F217753

General Info

Members Datasets Scaffolds Average Seq Length
153 110 306 521

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0199131|Ga0453684_0199131_461_2272
Length 572
Sequence MKNKFIIAVTALAISGFTLSSCFNDLDLAPPSGINAETVYNNPDNYIHVLAKLYAGLAISGNQGPAGNPDIAGIDEGFSQYVRVLWNLQEVTTDAAKCAWNDPGIPELNKMQWSSTNSFVNAMYYRIYFQIPLCNEFIRESSDANMSDRGFTDADQTLIRGYRTEARFLRALSYYHALDLFGNVPFVTEEDVVGAFYPEQISRADLFNYVESELLAIAGELPAPQANEYGRTDKAAAWTLLARLYLNAEVYTGTARYADCATYCQKVINEGGYTLEPVYDHLFMSDNQGSNEVIFPVTFDGQFTQTYGGTTFLTHSTVGGDSLSQIDKAYYGIEFGWGGNRSTPQYAAFFPDADDARNMFKTFGQTLEFTEDAQLGQFVVGYPIAKWRNVLSTGSGIAGENKITEFISGTGGTGTYRLAVSDNVTSPTTIHAAIPGTNLDAGGNYTDIDFPMMRYADVLLMYAECAARGAGDAGLGVEYVNMLRERAYGDASHNVASITPESILEERARELQWEGYRRTDLIRYGLFSGGTYVWAFKGGPFNGTTVPETINLFPLPAADVVANPNLTQNPGY

Samples

Sample ID Description Type Environment
1 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
2 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
8 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
12 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
13 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
14 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
15 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
18 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
19 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
20 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
21 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
23 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
24 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
25 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
26 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
27 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
28 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
29 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
30 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
31 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
32 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
33 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
34 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
35 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
36 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
37 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
38 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
39 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
40 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
55 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
56 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
57 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
58 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
59 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
60 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
61 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
62 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
63 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
64 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
65 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
66 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
67 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
68 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
69 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
70 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
71 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
72 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
73 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
74 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
75 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
76 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
77 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
78 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
79 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
80 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
83 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
84 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
85 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
86 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
87 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
88 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
89 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
90 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
91 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
92 2511231000 Chryseobacterium populi CF314 Isolate Rhizosphere
93 2523533629 Kaistella palustris DSM 21579 Isolate Rhizosphere
94 2582581281 Chryseobacterium sp. CF284 Isolate Rhizosphere
95 2582581282 Chryseobacterium sp. CF299 Isolate Rhizosphere
96 2585428183 Chryseobacterium sp. YR485 Isolate Rhizosphere
97 2585428187 Chryseobacterium sp. YR460 Isolate Rhizosphere
98 2739367874 Chryseobacterium sp. T16E-39 Isolate Unclassified
99 2772190705 Chryseobacterium contaminans C-26 Isolate Rhizosphere
100 2775506739 Chryseobacterium sp. 1335 Isolate Unclassified
101 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
102 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
103 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
104 2919097161 Chryseobacterium ginsenosidimutans 1394 Isolate Rhizosphere
105 2945924605 Chryseobacterium ginsenosidimutans W1I9 Isolate Rhizosphere
106 2946019816 Chryseobacterium sp. W4I1 Isolate Rhizosphere
107 2984572630 Chryseobacterium sp. SORGH_AS909 Isolate Aerial Root
108 2984606641 Chryseobacterium sp. SORGH_AS1175 Isolate Aerial Root
109 2993480792 Chryseobacterium nepalense SLBN-92 Isolate Rhizosphere
110 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 87.58
Metatranscriptomes 0
Isolates 12.42

Biome Distribution

Category Percentage (%)
Aerial Root 1.31
Bulb 0
Endosphere 8.5
Nodule 0
Rhizoplane 0
Rhizosphere 77.12
Stem 0
Stem Tuber 0
Unclassified 3.27

