F217737

General Info

Members Datasets Scaffolds Average Seq Length
153 115 306 394

Family's Representative Sequence

Representative Sequence 3300044693|Ga0466961_0008505|Ga0466961_0008505_4905_5975
Length 356
Sequence MGDSLSVPWDEALLGYDFGPGHPLAPVRVELTMALARDLGVLDGAGVRRVPVTPADDAALRLIHAPEYIEAVRLADHTTLAEQLLSGIGTPDNPYFPGMHDAAALIAGASIAAAREVWTGASAHAVNVAGGLHHAMRSSASGFCVYNDPAIAIAWLLAQGARRVAYVDVDVHHGDGVQAAFWDDPRVLTISLHEDPGTLLFPGTGYPDETGGPGAEGSAVNVPLPHGTEDAAWLRAFDEAVPPALAAFGPEVLVSQHGCDTHALDPLADLRLSIDGQRAAAERLHRLAHEHAGGKWVATGGGGYALVEVVPRIWTHLLAEASGHPIPPETPTPESWRDLVRRRTGREAPTTMTDAG

Samples

Sample ID Description Type Environment
1 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
5 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
6 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
7 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
8 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
9 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
10 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
11 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
12 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
13 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
14 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
15 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
16 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
17 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
18 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
19 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
20 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
21 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
22 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
23 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
33 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
34 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
35 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
36 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
37 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
38 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
39 3300031889 Wild Oat associated soil bacterial communities from Lone Jack Road, Encinitas, CA, USA - WO Metagenome Rhizosphere
40 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
41 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
42 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
43 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
44 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
45 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
46 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
47 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
48 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
49 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
50 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
51 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
52 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
53 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
54 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
55 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
56 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
57 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
58 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
59 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
60 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
61 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
62 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
63 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
64 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
65 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
66 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
67 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
68 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
69 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
70 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
71 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
72 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
73 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
74 3300053100 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 endosphere Metagenome Endosphere
75 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
76 2515154088 Salinispora arenicola CNT800 Isolate Rhizosphere
77 2515154129 Salinispora pacifica CNS103 Isolate Rhizosphere
78 2515154202 Salinispora pacifica CNT084 Isolate Rhizosphere
79 2515154203 Salinispora arenicola CNR921 Isolate Rhizosphere
80 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
81 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
82 2772190715 Micromonospora chokoriensis NRRL B-24750 Isolate Unclassified
83 2831935698 Jishengella sp. AZ1-13 Isolate Unclassified
84 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
85 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
86 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
87 2855683550 Micromonospora sp. RP3T Isolate Unclassified
88 2856858025 Micromonospora aurantiaca 110B(2018) Isolate Unclassified
89 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
90 2858848962 Micromonospora saelicesensis GAR06 Isolate Unclassified
91 2858868258 Micromonospora sp. MH33 Isolate Unclassified
92 2858882152 Micromonospora noduli MED15 Isolate Nodule
93 2858888857 Micromonospora saelicesensis Lupac 06 Isolate Unclassified
94 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
95 2858902515 Micromonospora sp. MW-13 Isolate Rhizosphere
96 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
97 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
98 2867507094 Micromonospora zingiberis PLAI 1-1 Isolate Unclassified
99 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
100 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
101 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
102 2880495981 Micromonospora vinacea DSM 101695 Isolate Unclassified
103 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
104 2902582711 Micromonospora sp. AP08 Isolate Unclassified
105 2929219909 Micromonospora sp. R-75348 Hybrid assembly Isolate Unclassified
106 2929226422 Micromonospora sp. R-74116 Hybrid assembly Isolate Unclassified
107 2996221748 Micromonospora veneta CAP181 Isolate Unclassified
108 649633069 Micromonospora sp. L5 Isolate Unclassified
109 8001781756 Catellatospora tritici NEAU-YM18 Isolate Rhizosphere
110 8003830390 Micromonospora parastrephiae STR1_7 Isolate Rhizosphere
111 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
112 8003870546 Micromonospora tarensis STR1s_6 Isolate Rhizosphere
113 8054704163 Micromonospora trifolii NIE79 Isolate Nodule
114 8054727385 Micromonospora alfalfae MED01 Isolate Nodule
115 8054734606 Micromonospora hortensis NIE111 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 73.2
Metatranscriptomes 0
Isolates 26.8

