F217576

General Info

Members Datasets Scaffolds Average Seq Length
153 102 152 146

Family's Representative Sequence

Representative Sequence 3300037471|Ga0395905_0269156|Ga0395905_0269156_838_1293
Length 151
Sequence MAEVLFYHLENQPLERVLPVLLERTLERGWKAIVETSSAERAAALDALLWTFRDDSFLPHGIAGDTETDPRQPVLIVMDDGNANGASVRFFVDRTVPQSGKGYERIVYLFSGHDPDAVTEARISWRTLLDEGGNVLTYWQQDEGGRWVKRG

Samples

Sample ID Description Type Environment
1 2643221591 Devosia sp. Root685 Isolate Unclassified
2 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
14 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
15 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
20 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
21 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
22 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
23 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
24 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
25 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
26 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
27 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
28 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
29 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
30 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
31 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
32 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
33 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
34 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300027378 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes) (version 2) Metagenome Rhizosphere
51 3300027543 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes) (version 2) Metagenome Rhizosphere
52 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
53 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
55 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
56 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
57 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
58 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
59 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
60 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
61 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
62 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
63 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
64 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
65 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
66 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
67 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
68 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
69 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
70 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
71 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
72 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
73 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
74 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
75 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
76 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
77 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
78 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
80 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
86 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
87 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
88 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
89 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
90 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
91 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
94 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
95 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
96 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
97 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
98 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
99 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
100 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
101 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
102 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.35
Metatranscriptomes 0
Isolates 0.65

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.46
Nodule 0
Rhizoplane 1.31
Rhizosphere 83.01
Stem 0
Stem Tuber 0
Unclassified 5.23

