300005983 Bacteria 14736
26 Ga0075432_10000113 3300006058 Bacteria 17706
27 Ga0075367_10179717 3300006178 Bacteria 1319
28 Ga0075427_10007123 3300006194 Bacteria 1639
29 Ga0097621_100065539 3300006237 Bacteria 2989
30 Ga0068871_100019014 3300006358 Bacteria 5237
31 Ga0075428_100053959 3300006844 Bacteria 4405
32 Ga0075428_100065681 3300006844 Bacteria 3973
33 Ga0075430_100070250 3300006846 Bacteria 2937
34 Ga0075433_10002268 3300006852 Bacteria 14620
35 Ga0075433_10166849 3300006852 Bacteria 1959
36 Ga0075434_100040009 3300006871 Bacteria 4644
37 Ga0075435_100000915 3300007076 Bacteria 18586
38 Ga0075435_100026664 3300007076 Bacteria 4511
39 Ga0105240_10025756 3300009093 Bacteria 7725
40 Ga0111539_10000347 3300009094 Bacteria 57043
41 Ga0111539_10090811 3300009094 Bacteria 3589
42 Ga0105245_10015331 3300009098 Bacteria 6679
43 Ga0105245_10045772 3300009098 Bacteria 3908
44 Ga0105243_10006568 3300009148 Bacteria 8984
45 Ga0105242_10028897 3300009176 Bacteria 4418
46 Ga0105238_10030163 3300009551 Bacteria 5519
47 Ga0105239_10348558 3300010375 Bacteria 1672
48 Ga0157371_10131524 3300013102 Bacteria 1781
49 Ga0157372_10036725 3300013307 Bacteria 5402
50 Ga0157380_10545574 3300014326 Bacteria 1136
51 Ga0163161_10074104 3300017792 Bacteria 2496
52 Ga0207688_10037770 3300025901 Bacteria 2679
53 Ga0207694_10016970 3300025924 Bacteria 5500
54 Ga0207650_10008350 3300025925 Bacteria 7068
55 Ga0207706_10007403 3300025933 Bacteria 10150
56 Ga0207661_10019951 3300025944 Bacteria 5004
57 Ga0207668_10064856 3300025972 Bacteria 2583
58 Ga0207640_10045921 3300025981 Bacteria 2808
59 Ga0207677_10002687 3300026023 Bacteria 9375
60 Ga0207677_10190294 3300026023 Bacteria 1622
61 Ga0207639_10410834 3300026041 Unclassified 1222
62 Ga0207702_10063341 3300026078 Bacteria 3161
63 Ga0207648_10057599 3300026089 Bacteria 3390
64 Ga0207675_100062182 3300026118 Bacteria 3486
65 Ga0207675_100102887 3300026118 Unclassified 2691
66 Ga0207683_10152296 3300026121 Bacteria 2087
67 Ga0207428_10002081 3300027907 Bacteria 20160
68 Ga0307408_100010981 3300031548 Bacteria 5976
69 Ga0307408_100015429 3300031548 Bacteria 5086
70 Ga0307408_100271737 3300031548 Bacteria 1408
71 Ga0316578_10028788 3300031728 Bacteria 3148
72 Ga0307405_10000632 3300031731 Bacteria 13539
73 Ga0307413_10001815 3300031824 Bacteria 8384
74 Ga0307413_10031243 3300031824 Bacteria 3002
75 Ga0307410_10001079 3300031852 Bacteria 11882
76 Ga0307410_10005957 3300031852 Bacteria 6522
77 Ga0307406_10002106 3300031901 Bacteria 10845
78 Ga0307406_10003034 3300031901 Bacteria 9138
79 Ga0307412_10025292 3300031911 Bacteria 3676
80 Ga0307412_10026849 3300031911 Bacteria 3584
81 Ga0307409_100000068 3300031995 Bacteria 38097
82 Ga0307409_100077892 3300031995 Bacteria 2664
83 Ga0307409_100510355 3300031995 Bacteria 1173
84 Ga0307416_100000041 3300032002 Bacteria 131920
85 Ga0307416_100006857 3300032002 Bacteria 7167
86 Ga0307414_10004434 3300032004 Bacteria 7621
87 Ga0307414_10015250 3300032004 Bacteria 4636
88 Ga0307411_10021673 3300032005 Bacteria 3766
89 Ga0307411_10025163 3300032005 Bacteria 3561
