F217425

General Info

Members Datasets Scaffolds Average Seq Length
153 114 140 314

Family's Representative Sequence

Representative Sequence 3300031901|Ga0307406_10000632|Ga0307406_1000063213
Length 358
Sequence MFSLPSWGGRNRLFPTTSAMTSAPLPDAGSNWVDRHAPEGLKPWLKLGRFDRPIGIWLLLLPGWQGIALALASERRTSSVYDLWLVIGFAIGACLMRAAGCAFNDIVDRDIDVKVARTAARPVASGRISVKKALAFTAACCLISLLILLTLNLTAILLGVASLLLVAAYPFMKRITWWPQAWLGLTFNWGALMGFAAAGASTSAVWLVWRTIETDGGNVVSFEYWSQLGSLTLAALALYAGGVFWTLGYDTVYALQDLEDDAMVGVKSSARRLGSNVRLGVSVFYLMAIVFAALAGLLAGLGPLFYLGLTAYAVHLLWQTRRVRADDGPLALRLFKSNREAGLILLLAIILGSVQLPL

Samples

Sample ID Description Type Environment
1 2585428106 Caulobacter sp. OV484 Isolate Rhizosphere
2 2643221574 Brevundimonas sp. Root608 Isolate Unclassified
3 2643221598 Phenylobacterium sp. Root700 Isolate Unclassified
4 2643221640 Caulobacter sp. Root342 Isolate Unclassified
5 2643221642 Caulobacter sp. Root343 Isolate Unclassified
6 2643221663 Brevundimonas sp. Root1279 Isolate Unclassified
7 2643221699 Brevundimonas sp. Root1423 Isolate Unclassified
8 2857504554 Caulobacter sp. R-72291 Isolate Unclassified
9 2884960567 Caulobacter sp. 602-1 Isolate Rhizosphere
10 2928531327 Caulobacter sp. 1776 Isolate Rhizosphere
11 2928972540 Brevundimonas sp. 1080 Isolate Rhizosphere
12 2977240413 Brevundimonas vesicularis SORGH_AS 431 Isolate Unclassified
13 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
14 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
15 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
16 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
17 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
18 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
19 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
20 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
21 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
22 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
23 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
24 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
25 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
26 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
27 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
30 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
31 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
32 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
33 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
34 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
35 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
36 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
37 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
38 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
39 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
40 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
41 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
42 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
43 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
44 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
48 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
50 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
68 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
69 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
70 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
71 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
72 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
73 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
74 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