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.61
Nodule 3.27
Rhizoplane 5.23
Rhizosphere 59.48
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466961_0008505 3300044693 Bacteria 6537
2 rootL2_10041699 3300003322 Bacteria 3341
3 Ga0070683_100131886 3300005329 Bacteria 2365
4 Ga0070668_100010458 3300005347 Bacteria 6897
5 Ga0070668_100118614 3300005347 Bacteria 2112
6 Ga0070667_100269658 3300005367 Bacteria 1526
7 Ga0070685_10086439 3300005466 Bacteria 1891
8 Ga0070684_100041323 3300005535 Bacteria 3975
9 Ga0070665_100039334 3300005548 Bacteria 4755
10 Ga0070664_100088780 3300005564 Bacteria 2673
11 Ga0068864_100027945 3300005618 Bacteria 4767
12 Ga0068864_100053578 3300005618 Bacteria 3481
13 Ga0068863_100009824 3300005841 Bacteria 9322
14 Ga0068863_100018897 3300005841 Bacteria 6595
15 Ga0068860_100331474 3300005843 Bacteria 1495
16 Ga0068862_100173545 3300005844 Bacteria 1931
17 Ga0081455_10000671 3300005937 Bacteria 44288
18 Ga0081539_10000168 3300005985 Bacteria 153724
19 Ga0081539_10000536 3300005985 Bacteria 78807
20 Ga0081539_10000709 3300005985 Bacteria 66741
21 Ga0081539_10003417 3300005985 Bacteria 19544
22 Ga0081539_10019247 3300005985 Bacteria 4683
23 Ga0075428_100000057 3300006844 Bacteria 89665
24 Ga0075428_100000807 3300006844 Bacteria 32731
25 Ga0075428_100085161 3300006844 Bacteria 3447
26 Ga0075430_100012123 3300006846 Bacteria 7341
27 Ga0075430_100022154 3300006846 Bacteria 5401
28 Ga0075429_100099482 3300006880 Bacteria 2537
29 Ga0114129_10000024 3300009147 Bacteria 116794
30 Ga0114129_10009483 3300009147 Bacteria 13876
31 Ga0114129_10350311 3300009147 Bacteria 1956
32 Ga0114129_10355915 3300009147 Bacteria 1938
33 Ga0105248_10040275 3300009177 Bacteria 5237
34 Ga0163163_10005619 3300014325 Bacteria 10865
35 Ga0163163_10063820 3300014325 Bacteria 3654
36 Ga0163163_10083092 3300014325 Bacteria 3207
37 Ga0163163_10607641 3300014325 Bacteria 1157
38 Ga0157379_10145842 3300014968 Bacteria 2135
39 Ga0207693_10020615 3300025915 Bacteria 5241
40 Ga0207661_10014647 3300025944 Bacteria 5751
41 Ga0207679_10057737 3300025945 Bacteria 2872
42 Ga0207668_10025066 3300025972 Bacteria 3855
43 Ga0207641_10106833 3300026088 Bacteria 2475
44 Ga0207641_10297500 3300026088 Bacteria 1523
45 Ga0207676_10054258 3300026095 Bacteria 3140
46 Ga0207676_10068885 3300026095 Bacteria 2832
47 Ga0207674_10275121 3300026116 Bacteria 1631
48 Ga0268266_10041533 3300028379 Bacteria 3925
49 Ga0268265_10105803 3300028380 Bacteria 2284
50 Ga0307515_10000241 3300028794 Bacteria 135591
51 Ga0307515_10002981 3300028794 Bacteria 35943
52 Ga0307515_10043558 3300028794 Bacteria 6970
53 Ga0307512_10003152 3300030522 Bacteria 19595
54 Ga0307512_10006215 3300030522 Bacteria 12171
55 Ga0307513_10007773 3300031456 Bacteria 13836
56 Ga0307513_10020898 3300031456 Bacteria 7745
57 Ga0307513_10040434 3300031456 Bacteria 5156
58 Ga0307513_10109374 3300031456 Bacteria 2762
59 Ga0307509_10092163 3300031507 Bacteria 3099
60 Ga0307508_10001698 3300031616 Bacteria 24436
61 Ga0307508_10014255 3300031616 Bacteria 7250
62 Ga0307508_10026635 3300031616 Bacteria 5239
63 Ga0307516_10013193 3300031730 Bacteria 8824
64 Ga0307516_10017972 3300031730 Bacteria 7357
65 Ga0307516_10034862 3300031730 Bacteria 5053
66 Ga0307516_10077699 3300031730 Bacteria 3167
67 Ga0307413_10030269 3300031824 Bacteria 3040
68 Ga0307413_10092909 3300031824 Bacteria 1970
69 Ga0326468_10000349 3300031889 Bacteria 4900
70 Ga0307412_10145578 3300031911 Bacteria 1741