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0453684_0199131 3300044712 Bacteria 2336
2 JGI25153J46596_10001555 3300003215 Bacteria 13616
3 rootH1_10002498 3300003316 Bacteria 7877
4 rootH2_10007161 3300003320 Bacteria 44535
5 rootH2_10021730 3300003320 Bacteria 1884
6 rootH2_10022398 3300003320 Bacteria 13364
7 rootH2_10070086 3300003320 Bacteria 7786
8 rootL2_10019423 3300003322 Bacteria 9390
9 rootL2_10114401 3300003322 Bacteria 8812
10 rootH1_10034561 3300003323 Bacteria 5493
11 rootH1_10058346 3300003323 Bacteria 5036
12 JGI25160J50197_1002551 3300003354 Bacteria 8427
13 Ga0070658_10004046 3300005327 Bacteria 12015
14 Ga0070675_100002884 3300005354 Bacteria 12960
15 Ga0070671_100038492 3300005355 Bacteria 3970
16 Ga0070673_100096807 3300005364 Bacteria 2422
17 Ga0070659_100075635 3300005366 Bacteria 2684
18 Ga0068867_100067616 3300005459 Bacteria 2665
19 Ga0070686_100000208 3300005544 Bacteria 40721
20 Ga0068857_100038857 3300005577 Bacteria 4214
21 Ga0068856_100000899 3300005614 Bacteria 31842
22 Ga0068856_100037581 3300005614 Bacteria 4750
23 Ga0068856_100060256 3300005614 Bacteria 3750
24 Ga0068852_100000133 3300005616 Bacteria 49905
25 Ga0068860_100006517 3300005843 Bacteria 11717
26 Ga0081540_1015317 3300005983 Unclassified 4859
27 Ga0105240_10000231 3300009093 Bacteria 110451
28 Ga0105240_10000304 3300009093 Bacteria 95162
29 Ga0105240_10002180 3300009093 Bacteria 31969
30 Ga0105240_10020254 3300009093 Bacteria 8879
31 Ga0105240_10043496 3300009093 Bacteria 5714
32 Ga0105240_10065032 3300009093 Bacteria 4529
33 Ga0111539_10159743 3300009094 Bacteria 2636
34 Ga0105241_10012617 3300009174 Bacteria 6200
35 Ga0105248_10028941 3300009177 Bacteria 6176
36 Ga0105237_10000052 3300009545 Bacteria 160459
37 Ga0105237_10002326 3300009545 Bacteria 23593
38 Ga0105237_10006624 3300009545 Bacteria 12800
39 Ga0105237_10008910 3300009545 Bacteria 10812
40 Ga0105237_10027857 3300009545 Bacteria 5757
41 Ga0105238_10036473 3300009551 Bacteria 4998
42 Ga0105239_10002348 3300010375 Bacteria 24115
43 Ga0105239_10024409 3300010375 Bacteria 6662
44 Ga0157371_10000081 3300013102 Bacteria 151138
45 Ga0157371_10003042 3300013102 Bacteria 15561
46 Ga0157370_10024560 3300013104 Bacteria 5969
47 Ga0157374_10098899 3300013296 Unclassified 2794
48 Ga0163162_10002280 3300013306 Bacteria 18007
49 Ga0163162_10105103 3300013306 Bacteria 2918
50 Ga0157372_10057061 3300013307 Bacteria 4364
51 Ga0157375_10000267 3300013308 Bacteria 47497
52 Ga0157375_10020972 3300013308 Bacteria 5981
53 Ga0157380_10001771 3300014326 Bacteria 14268
54 Ga0182006_1000039 3300015261 Bacteria 211568
55 Ga0163161_10007284 3300017792 Bacteria 7634
56 Ga0209436_101150 3300025208 Bacteria 9771
57 Ga0209233_1009302 3300025261 Bacteria 2997
58 Ga0209758_1001443 3300025297 Bacteria 28004
59 Ga0207426_1001338 3300025302 Bacteria 20922
60 Ga0207426_1008243 3300025302 Bacteria 4236
61 Ga0207705_10018827 3300025909 Bacteria 4938
62 Ga0207654_10015630 3300025911 Bacteria 3943
63 Ga0207695_10000117 3300025913 Bacteria 237982
64 Ga0207695_10000412 3300025913 Bacteria 95172
65 Ga0207695_10004900 3300025913 Bacteria 18036
66 Ga0207695_10037418 3300025913 Bacteria 5235
67 Ga0207695_10081338 3300025913 Bacteria 3278
68 Ga0207671_10001621 3300025914 Bacteria 25613
69 Ga0207671_10003402 3300025914 Bacteria 15911
70 Ga0207671_10015993 3300025914 Bacteria 5847
71 Ga0207671_10029335 3300025914 Unclassified 4107
72 Ga0207649_10026857 3300025920 Bacteria 3372
73 Ga0207650_10012415 3300025925 Bacteria 5882