75 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
76 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
77 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
78 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
79 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
80 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
81 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
82 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
83 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
84 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
85 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
86 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
87 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
88 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
89 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
90 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
91 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
92 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
93 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
94 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
95 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
96 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
97 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
98 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
99 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
100 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
101 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
102 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
103 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
106 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
107 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
108 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
109 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
110 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
111 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
112 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
113 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
114 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.2
Metatranscriptomes 1.31
Isolates 8.5

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 22.88
Nodule 0
Rhizoplane 3.27
Rhizosphere 59.48
Stem 0
Stem Tuber 0
Unclassified 14.38

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0006562J51391_1127959 3300003578 Bacteria 6081
2 Ga0006562J51391_1127961 3300003578 Bacteria 4450
3 Ga0055536_1000210 3300003781 Bacteria 47869
4 Ga0055536_1000276 3300003781 Bacteria 39172
5 Ga0055536_1002261 3300003781 Bacteria 10948
6 Ga0055530_10000341 3300003791 Bacteria 42186
7 Ga0055531_10000528 3300003794 Bacteria 34315
8 Ga0055531_10000759 3300003794 Bacteria 27021
9 Ga0055531_10003144 3300003794 Bacteria 10642
10 Ga0055531_10005957 3300003794 Bacteria 7005
11 Ga0065165_1012744 3300005262 Bacteria 3399
12 Ga0070658_10192330 3300005327 Bacteria 1720
13 Ga0070670_100059388 3300005331 Bacteria 3283
14 Ga0070670_100117578 3300005331 Bacteria 2293
15 Ga0070668_100023391 3300005347 Bacteria 4673
16 Ga0070671_100175627 3300005355 Bacteria 1812
17 Ga0070671_100180383 3300005355 Bacteria 1787
18 Ga0070673_100032261 3300005364 Bacteria 3942
19 Ga0070663_100361891 3300005455 Bacteria 1177
20 Ga0070662_100026969 3300005457 Bacteria 3983
21 Ga0068853_100007916 3300005539 Bacteria 8521
22 Ga0068853_100226011 3300005539 Bacteria 1711
23 Ga0070665_100216522 3300005548 Bacteria 1916