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25165J46597_1002134 3300003214 Bacteria 7125
2 rootH1_10129262 3300003323 Bacteria 1137
3 Ga0070658_10321521 3300005327 Bacteria 1321
4 Ga0068869_100024255 3300005334 Bacteria 4200
5 Ga0070660_100003495 3300005339 Bacteria 10826
6 Ga0070661_100029577 3300005344 Bacteria 3955
7 Ga0070661_100152973 3300005344 Bacteria 1745
8 Ga0070661_100267877 3300005344 Bacteria 1322
9 Ga0070668_101549558 3300005347 Unclassified 606
10 Ga0070669_101130171 3300005353 Bacteria 675
11 Ga0070667_100188173 3300005367 Bacteria 1828
12 Ga0070663_100167207 3300005455 Bacteria 1697
13 Ga0070663_100428732 3300005455 Bacteria 1086
14 Ga0070679_100153377 3300005530 Bacteria 2280
15 Ga0070679_100965127 3300005530 Bacteria 796
16 Ga0068853_100020479 3300005539 Bacteria 5501
17 Ga0070672_100048854 3300005543 Bacteria 3289
18 Ga0070665_100003577 3300005548 Bacteria 16470
19 Ga0068855_100021211 3300005563 Bacteria 7789
20 Ga0068855_100067239 3300005563 Bacteria 4176
21 Ga0068855_100290210 3300005563 Bacteria 1814
22 Ga0068856_100377426 3300005614 Bacteria 1437
23 Ga0068856_100525997 3300005614 Bacteria 1204
24 Ga0068852_100043806 3300005616 Bacteria 3797
25 Ga0068852_100607878 3300005616 Bacteria 1098
26 Ga0068858_100000031 3300005842 Bacteria 143397
27 Ga0075362_10005689 3300006177 Bacteria 4586
28 Ga0068871_101435930 3300006358 Bacteria 651
29 Ga0105240_10427792 3300009093 Bacteria 1486
30 Ga0105240_10635786 3300009093 Bacteria 1171
31 Ga0105240_10666077 3300009093 Bacteria 1139
32 Ga0105240_11154420 3300009093 Bacteria 822
33 Ga0105237_10001366 3300009545 Bacteria 32234
34 Ga0105238_10124158 3300009551 Bacteria 2561
35 Ga0105238_10125878 3300009551 Bacteria 2541
36 Ga0105239_10006723 3300010375 Bacteria 13285
37 Ga0157371_10047183 3300013102 Bacteria 3062
38 Ga0157370_10209956 3300013104 Bacteria 1805
39 Ga0157370_10988510 3300013104 Bacteria 762
40 Ga0157370_11164911 3300013104 Bacteria 696
41 Ga0157369_10014955 3300013105 Bacteria 8759
42 Ga0157369_10843786 3300013105 Bacteria 941
43 Ga0157369_11313316 3300013105 Bacteria 737
44 Ga0157369_11982327 3300013105 Bacteria 591
45 Ga0157378_11016171 3300013297 Bacteria 864
46 Ga0163163_10105175 3300014325 Bacteria 2848
47 Ga0163163_10711761 3300014325 Bacteria 1068
48 Ga0157376_10773974 3300014969 Bacteria 971
49 Ga0207427_109191 3300025231 Bacteria 1073
50 Ga0209233_1000897 3300025261 Bacteria 13005
51 Ga0207705_10011631 3300025909 Bacteria 6360
52 Ga0207705_10290176 3300025909 Bacteria 1253
53 Ga0207695_10558374 3300025913 Bacteria 1026
54 Ga0207671_10000215 3300025914 Bacteria 87204
55 Ga0207657_10002651 3300025919 Bacteria 19319
56 Ga0207657_10023927 3300025919 Bacteria 5672
57 Ga0207649_10285077 3300025920 Bacteria 1202
58 Ga0207649_11477178 3300025920 Bacteria 538
59 Ga0207652_10608592 3300025921 Bacteria 979
60 Ga0207694_10125183 3300025924 Bacteria 2055
61 Ga0207694_10171740 3300025924 Bacteria 1756
62 Ga0207689_10061058 3300025942 Bacteria 3100
63 Ga0207667_10031882 3300025949 Bacteria 5683
64 Ga0207667_10306293 3300025949 Bacteria 1623
65 Ga0207667_11080813 3300025949 Bacteria 786
66 Ga0207640_10473669 3300025981 Bacteria 1037
67 Ga0207658_10257776 3300025986 Bacteria 1485
68 Ga0207703_10000038 3300026035 Bacteria 175917
69 Ga0207639_10010321 3300026041 Bacteria 6466
70 Ga0207639_10311699 3300026041 Bacteria 1394
71 Ga0207678_10091293 3300026067 Bacteria 2603
72 Ga0207702_10366283 3300026078 Bacteria 1382
73 Ga0207698_11390869 3300026142 Bacteria 717
74 Ga0209981_1000518 3300027378 Bacteria 4909
75 Ga0209999_1000667 3300027543 Bacteria 5533