71 Ga0307416_100218508 3300032002 Bacteria 1825
72 Ga0307415_100062729 3300032126 Bacteria 2579
73 Ga0307507_10064014 3300033179 Bacteria 3398
74 Ga0307507_10157992 3300033179 Bacteria 1684
75 Ga0373940_0022846 3300035088 Bacteria 1610
76 Ga0373951_0000082 3300035091 Bacteria 37430
77 Ga0373953_0050053 3300035117 Bacteria 1687
78 Ga0373942_0000346 3300035207 Bacteria 12686
79 Ga0373962_0000467 3300035242 Bacteria 8938
80 Ga0373935_0007985 3300035692 Bacteria 6345
81 Ga0395898_0017719 3300037466 Bacteria 7268
82 Ga0395905_0013660 3300037471 Bacteria 7777
83 Ga0466967_0068974 3300045976 Bacteria 3159
84 Ga0495606_0001763 3300046507 Bacteria 27726
85 Ga0495668_0000103 3300046616 Bacteria 135853
86 Ga0495626_0001237 3300048091 Bacteria 21007
87 Ga0496104_0002093 3300048907 Bacteria 17324
88 Ga0496108_0000028 3300048911 Bacteria 168580
89 Ga0496109_0034557 3300048912 Bacteria 4554
90 Ga0496110_0017862 3300048913 Bacteria 5938
91 Ga0496111_0016747 3300048914 Bacteria 5057
92 Ga0496112_0040596 3300048915 Bacteria 4550
93 Ga0496112_0062927 3300048915 Bacteria 3660
94 Ga0496113_0034236 3300048916 Bacteria 3704
95 Ga0496126_0175524 3300048929 Bacteria 1823
96 Ga0501032_0107894 3300049569 Bacteria 1844
97 Ga0501047_0213931 3300049581 Bacteria 1785
98 Ga0501080_0090226 3300049742 Bacteria 2847
99 nmdc:mga05p37_168334_c1 3300050507 Bacteria 2674
100 nmdc:mga05p37_24_c1 3300050507 Bacteria 118187
101 nmdc:mga05p37_271854_c1 3300050507 Bacteria 2024
102 nmdc:mga09592_2_c1 3300050508 Bacteria 168133
103 nmdc:mga0qj67_10_c1 3300050509 Bacteria 83362
104 nmdc:mga0qj67_2612_c1 3300050509 Bacteria 12907
105 nmdc:mga06r32_15876_c1 3300050510 Bacteria 6852
106 nmdc:mga06r32_343_c1 3300050510 Bacteria 38821
107 nmdc:mga06r32_6136_c1 3300050510 Bacteria 10787
108 Ga0495619_0029064 3300053085 Bacteria 3570
109 Ga0500646_0000054 3300053090 Bacteria 31482
110 Ga0500651_0061393 3300053093 Bacteria 2348
111 Ga0500660_063779 3300053100 Bacteria 1760
112 Ga0500594_0006725 3300053118 Bacteria 2589
113 2515494180 2515154088 Bacteria 5526283
114 2515721979 2515154129 Bacteria 5584369
115 2516085623 2515154202 Bacteria 5471270
116 2516090572 2515154203 Bacteria 5458536
117 2676482057 2675903059 Bacteria 8644972
118 2753262504 2751185782 Bacteria 11227053
119 2772644655 2772190715 Bacteria 6959372
120 2831938044 2831935698 Bacteria 5963223
121 2832007652 2832004796 Bacteria 6538017
122 2855676764 2855670206 Bacteria 7120389
123 2855682931 2855676851 Bacteria 7063653
124 2855686045 2855683550 Bacteria 7134265
125 2856861235 2856858025 Bacteria 7255264
126 2857295596 2857288857 Bacteria 7189066
127 2858853466 2858848962 Bacteria 6963058
128 2858869290 2858868258 Bacteria 7683772
129 2858885339 2858882152 Bacteria 7230291
130 2858893414 2858888857 Bacteria 7060307
131 2858896508 2858895516 Bacteria 7378898
132 2858903941 2858902515 Bacteria 7086037
133 2866065429 2866065130 Bacteria 6518152
134 2867308103 2867302475 Bacteria 7087181
135 2867507884 2867507094 Bacteria 6506033
136 2869062796 2869061728 Bacteria 7112407
137 2869072317 2869068681 Bacteria 7205615
138 2880492870 2880489317 Bacteria 7096270
139 2880499441 2880495981 Bacteria 7340502
140 2887481864 2887478801 Bacteria 8972725
141 2902587835 2902582711 Bacteria 6187705
142 2929221413 2929219909 Bacteria 6984360
143 2929228044 2929226422 Bacteria 7248583
144 2996226758 2996221748 Bacteria 6799777
145 649811990 649633069 Bacteria 6962533
146 8001781758 8001781756 Bacteria 9586736
147 8001788885 8001781756 Bacteria 9586736