24 Ga0068856_100395558 3300005614 Bacteria 1401
25 Ga0068864_100027361 3300005618 Bacteria 4815
26 Ga0068863_100123701 3300005841 Bacteria 2468
27 Ga0068862_100201750 3300005844 Bacteria 1794
28 Ga0075366_10033293 3300006195 Bacteria 3035
29 Ga0105240_10001124 3300009093 Bacteria 46977
30 Ga0105248_10445745 3300009177 Bacteria 1458
31 Ga0105238_10011751 3300009551 Bacteria 8825
32 Ga0105032_102636 3300009979 Bacteria 1593
33 Ga0157373_10000643 3300013100 Bacteria 27439
34 Ga0157371_10014420 3300013102 Bacteria 5964
35 Ga0157370_10017021 3300013104 Bacteria 7345
36 Ga0157369_10023921 3300013105 Bacteria 6800
37 Ga0157375_10259852 3300013308 Bacteria 1898
38 Ga0163163_10050886 3300014325 Bacteria 4081
39 Ga0213872_10005155 3300021361 Bacteria 6770
40 Ga0213872_10029434 3300021361 Bacteria 2518
41 Ga0213872_10033935 3300021361 Bacteria 2337
42 Ga0213872_10071781 3300021361 Bacteria 1560
43 Ga0209026_1001338 3300025250 Bacteria 11040
44 Ga0209148_1000995 3300025254 Bacteria 18242
45 Ga0209455_1001189 3300025272 Bacteria 12439
46 Ga0209676_1000213 3300025292 Bacteria 128039
47 Ga0209676_1000230 3300025292 Bacteria 121783
48 Ga0209676_1000414 3300025292 Bacteria 76877
49 Ga0209676_1001646 3300025292 Bacteria 19617
50 Ga0209564_1013751 3300025295 Bacteria 3412
51 Ga0209050_1000090 3300025298 Bacteria 253783
52 Ga0209050_1000233 3300025298 Bacteria 121806
53 Ga0209050_1015286 3300025298 Bacteria 3236
54 Ga0209256_1017636 3300025299 Bacteria 2359
55 Ga0209051_1002281 3300025303 Bacteria 14016
56 Ga0209257_1000059 3300025304 Bacteria 378097
57 Ga0209257_1000282 3300025304 Bacteria 113789
58 Ga0209257_1000542 3300025304 Bacteria 64861
59 Ga0209257_1008914 3300025304 Bacteria 5525
60 Ga0207705_10142944 3300025909 Bacteria 1788
61 Ga0207695_10001000 3300025913 Bacteria 50091
62 Ga0207694_10054808 3300025924 Bacteria 3094
63 Ga0207650_10086477 3300025925 Bacteria 2387
64 Ga0207644_10295231 3300025931 Bacteria 1304
65 Ga0207706_10041223 3300025933 Bacteria 4093
66 Ga0207711_10001892 3300025941 Bacteria 19067
67 Ga0207711_10196426 3300025941 Bacteria 1840
68 Ga0207679_10036581 3300025945 Bacteria 3483
69 Ga0207668_10009389 3300025972 Bacteria 5861
70 Ga0207658_10144135 3300025986 Bacteria 1932
71 Ga0207639_10008302 3300026041 Bacteria 7116
72 Ga0207641_10139850 3300026088 Bacteria 2183
73 Ga0207676_10152415 3300026095 Bacteria 1992
74 Ga0268266_10363210 3300028379 Bacteria 1363
75 Ga0268265_10056895 3300028380 Bacteria 2978
76 Ga0265337_1019863 3300028556 Bacteria 2112
77 Ga0307511_10028350 3300030521 Bacteria 5086
78 Ga0265327_10000875 3300031251 Bacteria 44465
79 Ga0265327_10014170 3300031251 Bacteria 5232
80 Ga0307513_10003150 3300031456 Bacteria 22539
81 Ga0307516_10000001 3300031730 Bacteria 510338
82 Ga0307413_10016255 3300031824 Bacteria 3839
83 Ga0307406_10000632 3300031901 Bacteria 20135
84 Ga0307412_10049119 3300031911 Bacteria 2779
85 Ga0395899_0000016 3300037312 Bacteria 468322
86 Ga0395900_0090137 3300037418 Bacteria 3152
87 Ga0395898_0437403 3300037466 Bacteria 1246
88 Ga0395898_0465007 3300037466 Bacteria 1204
89 Ga0395905_0023220 3300037471 Bacteria 5862
90 Ga0395905_0106619 3300037471 Bacteria 2631
91 Ga0395901_0260792 3300038443 Bacteria 1804
92 Ga0436365_0066484 3300039437 Bacteria 1665
93 Ga0436365_1584433 3300039437 Bacteria 1986
94 Ga0436361_0135423 3300039447 Bacteria 14563
95 Ga0436361_0264772 3300039447 Bacteria 4218
96 Ga0436361_0585469 3300039447 Bacteria 4425
97 Ga0436361_1145978 3300039447 Bacteria 1224
98 Ga0466959_0093885 3300045049 Bacteria 2153
99 Ga0495638_0076783 3300046460 Bacteria 2035