76 Ga0209983_1016728 3300027665 Bacteria 1516
77 Ga0268266_10000255 3300028379 Bacteria 89930
78 Ga0265319_1083761 3300028563 Bacteria 1011
79 Ga0265318_10007566 3300028577 Bacteria 4898
80 Ga0265327_10039550 3300031251 Bacteria 2560
81 Ga0265316_10716068 3300031344 Bacteria 705
82 Ga0307412_10498499 3300031911 Bacteria 1013
83 Ga0307414_10082672 3300032004 Bacteria 2355
84 Ga0307414_10128722 3300032004 Bacteria 1961
85 Ga0307414_10345453 3300032004 Bacteria 1275
86 Ga0307414_10481939 3300032004 Bacteria 1094
87 Ga0307414_10669215 3300032004 Bacteria 937
88 Ga0307414_10722383 3300032004 Bacteria 903
89 Ga0307414_10734928 3300032004 Bacteria 896
90 Ga0307411_10577742 3300032005 Bacteria 963
91 Ga0395899_0147658 3300037312 Bacteria 1668
92 Ga0395900_0441672 3300037418 Bacteria 1258
93 Ga0395898_0784801 3300037466 Bacteria 893
94 Ga0395905_0269156 3300037471 Bacteria 1590
95 Ga0395905_0346241 3300037471 Bacteria 1378
96 Ga0395905_1700681 3300037471 Unclassified 536
97 Ga0436364_0958791 3300037853 Bacteria 917
98 Ga0395901_0335787 3300038443 Bacteria 1562
99 Ga0439461_0054073 3300041410 Bacteria 897
100 Ga0439465_0112659 3300041413 Bacteria 948
101 Ga0451807_0311086 3300041486 Bacteria 576
102 Ga0451807_1496308 3300041486 Bacteria 623
103 Ga0495585_0262297 3300046492 Bacteria 859
104 Ga0495630_0339107 3300046517 Bacteria 1150
105 Ga0495668_0761755 3300046616 Bacteria 536
106 Ga0495672_0146092 3300047320 Bacteria 1230
107 Ga0496117_0220535 3300048920 Bacteria 1056
108 Ga0496122_0155079 3300048925 Bacteria 1407
109 Ga0496124_0352675 3300048927 Bacteria 1040
110 Ga0496125_0001281 3300048928 Bacteria 37316
111 Ga0496125_0419327 3300048928 Bacteria 776
112 Ga0501031_0951304 3300049568 Bacteria 549
113 Ga0501033_0023637 3300049570 Bacteria 4635
114 Ga0501034_0002509 3300049571 Bacteria 22038
115 Ga0501034_0048467 3300049571 Bacteria 4287
116 Ga0501034_0462380 3300049571 Bacteria 1185
117 Ga0501034_0702516 3300049571 Bacteria 910
118 Ga0501034_0904173 3300049571 Bacteria 770
119 Ga0501036_0067611 3300049572 Bacteria 3023
120 Ga0501036_0555484 3300049572 Bacteria 954
121 Ga0501037_0063489 3300049573 Bacteria 2692
122 Ga0501038_0037671 3300049574 Bacteria 4239
123 Ga0501038_0561496 3300049574 Bacteria 867
124 Ga0501043_0296099 3300049579 Bacteria 1238
125 Ga0501043_0550848 3300049579 Bacteria 857
126 Ga0501047_0217983 3300049581 Bacteria 1765
127 Ga0501047_0339374 3300049581 Bacteria 1340
128 Ga0501047_0551861 3300049581 Bacteria 976
129 Ga0501047_0663243 3300049581 Bacteria 862
130 Ga0501070_0093068 3300049586 Bacteria 2494
131 Ga0501073_1241244 3300049589 Bacteria 511
132 Ga0501074_0446971 3300049590 Bacteria 917
133 Ga0501079_0404529 3300049741 Bacteria 1071
134 Ga0501083_0357485 3300049744 Bacteria 950
135 Ga0501035_0073075 3300049822 Bacteria 3034
136 Ga0501035_0257705 3300049822 Bacteria 1479
137 Ga0501044_0012587 3300049823 Bacteria 9162
138 Ga0501044_0616900 3300049823 Bacteria 976
139 Ga0501044_0879424 3300049823 Bacteria 772
140 Ga0501045_0248368 3300049824 Bacteria 1325
141 nmdc:mga03683_2742_c1 3300050489 Bacteria 5524
142 nmdc:mga00v17_399480_c1 3300050491 Bacteria 893
143 nmdc:mga00v17_838530_c1 3300050491 Bacteria 584
144 Ga0500650_0253006 3300053098 Bacteria 790
145 Ga0500562_000864 3300053108 Bacteria 7353
146 Ga0500595_043657 3300053119 Bacteria 1426
147 Ga0500595_134240 3300053119 Bacteria 696
148 Ga0500604_0000468 3300053151 Bacteria 11143
149 Ga0500616_0026282 3300053153 Bacteria 3223
150 Ga0500634_0000087 3300053161 Bacteria 35438
151 Ga0500634_0182862 3300053161 Bacteria 941
152 Ga0500661_089298 3300055283 Bacteria 577