90 Ga0307415_100001854 3300032126 Bacteria 10362
91 Ga0307415_100004027 3300032126 Bacteria 7574
92 Ga0373933_0064387 3300035724 Bacteria 2218
93 Ga0316584_0001976 3300036712 Bacteria 12805
94 Ga0373925_0034082 3300037068 Bacteria 3753
95 Ga0395899_0214096 3300037312 Bacteria 1338
96 Ga0395898_0067902 3300037466 Bacteria 3451
97 Ga0436365_0727417 3300039437 Bacteria 1838
98 Ga0439448_0027160 3300042005 Bacteria 1803
99 Ga0439463_002387 3300042016 Bacteria 4787
100 Ga0439460_0084084 3300042461 Bacteria 1003
101 Ga0466963_0032967 3300044694 Bacteria 3358
102 Ga0466963_0083495 3300044694 Bacteria 2166
103 Ga0466960_0117186 3300044901 Bacteria 1391
104 Ga0451576_0003681 3300045051 Bacteria 20787
105 Ga0451576_0010817 3300045051 Bacteria 10444
106 Ga0466967_0003719 3300045976 Bacteria 10053
107 Ga0466967_0020327 3300045976 Bacteria 5363
108 Ga0466967_0292045 3300045976 Bacteria 1566
109 Ga0495582_0110072 3300046473 Bacteria 1547
110 Ga0495594_0003988 3300046499 Bacteria 7592
111 Ga0495640_0126541 3300046533 Bacteria 1657
112 Ga0495659_0053149 3300046664 Unclassified 1480
113 Ga0495588_0013254 3300046674 Bacteria 3924
114 Ga0495660_0143056 3300046810 Bacteria 1188
115 Ga0495636_0111172 3300047318 Bacteria 1206
116 Ga0496101_0003568 3300048904 Bacteria 9707
117 Ga0496102_0371089 3300048905 Bacteria 1347
118 Ga0496104_0076350 3300048907 Bacteria 3191
119 Ga0496108_0006807 3300048911 Bacteria 9251
120 Ga0496108_0015191 3300048911 Bacteria 6282
121 Ga0496109_0009693 3300048912 Bacteria 8220
122 Ga0496109_0064540 3300048912 Bacteria 3351
123 Ga0496110_0009371 3300048913 Bacteria 7924
124 Ga0496110_0020297 3300048913 Bacteria 5609
125 Ga0496110_0024083 3300048913 Bacteria 5187
126 Ga0496112_0227050 3300048915 Bacteria 1822
127 Ga0496112_0576373 3300048915 Bacteria 1058
128 Ga0496113_0010613 3300048916 Bacteria 6099
129 Ga0496113_0076519 3300048916 Bacteria 2557
130 Ga0496114_0075675 3300048917 Bacteria 2836
131 Ga0496114_0204857 3300048917 Bacteria 1729
132 Ga0501034_0173121 3300049571 Bacteria 2125
133 Ga0501034_0422773 3300049571 Bacteria 1253
134 Ga0501042_0280063 3300049578 Bacteria 1204
135 Ga0501042_0428051 3300049578 Bacteria 959
136 Ga0501043_0149183 3300049579 Bacteria 1830
137 Ga0501069_0172345 3300049585 Bacteria 1249
138 Ga0501071_0158338 3300049587 Bacteria 1692
139 Ga0501077_0018722 3300049593 Bacteria 4380
140 Ga0501212_011853 3300049851 Bacteria 1262
141 nmdc:mga05p37_32153_c1 3300050507 Bacteria 6416
142 nmdc:mga09592_15435_c1 3300050508 Bacteria 6240
143 nmdc:mga0qj67_113819_c1 3300050509 Bacteria 2185
144 nmdc:mga06r32_188723_c1 3300050510 Bacteria 2048
145 nmdc:mga08y16_18265_c1 3300050511 Bacteria 7389
146 nmdc:mga08y16_74361_c1 3300050511 Bacteria 3541
147 nmdc:mga0n895_5861_c1 3300050512 Bacteria 10326
148 nmdc:mga0n895_77692_c1 3300050512 Bacteria 3303
149 nmdc:mga0rr50_7315_c1 3300050513 Bacteria 6796
150 nmdc:mga08x19_113298_c1 3300050514 Bacteria 1811
151 nmdc:mga0a205_179494_c1 3300050515 Bacteria 2012
152 nmdc:mga0a205_4291_c1 3300050515 Bacteria 12792
153 Ga0495619_0043911 3300053085 Bacteria 2932