100 Ga0495638_0086637 3300046460 Bacteria 1893
101 Ga0495583_0096936 3300046506 Bacteria 1263
102 Ga0495621_0038432 3300046539 Bacteria 1670
103 Ga0495597_0051877 3300046542 Bacteria 1807
104 Ga0495633_0006907 3300046558 Bacteria 6643
105 Ga0495668_0000141 3300046616 Bacteria 108840
106 Ga0495668_0082557 3300046616 Bacteria 1763
107 Ga0495625_0024424 3300046660 Bacteria 4599
108 Ga0495625_0038950 3300046660 Bacteria 3474
109 Ga0495625_0082144 3300046660 Bacteria 2241
110 Ga0495625_0154971 3300046660 Bacteria 1538
111 Ga0495613_0000196 3300046689 Bacteria 59720
112 Ga0495649_0002415 3300046694 Bacteria 13178
113 Ga0495686_0012802 3300047472 Bacteria 5853
114 Ga0495686_0016935 3300047472 Bacteria 4924
115 Ga0495686_0177218 3300047472 Bacteria 1237
116 Ga0496101_0039150 3300048904 Bacteria 3370
117 Ga0496106_0145117 3300048909 Bacteria 1869
118 Ga0496112_0015866 3300048915 Bacteria 7040
119 Ga0496113_0190451 3300048916 Bacteria 1628
120 Ga0496115_0143064 3300048918 Bacteria 1973
121 Ga0496122_0018905 3300048925 Bacteria 6328
122 Ga0496123_0001649 3300048926 Bacteria 29965
123 Ga0496124_0004035 3300048927 Bacteria 17450
124 Ga0496125_0004945 3300048928 Bacteria 15078
125 Ga0496126_0004737 3300048929 Bacteria 16041
126 Ga0501033_0001849 3300049570 Bacteria 18406
127 Ga0501033_0248333 3300049570 Bacteria 1262
128 Ga0501034_0010964 3300049571 Bacteria 9414
129 Ga0501034_0333371 3300049571 Bacteria 1448
130 Ga0501080_0245402 3300049742 Bacteria 1634
131 Ga0501044_0000588 3300049823 Bacteria 44117
132 nmdc:mga03683_84892_c1 3300050489 Bacteria 1372
133 Ga0500644_0004681 3300053088 Bacteria 3431
134 Ga0500651_0065899 3300053093 Bacteria 2256
135 Ga0500608_000028 3300053122 Bacteria 66949
136 Ga0500559_0002391 3300053136 Bacteria 9744
137 Ga0500573_0005416 3300053140 Bacteria 6836
138 Ga0500622_0005483 3300053156 Bacteria 7614
139 Ga0500622_0011530 3300053156 Bacteria 4813
140 Ga0500645_003753 3300053730 Bacteria 6055

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005539 Ga0068853_100226011 Ga0068853_1002260112 280
2 3300005539 Ga0068853_100007916 Ga0068853_1000079164 281
3 3300026041 Ga0207639_10008302 Ga0207639_100083022 281
4 3300003794 Ga0055531_10003144 Ga0055531_100031446 282
5 3300025298 Ga0209050_1000090 Ga0209050_100009095 282
6 3300025304 Ga0209257_1000059 Ga0209257_100005942 282
7 3300028380 Ga0268265_10056895 Ga0268265_100568952 282
8 3300046506 Ga0495583_0096936 Ga0495583_0096936_151_1083 283
9 3300025945 Ga0207679_10036581 Ga0207679_100365812 284
10 3300037471 Ga0395905_0106619 Ga0395905_0106619_1618_2550 284
11 3300049742 Ga0501080_0245402 Ga0501080_0245402_660_1589 285
12 3300013100 Ga0157373_10000643 Ga0157373_1000064321 287
13 3300046660 Ga0495625_0082144 Ga0495625_0082144_100_1032 287
14 3300025254 Ga0209148_1000995 Ga0209148_100099515 294
15 3300025272 Ga0209455_1001189 Ga0209455_10011892 294
16 3300031251 Ga0265327_10014170 Ga0265327_100141702 294
17 3300037466 Ga0395898_0437403 Ga0395898_0437403_178_1122 295
18 3300005331 Ga0070670_100059388 Ga0070670_1000593882 296
19 3300005355 Ga0070671_100180383 Ga0070671_1001803831 296
20 3300005364 Ga0070673_100032261 Ga0070673_1000322612 296
21 3300005455 Ga0070663_100361891 Ga0070663_1003618911 296
22 3300005457 Ga0070662_100026969 Ga0070662_1000269692 296
23 3300005618 Ga0068864_100027361 Ga0068864_1000273612 296
24 3300005841 Ga0068863_100123701 Ga0068863_1001237012 296
25 3300009177 Ga0105248_10445745 Ga0105248_104457451 296
26 3300013308 Ga0157375_10259852 Ga0157375_102598522 296