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005543 Ga0070672_100048854 Ga0070672_1000488543 129
2 3300003323 rootH1_10129262 rootH1_101292622 132
3 3300005327 Ga0070658_10321521 Ga0070658_103215213 132
4 3300005344 Ga0070661_100029577 Ga0070661_1000295774 132
5 3300005344 Ga0070661_100152973 Ga0070661_1001529732 132
6 3300005455 Ga0070663_100428732 Ga0070663_1004287321 132
7 3300005563 Ga0068855_100290210 Ga0068855_1002902103 132
8 3300005614 Ga0068856_100525997 Ga0068856_1005259973 132
9 3300005616 Ga0068852_100043806 Ga0068852_1000438063 132
10 3300009093 Ga0105240_10427792 Ga0105240_104277922 132
11 3300009551 Ga0105238_10124158 Ga0105238_101241583 132
12 3300013102 Ga0157371_10047183 Ga0157371_100471834 132
13 3300013104 Ga0157370_10209956 Ga0157370_102099562 132
14 3300013105 Ga0157369_10014955 Ga0157369_1001495512 132
15 3300013105 Ga0157369_10843786 Ga0157369_108437862 132
16 3300025909 Ga0207705_10290176 Ga0207705_102901763 132
17 3300025919 Ga0207657_10023927 Ga0207657_100239276 132
18 3300025920 Ga0207649_10285077 Ga0207649_102850773 132
19 3300025924 Ga0207694_10125183 Ga0207694_101251833 132
20 3300025949 Ga0207667_10031882 Ga0207667_100318826 132
21 3300025949 Ga0207667_11080813 Ga0207667_110808132 132
22 3300026041 Ga0207639_10311699 Ga0207639_103116992 132
23 3300026067 Ga0207678_10091293 Ga0207678_100912933 132
24 3300037312 Ga0395899_0147658 Ga0395899_0147658_1081_1479 132
25 3300037418 Ga0395900_0441672 Ga0395900_0441672_127_525 132
26 3300053153 Ga0500616_0026282 Ga0500616_0026282_2290_2736 133
27 3300037853 Ga0436364_0958791 Ga0436364_0958791_347_811 135
28 3300053098 Ga0500650_0253006 Ga0500650_0253006_341_778 135
29 iso_pu_bacteria 2643221591 2643964086 144
30 3300005334 Ga0068869_100024255 Ga0068869_1000242553 147
31 3300005353 Ga0070669_101130171 Ga0070669_1011301711 147
32 3300005563 Ga0068855_100021211 Ga0068855_1000212113 147
33 3300005842 Ga0068858_100000031 Ga0068858_100000031135 147
34 3300009093 Ga0105240_10666077 Ga0105240_106660772 147
35 3300014325 Ga0163163_10105175 Ga0163163_101051753 147
36 3300014325 Ga0163163_10711761 Ga0163163_107117612 147
37 3300025913 Ga0207695_10558374 Ga0207695_105583741 147
38 3300025942 Ga0207689_10061058 Ga0207689_100610583 147
39 3300026035 Ga0207703_10000038 Ga0207703_1000003853 147
40 3300027378 Ga0209981_1000518 Ga0209981_10005184 147
41 3300027543 Ga0209999_1000667 Ga0209999_10006675 147
42 3300027665 Ga0209983_1016728 Ga0209983_10167282 147
43 3300031251 Ga0265327_10039550 Ga0265327_100395503 147
44 3300037471 Ga0395905_0346241 Ga0395905_0346241_897_1367 147
45 3300037471 Ga0395905_1700681 Ga0395905_1700681_56_514 147
46 3300046492 Ga0495585_0262297 Ga0495585_0262297_49_504 147
47 3300046517 Ga0495630_0339107 Ga0495630_0339107_591_1073 147
48 3300046616 Ga0495668_0761755 Ga0495668_0761755_40_495 147
49 3300047320 Ga0495672_0146092 Ga0495672_0146092_275_733 147
50 3300049570 Ga0501033_0023637 Ga0501033_0023637_2696_3154 147
51 3300049571 Ga0501034_0048467 Ga0501034_0048467_1746_2204 147
52 3300049571 Ga0501034_0702516 Ga0501034_0702516_337_792 147
53 3300049573 Ga0501037_0063489 Ga0501037_0063489_1709_2167 147
54 3300049579 Ga0501043_0550848 Ga0501043_0550848_52_507 147
55 3300049581 Ga0501047_0339374 Ga0501047_0339374_630_1085 147
56 3300049581 Ga0501047_0663243 Ga0501047_0663243_55_504 147
57 3300049589 Ga0501073_1241244 Ga0501073_1241244_25_480 147
58 3300049823 Ga0501044_0012587 Ga0501044_0012587_6828_7286 147
59 3300053108 Ga0500562_000864 Ga0500562_000864_5495_5944 147
60 3300053119 Ga0500595_134240 Ga0500595_134240_70_528 147
61 3300003214 JGI25165J46597_1002134 JGI25165J46597_10021343 148
62 3300005339 Ga0070660_100003495 Ga0070660_1000034952 148
63 3300005344 Ga0070661_100267877 Ga0070661_1002678771 148
64 3300005347 Ga0070668_101549558 Ga0070668_1015495581 148
65 3300005367 Ga0070667_100188173 Ga0070667_1001881732 148
66 3300005455 Ga0070663_100167207 Ga0070663_1001672072 148
67 3300005530 Ga0070679_100153377 Ga0070679_1001533772 148
68 3300005530 Ga0070679_100965127 Ga0070679_1009651272 148
69 3300005539 Ga0068853_100020479 Ga0068853_1000204794 148
70 3300005548 Ga0070665_100003577 Ga0070665_1000035775 148
71 3300005563 Ga0068855_100067239 Ga0068855_1000672392 148
72 3300005614 Ga0068856_100377426 Ga0068856_1003774262 148
73 3300005616 Ga0068852_100607878 Ga0068852_1006078782 148
74 3300006177 Ga0075362_10005689 Ga0075362_100056893 148
75 3300006358 Ga0068871_101435930 Ga0068871_1014359301 148
76 3300009093 Ga0105240_10635786 Ga0105240_106357862 148
77 3300009093 Ga0105240_11154420 Ga0105240_111544201 148