148 8003831533 8003830390 Bacteria 6541657
149 8003858831 8003856774 Bacteria 7675274
150 8003873940 8003870546 Bacteria 7396674
151 8054709143 8054704163 Bacteria 7247792
152 8054732090 8054727385 Bacteria 7558670
153 8054741040 8054734606 Bacteria 6947278
154 Ga0466961_0008505
155 rootL2_10041699
156 Ga0070683_100131886
157 Ga0070668_100010458
158 Ga0070668_100118614
159 Ga0070667_100269658
160 Ga0070685_10086439
161 Ga0070684_100041323
162 Ga0070665_100039334
163 Ga0070664_100088780
164 Ga0068864_100027945
165 Ga0068864_100053578
166 Ga0068863_100009824
167 Ga0068863_100018897
168 Ga0068860_100331474
169 Ga0068862_100173545
170 Ga0081455_10000671
171 Ga0081539_10000168
172 Ga0081539_10000536
173 Ga0081539_10000709
174 Ga0081539_10003417
175 Ga0081539_10019247
176 Ga0075428_100000057
177 Ga0075428_100000807
178 Ga0075428_100085161
179 Ga0075430_100012123
180 Ga0075430_100022154
181 Ga0075429_100099482
182 Ga0114129_10000024
183 Ga0114129_10009483
184 Ga0114129_10350311
185 Ga0114129_10355915
186 Ga0105248_10040275
187 Ga0163163_10005619
188 Ga0163163_10063820
189 Ga0163163_10083092
190 Ga0163163_10607641
191 Ga0157379_10145842
192 Ga0207693_10020615
193 Ga0207661_10014647
194 Ga0207679_10057737
195 Ga0207668_10025066
196 Ga0207641_10106833
197 Ga0207641_10297500
198 Ga0207676_10054258
199 Ga0207676_10068885
200 Ga0207674_10275121
201 Ga0268266_10041533
202 Ga0268265_10105803
203 Ga0307515_10000241
204 Ga0307515_10002981
205 Ga0307515_10043558
206 Ga0307512_10003152
207 Ga0307512_10006215
208 Ga0307513_10007773
209 Ga0307513_10020898
210 Ga0307513_10040434
211 Ga0307513_10109374
212 Ga0307509_10092163
213 Ga0307508_10001698
214 Ga0307508_10014255
215 Ga0307508_10026635
216 Ga0307516_10013193
217 Ga0307516_10017972
218 Ga0307516_10034862
219 Ga0307516_10077699
220 Ga0307413_10030269
221 Ga0307413_10092909
222 Ga0326468_10000349
223 Ga0307412_10145578
224 Ga0307416_100218508
225 Ga0307415_100062729
226 Ga0307507_10064014
227 Ga0307507_10157992
228 Ga0373940_0022846
229 Ga0373951_0000082
230 Ga0373953_0050053
231 Ga0373942_0000346
232 Ga0373962_0000467
233 Ga0373935_0007985
234 Ga0395898_0017719
235 Ga0395905_0013660
236 Ga0466967_0068974
237 Ga0495606_0001763
238 Ga0495668_0000103
239 Ga0495626_0001237
240 Ga0496104_0002093
241 Ga0496108_0000028
242 Ga0496109_0034557
243 Ga0496110_0017862
244 Ga0496111_0016747
245 Ga0496112_0040596
246 Ga0496112_0062927
247 Ga0496113_0034236
248 Ga0496126_0175524
249 Ga0501032_0107894
250 Ga0501047_0213931
251 Ga0501080_0090226
252 nmdc:mga05p37_168334_c1
253 nmdc:mga05p37_24_c1
254 nmdc:mga05p37_271854_c1
255 nmdc:mga09592_2_c1
256 nmdc:mga0qj67_10_c1
257 nmdc:mga0qj67_2612_c1
258 nmdc:mga06r32_15876_c1
259 nmdc:mga06r32_343_c1
260 nmdc:mga06r32_6136_c1
261 Ga0495619_0029064
262 Ga0500646_0000054
263 Ga0500651_0061393
264 Ga0500660_063779
265 Ga0500594_0006725
266 2515494180
267 2515721979
268 2516085623
269 2516090572
270 2676482057
271 2753262504
272 2772644655
273 2831938044
274 2832007652
275 2855676764
276 2855682931
277 2855686045
278 2856861235
279 2857295596
280 2858853466
281 2858869290
282 2858885339
283 2858893414
284 2858896508
285 2858903941
286 2866065429
287 2867308103
288 2867507884
289 2869062796
290 2869072317
291 2880492870
292 2880499441
293 2887481864
294 2902587835
295 2929221413
296 2929228044
297 2996226758
298 649811990
299 8001781758
300 8001788885
301 8003831533
302 8003858831
303 8003873940
304 8054709143
305 8054732090
306 8054741040