27 3300014325 Ga0163163_10050886 Ga0163163_100508863 296
28 3300025925 Ga0207650_10086477 Ga0207650_100864772 296
29 3300025931 Ga0207644_10295231 Ga0207644_102952311 296
30 3300025933 Ga0207706_10041223 Ga0207706_100412232 296
31 3300025941 Ga0207711_10196426 Ga0207711_101964262 296
32 3300025986 Ga0207658_10144135 Ga0207658_101441351 296
33 3300026088 Ga0207641_10139850 Ga0207641_101398502 296
34 3300026095 Ga0207676_10152415 Ga0207676_101524152 296
35 3300039447 Ga0436361_0135423 Ga0436361_0135423_5802_6746 296
36 3300048904 Ga0496101_0039150 Ga0496101_0039150_257_1189 296
37 3300048909 Ga0496106_0145117 Ga0496106_0145117_314_1246 296
38 3300048915 Ga0496112_0015866 Ga0496112_0015866_2984_3916 296
39 3300048916 Ga0496113_0190451 Ga0496113_0190451_452_1384 296
40 3300046660 Ga0495625_0024424 Ga0495625_0024424_1727_2641 298
41 3300021361 Ga0213872_10005155 Ga0213872_100051554 300
42 3300021361 Ga0213872_10029434 Ga0213872_100294343 300
43 3300021361 Ga0213872_10033935 Ga0213872_100339353 300
44 3300021361 Ga0213872_10071781 Ga0213872_100717812 300
45 3300039447 Ga0436361_0264772 Ga0436361_0264772_1463_2371 300
46 3300039447 Ga0436361_0585469 Ga0436361_0585469_1198_2112 300
47 3300045049 Ga0466959_0093885 Ga0466959_0093885_1198_2112 300
48 iso_pu_bacteria 2928531327 2928531769 300
49 3300028556 Ga0265337_1019863 Ga0265337_10198632 301
50 iso_pu_bacteria 2857504554 2857508510 301
51 iso_pu_bacteria 2585428106 2587919071 302
52 iso_pu_bacteria 2643221598 2643998292 302
53 iso_pu_bacteria 2643221640 2644227517 302
54 iso_pu_bacteria 2643221642 2644236965 302
55 iso_pu_bacteria 2884960567 2884961305 302
56 3300005262 Ga0065165_1012744 Ga0065165_10127444 303
57 3300025250 Ga0209026_1001338 Ga0209026_10013385 303
58 3300046660 Ga0495625_0154971 Ga0495625_0154971_313_1245 303
59 3300047472 Ga0495686_0012802 Ga0495686_0012802_4902_5834 303
60 3300053730 Ga0500645_003753 Ga0500645_003753_3142_4059 303
61 3300005331 Ga0070670_100117578 Ga0070670_1001175782 304
62 3300005347 Ga0070668_100023391 Ga0070668_1000233912 304
63 3300005844 Ga0068862_100201750 Ga0068862_1002017502 304
64 3300025972 Ga0207668_10009389 Ga0207668_100093895 304
65 3300031251 Ga0265327_10000875 Ga0265327_1000087520 304
66 3300031730 Ga0307516_10000001 Ga0307516_10000001306 304
67 3300037312 Ga0395899_0000016 Ga0395899_0000016_439900_440844 304
68 3300038443 Ga0395901_0260792 Ga0395901_0260792_695_1639 304
69 3300039447 Ga0436361_1145978 Ga0436361_1145978_44_1000 304
70 3300046539 Ga0495621_0038432 Ga0495621_0038432_528_1463 304
71 3300047472 Ga0495686_0016935 Ga0495686_0016935_2155_3084 304
72 3300049570 Ga0501033_0001849 Ga0501033_0001849_3688_4626 304
73 3300049570 Ga0501033_0248333 Ga0501033_0248333_191_1129 304
74 3300049571 Ga0501034_0010964 Ga0501034_0010964_1486_2424 304
75 3300049571 Ga0501034_0333371 Ga0501034_0333371_63_1001 304
76 3300049823 Ga0501044_0000588 Ga0501044_0000588_21504_22442 304
77 3300003781 Ga0055536_1000210 Ga0055536_100021033 305
78 3300003781 Ga0055536_1002261 Ga0055536_100226113 305
79 3300003791 Ga0055530_10000341 Ga0055530_1000034138 305
80 3300003794 Ga0055531_10000528 Ga0055531_1000052823 305
81 3300003794 Ga0055531_10000759 Ga0055531_1000075919 305
82 3300003794 Ga0055531_10005957 Ga0055531_100059571 305
83 3300005327 Ga0070658_10192330 Ga0070658_101923302 305
84 3300005355 Ga0070671_100175627 Ga0070671_1001756271 305
85 3300005548 Ga0070665_100216522 Ga0070665_1002165221 305
86 3300006195 Ga0075366_10033293 Ga0075366_100332933 305
87 3300009979 Ga0105032_102636 Ga0105032_1026361 305