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049578 Ga0501042_0428051 Ga0501042_0428051_21_914 293
2 3300026078 Ga0207702_10063341 Ga0207702_100633412 309
3 3300005937 Ga0081455_10006572 Ga0081455_100065723 319
4 3300005937 Ga0081455_10013695 Ga0081455_100136955 319
5 3300006237 Ga0097621_100065539 Ga0097621_1000655393 319
6 3300042461 Ga0439460_0084084 Ga0439460_0084084_24_992 319
7 3300017792 Ga0163161_10074104 Ga0163161_100741043 320
8 3300046473 Ga0495582_0110072 Ga0495582_0110072_549_1529 320
9 3300048915 Ga0496112_0576373 Ga0496112_0576373_23_1003 320
10 3300050510 nmdc:mga06r32_188723_c1 nmdc:mga06r32_188723_c1_313_1293 320
11 3300005981 Ga0081538_10000025 Ga0081538_1000002510 323
12 3300006844 Ga0075428_100053959 Ga0075428_1000539592 323
13 3300031824 Ga0307413_10031243 Ga0307413_100312433 323
14 3300046810 Ga0495660_0143056 Ga0495660_0143056_21_1001 323
15 3300049851 Ga0501212_011853 Ga0501212_011853_254_1234 323
16 3300049571 Ga0501034_0422773 Ga0501034_0422773_160_1146 324
17 3300009093 Ga0105240_10025756 Ga0105240_100257564 325
18 3300044694 Ga0466963_0032967 Ga0466963_0032967_505_1488 325
19 3300044694 Ga0466963_0083495 Ga0466963_0083495_1065_2048 325
20 3300045976 Ga0466967_0020327 Ga0466967_0020327_2525_3508 325
21 3300049571 Ga0501034_0173121 Ga0501034_0173121_198_1184 325
22 3300049585 Ga0501069_0172345 Ga0501069_0172345_126_1109 325
23 3300031548 Ga0307408_100015429 Ga0307408_1000154293 326
24 3300031852 Ga0307410_10001079 Ga0307410_100010794 326
25 3300031901 Ga0307406_10002106 Ga0307406_100021067 326
26 3300031995 Ga0307409_100000068 Ga0307409_10000006829 326
27 3300032002 Ga0307416_100000041 Ga0307416_10000004138 326
28 3300032004 Ga0307414_10015250 Ga0307414_100152505 326
29 3300032126 Ga0307415_100001854 Ga0307415_10000185412 326
30 3300009551 Ga0105238_10030163 Ga0105238_100301635 328
31 3300048917 Ga0496114_0204857 Ga0496114_0204857_653_1675 328
32 3300049593 Ga0501077_0018722 Ga0501077_0018722_2709_3707 329
33 3300053085 Ga0495619_0043911 Ga0495619_0043911_1337_2332 329
34 3300006178 Ga0075367_10179717 Ga0075367_101797172 332
35 3300031548 Ga0307408_100271737 Ga0307408_1002717372 334
36 3300014326 Ga0157380_10545574 Ga0157380_105455741 335
37 3300035724 Ga0373933_0064387 Ga0373933_0064387_413_1441 335
38 3300005614 Ga0068856_100454711 Ga0068856_1004547111 337
39 3300005983 Ga0081540_1002567 Ga0081540_100256710 337
40 3300006358 Ga0068871_100019014 Ga0068871_1000190146 337
41 3300026023 Ga0207677_10002687 Ga0207677_100026876 337
42 3300026023 Ga0207677_10190294 Ga0207677_101902942 337
43 3300037068 Ga0373925_0034082 Ga0373925_0034082_839_1870 337
44 3300048907 Ga0496104_0076350 Ga0496104_0076350_1934_2965 337
45 3300048911 Ga0496108_0006807 Ga0496108_0006807_5192_6223 337
46 3300048911 Ga0496108_0015191 Ga0496108_0015191_4114_5145 337
47 3300048912 Ga0496109_0009693 Ga0496109_0009693_6498_7529 337
48 3300048913 Ga0496110_0009371 Ga0496110_0009371_3779_4810 337
49 3300048913 Ga0496110_0020297 Ga0496110_0020297_2670_3701 337
50 3300048915 Ga0496112_0227050 Ga0496112_0227050_279_1310 337
51 3300048916 Ga0496113_0010613 Ga0496113_0010613_3047_4078 337