74 Ga0207659_10015851 3300025926 Bacteria 4896
75 Ga0207644_10076216 3300025931 Bacteria 2467
76 Ga0207669_10093610 3300025937 Bacteria 1964
77 Ga0207691_10004122 3300025940 Bacteria 14120
78 Ga0207667_10062867 3300025949 Bacteria 3880
79 Ga0207702_10000507 3300026078 Bacteria 43964
80 Ga0207674_10006363 3300026116 Bacteria 13897
81 Ga0268264_10009702 3300028381 Bacteria 7971
82 Ga0307517_10006442 3300028786 Bacteria 17375
83 Ga0265338_10035550 3300028800 Bacteria 4786
84 Ga0307511_10001102 3300030521 Bacteria 28775
85 Ga0265327_10000404 3300031251 Bacteria 80704
86 Ga0307513_10086916 3300031456 Bacteria 3203
87 Ga0307408_100002427 3300031548 Bacteria 13096
88 Ga0307408_100026656 3300031548 Bacteria 3973
89 Ga0307405_10026118 3300031731 Bacteria 3365
90 Ga0307412_10000034 3300031911 Bacteria 206033
91 Ga0307412_10000265 3300031911 Bacteria 33691
92 Ga0307416_100014468 3300032002 Bacteria 5412
93 Ga0307414_10000067 3300032004 Bacteria 103245
94 Ga0307414_10016106 3300032004 Bacteria 4535
95 Ga0395899_0000017 3300037312 Bacteria 440179
96 Ga0439445_0000109 3300042004 Bacteria 13734
97 Ga0466972_0000530 3300044658 Bacteria 18742
98 Ga0466972_0004827 3300044658 Bacteria 6762
99 Ga0453684_0001989 3300044712 Bacteria 52435
100 Ga0453684_0007917 3300044712 Bacteria 19275
101 Ga0453684_0008898 3300044712 Bacteria 17781
102 Ga0453684_0013670 3300044712 Bacteria 13150
103 Ga0453684_0021254 3300044712 Bacteria 9711
104 Ga0453684_0085380 3300044712 Unclassified 3922
105 Ga0466968_0023101 3300044735 Bacteria 2531
106 Ga0466957_0011594 3300044842 Bacteria 5093
107 Ga0451576_0016536 3300045051 Bacteria 8137
108 Ga0495638_0000003 3300046460 Bacteria 888792
109 Ga0495606_0023660 3300046507 Bacteria 4445
110 Ga0495610_0000001 3300046512 Bacteria 1620061
111 Ga0495648_0004362 3300046524 Bacteria 12114
112 Ga0495621_0001216 3300046539 Bacteria 6635
113 Ga0495633_0000057 3300046558 Bacteria 148536
114 Ga0495611_0000179 3300046648 Bacteria 45869
115 Ga0495687_005055 3300047443 Bacteria 8587
116 Ga0495686_0000022 3300047472 Bacteria 403456
117 Ga0495686_0080898 3300047472 Bacteria 1985
118 Ga0496125_0000645 3300048928 Bacteria 58185
119 Ga0496125_0080677 3300048928 Bacteria 2489
120 Ga0501034_0096169 3300049571 Bacteria 2958
121 Ga0501047_0124977 3300049581 Unclassified 2453
122 Ga0501083_0020089 3300049744 Bacteria 4647
123 Ga0501241_000016 3300049758 Bacteria 99183
124 Ga0501269_000369 3300049766 Bacteria 11111
125 Ga0501044_0039219 3300049823 Bacteria 4942
126 Ga0501044_0043499 3300049823 Bacteria 4665
127 nmdc:mga08y16_136304_c1 3300050511 Bacteria 2551
128 Ga0500583_0002662 3300053092 Bacteria 5428
129 Ga0500604_0000801 3300053151 Bacteria 8684
130 Ga0500616_0000007 3300053153 Bacteria 836875
131 Ga0500622_0000103 3300053156 Bacteria 86203
132 Ga0500622_0000181 3300053156 Bacteria 67823
133 Ga0500622_0004500 3300053156 Bacteria 8726
134 Ga0501084_0002652 3300054114 Bacteria 14413
135 2511232830 2511231000 Bacteria 4488346
136 2524004710 2523533629 Bacteria 2982326
137 2585158144 2582581281 Bacteria 4487904
138 2585162349 2582581282 Bacteria 4495830
139 2588212475 2585428183 Bacteria 5166119
140 2588231731 2585428187 Bacteria 4629388
141 2740057016 2739367874 Bacteria 4872888
142 2772606844 2772190705 Bacteria 4666226
143 2775673322 2775506739 Bacteria 3855222
144 2819572573 2818991442 Bacteria 8318214
145 2821140028 2821136567 Bacteria 8080116
146 2904472149 2904467357 Bacteria 8057758
147 2919097431 2919097161 Bacteria 3860339
148 2945927683 2945924605 Bacteria 4296724