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00850

Hist_deacetyl

Histone deacetylase domain

22

321

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
8szt-assembly1.cif.gz_A structure of kdac1 from acinetobacter baumannii 0.9144 5 324
3mz4-assembly2.cif.gz_B crystal structure of d101l mn2+ hdac8 complexed with m344 0.9061 5 381
2v5x-assembly2.cif.gz_B crystal structure of hdac8-inhibitor complex 0.9053 5 381
5bwz-assembly2.cif.gz_B crystal structure of s39e hdac8 in complex with droxinostat 0.9045 5 381
5fcw-assembly2.cif.gz_B hdac8 complexed with a hydroxamic acid 0.904 5 381
ID Description Score Start End Superfamily
af_A0A1D6N7T5_1_214_3.40.800.20 Alpha Beta;3-Layer(aba) Sandwich;Arginase; Chain A;Histone deacetylase domain 0.9248 139 318 3.40.800.20
af_Q2G292_6_379_3.40.800.20 Alpha Beta;3-Layer(aba) Sandwich;Arginase; Chain A;Histone deacetylase domain 0.9044 5 381 3.40.800.20
af_A4I0X6_83_423_3.40.800.20 Alpha Beta;3-Layer(aba) Sandwich;Arginase; Chain A;Histone deacetylase domain 0.897 4 321 3.40.800.20
5ji5A00 Alpha Beta;3-Layer(aba) Sandwich;Arginase; Chain A;Histone deacetylase domain 0.8958 5 320 3.40.800.20
af_Q2G292_6_379_3.40.800.20 Alpha Beta;3-Layer(aba) Sandwich;Arginase; Chain A;Histone deacetylase domain 0.8951 5 381 3.40.800.20
ID Description Score Start End GO Terms
AF-A0A810MJD7-F1-model_v4 deleted 0.9802 1 185
AF-A0A6B3E8L2-F1-model_v4 Acetoin utilization protein AcuC 0.9742 237 348
AF-A0A154MJK7-F1-model_v4 Acetoin utilization protein AcuC 0.9737 4 394 GO:0004407
GO:0040029
GO:0045150
AF-A0A4Q8AY49-F1-model_v4 deleted 0.973 1 394
AF-A0A2T4S5V8-F1-model_v4 Acetoin utilization protein AcuC 0.971 91 273 GO:0004407
GO:0040029

Map