52 3300005347 Ga0070668_100027348 Ga0070668_1000273483 338
53 3300005356 Ga0070674_100031617 Ga0070674_1000316173 338
54 3300005457 Ga0070662_100008118 Ga0070662_1000081185 338
55 3300005578 Ga0068854_100047638 Ga0068854_1000476382 338
56 3300005719 Ga0068861_100058651 Ga0068861_1000586513 338
57 3300005937 Ga0081455_10013735 Ga0081455_100137356 338
58 3300005937 Ga0081455_10024011 Ga0081455_100240112 338
59 3300006058 Ga0075432_10000113 Ga0075432_1000011310 338
60 3300006852 Ga0075433_10002268 Ga0075433_100022684 338
61 3300007076 Ga0075435_100000915 Ga0075435_10000091515 338
62 3300009094 Ga0111539_10000347 Ga0111539_1000034736 338
63 3300009098 Ga0105245_10015331 Ga0105245_100153316 338
64 3300009148 Ga0105243_10006568 Ga0105243_100065687 338
65 3300009176 Ga0105242_10028897 Ga0105242_100288974 338
66 3300010375 Ga0105239_10348558 Ga0105239_103485582 338
67 3300013102 Ga0157371_10131524 Ga0157371_101315242 338
68 3300013307 Ga0157372_10036725 Ga0157372_100367254 338
69 3300025901 Ga0207688_10037770 Ga0207688_100377703 338
70 3300025933 Ga0207706_10007403 Ga0207706_100074035 338
71 3300025972 Ga0207668_10064856 Ga0207668_100648563 338
72 3300025981 Ga0207640_10045921 Ga0207640_100459213 338
73 3300026089 Ga0207648_10057599 Ga0207648_100575993 338
74 3300026118 Ga0207675_100062182 Ga0207675_1000621822 338
75 3300027907 Ga0207428_10002081 Ga0207428_100020814 338
76 3300031731 Ga0307405_10000632 Ga0307405_100006321 338
77 3300031824 Ga0307413_10001815 Ga0307413_100018157 338
78 3300031852 Ga0307410_10005957 Ga0307410_100059573 338
79 3300031901 Ga0307406_10003034 Ga0307406_100030342 338
80 3300031911 Ga0307412_10026849 Ga0307412_100268494 338
81 3300032002 Ga0307416_100006857 Ga0307416_1000068572 338
82 3300032004 Ga0307414_10004434 Ga0307414_100044341 338
83 3300032005 Ga0307411_10025163 Ga0307411_100251633 338
84 3300042005 Ga0439448_0027160 Ga0439448_0027160_11_1036 338
85 3300042016 Ga0439463_002387 Ga0439463_002387_3220_4245 338
86 3300047318 Ga0495636_0111172 Ga0495636_0111172_139_1164 338
87 3300050511 nmdc:mga08y16_18265_c1 nmdc:mga08y16_18265_c1_355_1380 338
88 3300050512 nmdc:mga0n895_5861_c1 nmdc:mga0n895_5861_c1_4004_5029 338
89 3300050513 nmdc:mga0rr50_7315_c1 nmdc:mga0rr50_7315_c1_3369_4394 338
90 3300050514 nmdc:mga08x19_113298_c1 nmdc:mga08x19_113298_c1_587_1612 338
91 3300050515 nmdc:mga0a205_4291_c1 nmdc:mga0a205_4291_c1_1555_2580 338
92 3300009098 Ga0105245_10045772 Ga0105245_100457722 339
93 3300046499 Ga0495594_0003988 Ga0495594_0003988_5247_6275 339
94 3300046664 Ga0495659_0053149 Ga0495659_0053149_340_1368 339
95 3300046674 Ga0495588_0013254 Ga0495588_0013254_627_1655 339
96 3300048916 Ga0496113_0076519 Ga0496113_0076519_1296_2324 339
97 3300048905 Ga0496102_0371089 Ga0496102_0371089_215_1246 340
98 3300048912 Ga0496109_0064540 Ga0496109_0064540_1198_2229 340
99 3300048913 Ga0496110_0024083 Ga0496110_0024083_1621_2652 340
100 3300048917 Ga0496114_0075675 Ga0496114_0075675_506_1537 340
101 3300005456 Ga0070678_100018518 Ga0070678_1000185184 341
102 3300005937 Ga0081455_10006220 Ga0081455_100062206 341
103 3300026121 Ga0207683_10152296 Ga0207683_101522962 341