149 2946020689 2946019816 Bacteria 4621265
150 2984575478 2984572630 Bacteria 4186940
151 2984608930 2984606641 Bacteria 4186971
152 2993480922 2993480792 Bacteria 4022225
153 8003154312 8003151029 Bacteria 8187759
154 Ga0453684_0199131
155 JGI25153J46596_10001555
156 rootH1_10002498
157 rootH2_10007161
158 rootH2_10021730
159 rootH2_10022398
160 rootH2_10070086
161 rootL2_10019423
162 rootL2_10114401
163 rootH1_10034561
164 rootH1_10058346
165 JGI25160J50197_1002551
166 Ga0070658_10004046
167 Ga0070675_100002884
168 Ga0070671_100038492
169 Ga0070673_100096807
170 Ga0070659_100075635
171 Ga0068867_100067616
172 Ga0070686_100000208
173 Ga0068857_100038857
174 Ga0068856_100000899
175 Ga0068856_100037581
176 Ga0068856_100060256
177 Ga0068852_100000133
178 Ga0068860_100006517
179 Ga0081540_1015317
180 Ga0105240_10000231
181 Ga0105240_10000304
182 Ga0105240_10002180
183 Ga0105240_10020254
184 Ga0105240_10043496
185 Ga0105240_10065032
186 Ga0111539_10159743
187 Ga0105241_10012617
188 Ga0105248_10028941
189 Ga0105237_10000052
190 Ga0105237_10002326
191 Ga0105237_10006624
192 Ga0105237_10008910
193 Ga0105237_10027857
194 Ga0105238_10036473
195 Ga0105239_10002348
196 Ga0105239_10024409
197 Ga0157371_10000081
198 Ga0157371_10003042
199 Ga0157370_10024560
200 Ga0157374_10098899
201 Ga0163162_10002280
202 Ga0163162_10105103
203 Ga0157372_10057061
204 Ga0157375_10000267
205 Ga0157375_10020972
206 Ga0157380_10001771
207 Ga0182006_1000039
208 Ga0163161_10007284
209 Ga0209436_101150
210 Ga0209233_1009302
211 Ga0209758_1001443
212 Ga0207426_1001338
213 Ga0207426_1008243
214 Ga0207705_10018827
215 Ga0207654_10015630
216 Ga0207695_10000117
217 Ga0207695_10000412
218 Ga0207695_10004900
219 Ga0207695_10037418
220 Ga0207695_10081338
221 Ga0207671_10001621
222 Ga0207671_10003402
223 Ga0207671_10015993
224 Ga0207671_10029335
225 Ga0207649_10026857
226 Ga0207650_10012415
227 Ga0207659_10015851
228 Ga0207644_10076216
229 Ga0207669_10093610
230 Ga0207691_10004122
231 Ga0207667_10062867
232 Ga0207702_10000507
233 Ga0207674_10006363
234 Ga0268264_10009702
235 Ga0307517_10006442
236 Ga0265338_10035550
237 Ga0307511_10001102
238 Ga0265327_10000404
239 Ga0307513_10086916
240 Ga0307408_100002427
241 Ga0307408_100026656
242 Ga0307405_10026118
243 Ga0307412_10000034
244 Ga0307412_10000265
245 Ga0307416_100014468
246 Ga0307414_10000067
247 Ga0307414_10016106
248 Ga0395899_0000017
249 Ga0439445_0000109
250 Ga0466972_0000530
251 Ga0466972_0004827
252 Ga0453684_0001989
253 Ga0453684_0007917
254 Ga0453684_0008898
255 Ga0453684_0013670
256 Ga0453684_0021254
257 Ga0453684_0085380
258 Ga0466968_0023101
259 Ga0466957_0011594
260 Ga0451576_0016536
261 Ga0495638_0000003
262 Ga0495606_0023660
263 Ga0495610_0000001
264 Ga0495648_0004362
265 Ga0495621_0001216
266 Ga0495633_0000057
267 Ga0495611_0000179
268 Ga0495687_005055
269 Ga0495686_0000022
270 Ga0495686_0080898
271 Ga0496125_0000645
272 Ga0496125_0080677
273 Ga0501034_0096169
274 Ga0501047_0124977
275 Ga0501083_0020089
276 Ga0501241_000016
277 Ga0501269_000369
278 Ga0501044_0039219
279 Ga0501044_0043499
280 nmdc:mga08y16_136304_c1
281 Ga0500583_0002662
282 Ga0500604_0000801
283 Ga0500616_0000007
284 Ga0500622_0000103
285 Ga0500622_0000181
286 Ga0500622_0004500
287 Ga0501084_0002652
288 2511232830
289 2524004710
290 2585158144
291 2585162349
292 2588212475
293 2588231731
294 2740057016
295 2772606844
296 2775673322
297 2819572573
298 2821140028
299 2904472149
300 2919097431
301 2945927683
302 2946020689
303 2984575478
304 2984608930
305 2993480922
306 8003154312