78 3300009545 Ga0105237_10001366 Ga0105237_1000136613 148
79 3300009551 Ga0105238_10125878 Ga0105238_101258782 148
80 3300010375 Ga0105239_10006723 Ga0105239_1000672310 148
81 3300013104 Ga0157370_10988510 Ga0157370_109885102 148
82 3300013104 Ga0157370_11164911 Ga0157370_111649111 148
83 3300013105 Ga0157369_11313316 Ga0157369_113133162 148
84 3300013105 Ga0157369_11982327 Ga0157369_119823271 148
85 3300013297 Ga0157378_11016171 Ga0157378_110161712 148
86 3300014969 Ga0157376_10773974 Ga0157376_107739742 148
87 3300025231 Ga0207427_109191 Ga0207427_1091911 148
88 3300025261 Ga0209233_1000897 Ga0209233_10008973 148
89 3300025909 Ga0207705_10011631 Ga0207705_100116314 148
90 3300025914 Ga0207671_10000215 Ga0207671_1000021516 148
91 3300025919 Ga0207657_10002651 Ga0207657_1000265116 148
92 3300025920 Ga0207649_11477178 Ga0207649_114771781 148
93 3300025921 Ga0207652_10608592 Ga0207652_106085922 148
94 3300025924 Ga0207694_10171740 Ga0207694_101717402 148
95 3300025949 Ga0207667_10306293 Ga0207667_103062932 148
96 3300025981 Ga0207640_10473669 Ga0207640_104736692 148
97 3300025986 Ga0207658_10257776 Ga0207658_102577762 148
98 3300026041 Ga0207639_10010321 Ga0207639_100103217 148
99 3300026078 Ga0207702_10366283 Ga0207702_103662832 148
100 3300026142 Ga0207698_11390869 Ga0207698_113908692 148
101 3300028379 Ga0268266_10000255 Ga0268266_1000025552 148
102 3300028563 Ga0265319_1083761 Ga0265319_10837612 148
103 3300028577 Ga0265318_10007566 Ga0265318_100075665 148
104 3300031344 Ga0265316_10716068 Ga0265316_107160682 148
105 3300031911 Ga0307412_10498499 Ga0307412_104984992 148
106 3300032004 Ga0307414_10082672 Ga0307414_100826723 148
107 3300032004 Ga0307414_10128722 Ga0307414_101287222 148
108 3300032004 Ga0307414_10345453 Ga0307414_103454532 148
109 3300032004 Ga0307414_10481939 Ga0307414_104819392 148
110 3300032004 Ga0307414_10669215 Ga0307414_106692152 148
111 3300032004 Ga0307414_10722383 Ga0307414_107223832 148
112 3300032004 Ga0307414_10734928 Ga0307414_107349282 148
113 3300032005 Ga0307411_10577742 Ga0307411_105777422 148
114 3300037466 Ga0395898_0784801 Ga0395898_0784801_397_843 148
115 3300037471 Ga0395905_0269156 Ga0395905_0269156_838_1293 148
116 3300038443 Ga0395901_0335787 Ga0395901_0335787_260_706 148
117 3300041410 Ga0439461_0054073 Ga0439461_0054073_10_462 148
118 3300041413 Ga0439465_0112659 Ga0439465_0112659_237_683 148
119 3300041486 Ga0451807_0311086 Ga0451807_0311086_43_489 148
120 3300041486 Ga0451807_1496308 Ga0451807_1496308_150_611 148
121 3300048920 Ga0496117_0220535 Ga0496117_0220535_561_1007 148
122 3300048925 Ga0496122_0155079 Ga0496122_0155079_753_1199 148
123 3300048927 Ga0496124_0352675 Ga0496124_0352675_100_546 148
124 3300048928 Ga0496125_0001281 Ga0496125_0001281_17653_18099 148
125 3300048928 Ga0496125_0419327 Ga0496125_0419327_153_599 148
126 3300049568 Ga0501031_0951304 Ga0501031_0951304_79_525 148
127 3300049571 Ga0501034_0002509 Ga0501034_0002509_4303_4749 148
128 3300049571 Ga0501034_0462380 Ga0501034_0462380_482_934 148
129 3300049571 Ga0501034_0904173 Ga0501034_0904173_224_670 148
130 3300049572 Ga0501036_0067611 Ga0501036_0067611_2226_2672 148
131 3300049572 Ga0501036_0555484 Ga0501036_0555484_353_799 148
132 3300049574 Ga0501038_0037671 Ga0501038_0037671_1508_1954 148
133 3300049574 Ga0501038_0561496 Ga0501038_0561496_304_750 148
134 3300049579 Ga0501043_0296099 Ga0501043_0296099_624_1070 148
135 3300049581 Ga0501047_0217983 Ga0501047_0217983_1223_1669 148
136 3300049581 Ga0501047_0551861 Ga0501047_0551861_93_539 148
137 3300049586 Ga0501070_0093068 Ga0501070_0093068_1896_2342 148
138 3300049590 Ga0501074_0446971 Ga0501074_0446971_301_765 148
139 3300049741 Ga0501079_0404529 Ga0501079_0404529_75_521 148
140 3300049744 Ga0501083_0357485 Ga0501083_0357485_22_468 148
141 3300049822 Ga0501035_0073075 Ga0501035_0073075_2100_2546 148
142 3300049822 Ga0501035_0257705 Ga0501035_0257705_895_1341 148
143 3300049823 Ga0501044_0616900 Ga0501044_0616900_389_835 148
144 3300049823 Ga0501044_0879424 Ga0501044_0879424_94_540 148
145 3300049824 Ga0501045_0248368 Ga0501045_0248368_134_580 148
146 3300050489 nmdc:mga03683_2742_c1 nmdc:mga03683_2742_c1_3037_3489 148
147 3300050491 nmdc:mga00v17_399480_c1 nmdc:mga00v17_399480_c1_369_821 148
148 3300050491 nmdc:mga00v17_838530_c1 nmdc:mga00v17_838530_c1_24_470 148
149 3300053119 Ga0500595_043657 Ga0500595_043657_312_758 148
150 3300053151 Ga0500604_0000468 Ga0500604_0000468_668_1114 148
151 3300053161 Ga0500634_0000087 Ga0500634_0000087_32090_32536 148
152 3300053161 Ga0500634_0182862 Ga0500634_0182862_300_758 148
153 3300055283 Ga0500661_089298 Ga0500661_089298_95_541 148