104 3300005338 Ga0068868_100058204 Ga0068868_1000582042 342
105 3300005340 Ga0070689_100009266 Ga0070689_1000092662 342
106 3300005366 Ga0070659_100035490 Ga0070659_1000354902 342
107 3300005434 Ga0070709_10000321 Ga0070709_1000032120 342
108 3300005435 Ga0070714_100508202 Ga0070714_1005082021 342
109 3300005437 Ga0070710_10032935 Ga0070710_100329351 342
110 3300005539 Ga0068853_100176604 Ga0068853_1001766042 342
111 3300006194 Ga0075427_10007123 Ga0075427_100071231 342
112 3300006844 Ga0075428_100065681 Ga0075428_1000656813 342
113 3300006846 Ga0075430_100070250 Ga0075430_1000702503 342
114 3300006852 Ga0075433_10166849 Ga0075433_101668492 342
115 3300006871 Ga0075434_100040009 Ga0075434_1000400092 342
116 3300007076 Ga0075435_100026664 Ga0075435_1000266643 342
117 3300009094 Ga0111539_10090811 Ga0111539_100908113 342
118 3300026041 Ga0207639_10410834 Ga0207639_104108341 342
119 3300039437 Ga0436365_0727417 Ga0436365_0727417_546_1613 342
120 3300050508 nmdc:mga09592_15435_c1 nmdc:mga09592_15435_c1_25_1074 342
121 3300005937 Ga0081455_10010926 Ga0081455_100109262 343
122 3300025944 Ga0207661_10019951 Ga0207661_100199512 343
123 3300031548 Ga0307408_100010981 Ga0307408_1000109812 343
124 3300031911 Ga0307412_10025292 Ga0307412_100252922 343
125 3300031995 Ga0307409_100077892 Ga0307409_1000778922 343
126 3300032005 Ga0307411_10021673 Ga0307411_100216732 343
127 3300032126 Ga0307415_100004027 Ga0307415_10000402711 343
128 3300044901 Ga0466960_0117186 Ga0466960_0117186_84_1133 343
129 3300045976 Ga0466967_0003719 Ga0466967_0003719_3634_4683 343
130 3300048904 Ga0496101_0003568 Ga0496101_0003568_731_1780 343
131 3300050507 nmdc:mga05p37_32153_c1 nmdc:mga05p37_32153_c1_1027_2082 343
132 3300050509 nmdc:mga0qj67_113819_c1 nmdc:mga0qj67_113819_c1_324_1379 343
133 3300050511 nmdc:mga08y16_74361_c1 nmdc:mga08y16_74361_c1_760_1815 343
134 3300050512 nmdc:mga0n895_77692_c1 nmdc:mga0n895_77692_c1_1968_3023 343
135 3300050515 nmdc:mga0a205_179494_c1 nmdc:mga0a205_179494_c1_329_1384 343
136 iso_pu_bacteria 2808606365 2808873826 343
137 3300049578 Ga0501042_0280063 Ga0501042_0280063_82_1125 344
138 3300031995 Ga0307409_100510355 Ga0307409_1005103551 345
139 3300045976 Ga0466967_0292045 Ga0466967_0292045_154_1212 345
140 3300005563 Ga0068855_100046502 Ga0068855_1000465023 347
141 3300005719 Ga0068861_100073015 Ga0068861_1000730153 347
142 3300025924 Ga0207694_10016970 Ga0207694_100169703 347
143 3300026118 Ga0207675_100102887 Ga0207675_1001028873 347
144 3300049587 Ga0501071_0158338 Ga0501071_0158338_396_1448 347
145 3300045051 Ga0451576_0003681 Ga0451576_0003681_14917_15978 348
146 3300031728 Ga0316578_10028788 Ga0316578_100287882 349
147 3300036712 Ga0316584_0001976 Ga0316584_0001976_6558_7616 349
148 3300037312 Ga0395899_0214096 Ga0395899_0214096_95_1171 350
149 3300037466 Ga0395898_0067902 Ga0395898_0067902_2325_3401 350
150 3300046533 Ga0495640_0126541 Ga0495640_0126541_163_1230 350
151 3300045051 Ga0451576_0010817 Ga0451576_0010817_4153_5208 351
152 3300049579 Ga0501043_0149183 Ga0501043_0149183_198_1319 352
153 3300005331 Ga0070670_100036047 Ga0070670_1000360474 353
154 3300025925 Ga0207650_10008350 Ga0207650_100083502 353