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07980

SusD_RagB

SusD family

291

572

0.89

PF14322

SusD-like_3

Starch-binding associating with outer membrane

82

246

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
3jys-assembly1.cif.gz_A crystal structure of susd superfamily protein (yp_001298690.1) from bacteroides vulgatus atcc 8482 at 2.00 a resolution 0.8729 40 505
3jys-assembly1.cif.gz_A crystal structure of susd superfamily protein (yp_001298690.1) from bacteroides vulgatus atcc 8482 at 2.00 a resolution 0.8481 40 505
3ckb-assembly1.cif.gz_A b. thetaiotaomicron susd with maltotriose 0.8475 42 505
3ck9-assembly1.cif.gz_A b. thetaiotaomicron susd with maltoheptaose 0.8453 42 505
3ckb-assembly2.cif.gz_B b. thetaiotaomicron susd with maltotriose 0.8402 42 505
ID Description Score Start End Superfamily
3jysA01 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.9198 40 505 1.25.40.390
3jysA01 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.8871 40 505 1.25.40.390
3ck9B01 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.8097 26 505 1.25.40.390
3ck9B01 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.8031 26 505 1.25.40.390
3mcxA01 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.7948 38 243 1.25.40.390
ID Description Score Start End GO Terms
AF-A0A519WWG9-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.9697 39 505 GO:0009279
AF-A0A4Q5YMI5-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.967 143 505 GO:0009279
AF-A0A4Q3EZZ6-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.9636 57 505 GO:0009279
AF-A0A239G5L8-F1-model_v4 Starch-binding associating with outer membrane 0.9608 18 505 GO:0009279
AF-A0A4V1SQ23-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.9598 42 375

Map