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04364

DNA_pol3_chi

DNA polymerase III chi subunit, HolC

1

135

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
3sxu-assembly1.cif.gz_A structure of the e. coli ssb-dna polymerase iii interface 0.7854 3 139
3sxu-assembly1.cif.gz_A structure of the e. coli ssb-dna polymerase iii interface 0.738 3 139
7tny-assembly1.cif.gz_A cryo-em structure of rig-i in complex with p2dsrna 0.7087 14 125
2wzq-assembly1.cif.gz_A insertion mutant e173gp174 of the ns3 protease-helicase from dengue virus 0.7071 3 108
3zd7-assembly1.cif.gz_A snapshot 3 of rig-i scanning on rna duplex 0.7025 14 126
ID Description Score Start End Superfamily
1em8C00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;DNA polymerase III subunit chi 0.832 1 135 3.40.50.10110
af_A0A140LFS6_48_320_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8024 17 77 3.40.50.300
1em8C00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;DNA polymerase III subunit chi 0.7656 1 135 3.40.50.10110
3b6eA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.7346 3 108 3.40.50.300
af_Q55GN2_655_805_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.7295 17 126 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A3S4CDR5-F1-model_v4 DNA polymerase III subunit chi 0.9887 1 148 GO:0003677
GO:0003887
GO:0006260
GO:0032298
AF-A0A0Q8IMN7-F1-model_v4 DNA polymerase III subunit chi 0.9859 1 148 GO:0003677
GO:0003887
GO:0006260
GO:0032298
AF-A0A7T8Y1G3-F1-model_v4 deleted 0.9841 1 148
AF-A0A3S4CDR5-F1-model_v4 DNA polymerase III subunit chi 0.9821 1 148 GO:0003677
GO:0003887
GO:0006260
GO:0032298
AF-A0A7V7BE83-F1-model_v4 deleted 0.9754 1 90

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pLDDT pTM Quality
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Predicted Structure (AlphaFold2)

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