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01212

Beta_elim_lyase

Beta-eliminating lyase

58

343

0.99

PF00155

Aminotran_1_2

Aminotransferase class I and II

53

372

0.71

Structural Annotation

Top 5 Hits

ID Description Score Start End
1jg8-assembly1.cif.gz_A crystal structure of threonine aldolase (low-specificity) 0.9712 7 341
1jg8-assembly1.cif.gz_C crystal structure of threonine aldolase (low-specificity) 0.9667 7 341
3wgc-assembly1.cif.gz_A aeromonas jandaei l-allo-threonine aldolase h128y/s292r double mutant 0.9553 6 337
3wgc-assembly1.cif.gz_C aeromonas jandaei l-allo-threonine aldolase h128y/s292r double mutant 0.9549 6 337
3wgb-assembly1.cif.gz_A crystal structure of aeromonas jandaei l-allo-threonine aldolase 0.9522 7 337
ID Description Score Start End Superfamily
af_A0A1D6EP40_204_303_3.40.640.10 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9756 148 246 3.40.640.10
1jg8A01 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.971 7 246 3.40.640.10
af_A0A1D6E671_253_349_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9571 250 341 3.90.1150.10
af_A0A1D6EP40_204_303_3.40.640.10 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9567 148 246 3.40.640.10
1jg8A01 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9477 7 246 3.40.640.10
ID Description Score Start End GO Terms
AF-A0A2M7ZHP3-F1-model_v4 Low specificity L-threonine aldolase 0.9835 7 268 GO:0005829
GO:0006545
GO:0006567
GO:0008732
AF-A0A2W4KMV1-F1-model_v4 Low specificity L-threonine aldolase 0.9821 4 339 GO:0005829
GO:0006545
GO:0006567
GO:0008732
AF-A0A7V5I243-F1-model_v4 Low-specificity L-threonine aldolase (EC 4.1.2.48) 0.9816 7 338 GO:0005829
GO:0006545
GO:0006567
GO:0008732
AF-A0A5C5XEM2-F1-model_v4 L-allo-threonine aldolase (EC 4.1.2.49) 0.9802 7 342 GO:0005829
GO:0006545
GO:0006567
GO:0008732
AF-A0A849TV36-F1-model_v4 Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 0.9801 7 340 GO:0005829
GO:0006545
GO:0006567
GO:0008483
GO:0008732

Feature Viewer

pLDDT pTM Quality
94.98 0.92 High
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Predicted Structure (AlphaFold2)

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