88 3300025292 Ga0209676_1000230 Ga0209676_100023020 305
89 3300025292 Ga0209676_1000414 Ga0209676_100041427 305
90 3300025295 Ga0209564_1013751 Ga0209564_10137513 305
91 3300025298 Ga0209050_1000233 Ga0209050_100023320 305
92 3300025299 Ga0209256_1017636 Ga0209256_10176364 305
93 3300025303 Ga0209051_1002281 Ga0209051_100228113 305
94 3300025304 Ga0209257_1000282 Ga0209257_100028294 305
95 3300025304 Ga0209257_1008914 Ga0209257_10089142 305
96 3300025909 Ga0207705_10142944 Ga0207705_101429442 305
97 3300028379 Ga0268266_10363210 Ga0268266_103632102 305
98 3300031456 Ga0307513_10003150 Ga0307513_100031503 305
99 3300037466 Ga0395898_0465007 Ga0395898_0465007_43_963 305
100 3300037471 Ga0395905_0023220 Ga0395905_0023220_4549_5469 305
101 3300039437 Ga0436365_0066484 Ga0436365_0066484_666_1589 305
102 3300039437 Ga0436365_1584433 Ga0436365_1584433_1013_1939 305
103 3300046460 Ga0495638_0076783 Ga0495638_0076783_185_1120 305
104 3300046542 Ga0495597_0051877 Ga0495597_0051877_779_1714 305
105 3300046616 Ga0495668_0000141 Ga0495668_0000141_78367_79317 305
106 3300046616 Ga0495668_0082557 Ga0495668_0082557_469_1401 305
107 3300046660 Ga0495625_0038950 Ga0495625_0038950_599_1534 305
108 3300046689 Ga0495613_0000196 Ga0495613_0000196_49585_50523 305
109 3300047472 Ga0495686_0177218 Ga0495686_0177218_57_989 305
110 3300048918 Ga0496115_0143064 Ga0496115_0143064_1024_1947 305
111 3300048927 Ga0496124_0004035 Ga0496124_0004035_14845_15786 305
112 3300048928 Ga0496125_0004945 Ga0496125_0004945_8388_9320 305
113 3300048929 Ga0496126_0004737 Ga0496126_0004737_7036_7968 305
114 3300053122 Ga0500608_000028 Ga0500608_000028_4859_5794 305
115 3300053136 Ga0500559_0002391 Ga0500559_0002391_941_1873 305
116 3300053156 Ga0500622_0005483 Ga0500622_0005483_551_1483 305
117 3300053156 Ga0500622_0011530 Ga0500622_0011530_3571_4506 305
118 3300046460 Ga0495638_0086637 Ga0495638_0086637_70_1020 307
119 3300053140 Ga0500573_0005416 Ga0500573_0005416_1383_2405 310
120 3300050489 nmdc:mga03683_84892_c1 nmdc:mga03683_84892_c1_82_1080 319
121 3300030521 Ga0307511_10028350 Ga0307511_100283501 322
122 3300003781 Ga0055536_1000276 Ga0055536_100027612 325
123 3300025292 Ga0209676_1000213 Ga0209676_100021344 325
124 3300025298 Ga0209050_1015286 Ga0209050_10152862 325
125 3300025304 Ga0209257_1000542 Ga0209257_100054244 325
126 3300037418 Ga0395900_0090137 Ga0395900_0090137_233_1258 327
127 iso_pu_bacteria 2643221574 2643882639 329
128 iso_pu_bacteria 2643221699 2644549404 329
129 3300009551 Ga0105238_10011751 Ga0105238_100117515 330
130 3300025924 Ga0207694_10054808 Ga0207694_100548082 330
131 3300005614 Ga0068856_100395558 Ga0068856_1003955581 332
132 3300009093 Ga0105240_10001124 Ga0105240_1000112422 332
133 3300025913 Ga0207695_10001000 Ga0207695_1000100025 332
134 3300025941 Ga0207711_10001892 Ga0207711_1000189220 332
135 3300031824 Ga0307413_10016255 Ga0307413_100162553 332
136 3300046558 Ga0495633_0006907 Ga0495633_0006907_4611_5609 332
137 3300031901 Ga0307406_10000632 Ga0307406_1000063213 333
138 3300053088 Ga0500644_0004681 Ga0500644_0004681_433_1455 333
139 3300053093 Ga0500651_0065899 Ga0500651_0065899_1221_2243 333
140 3300046694 Ga0495649_0002415 Ga0495649_0002415_5662_6687 334
141 iso_pu_bacteria 2643221699 2644550448 337
142 3300025292 Ga0209676_1001646 Ga0209676_10016468 338
143 iso_pu_bacteria 2643221663 2644352527 339
144 iso_pu_bacteria 2928972540 2928973092 339
145 iso_pu_bacteria 2977240413 2977242870 339
146 3300003578 Ga0006562J51391_1127959 Ga0006562J51391_11279594 343
147 3300003578 Ga0006562J51391_1127961 Ga0006562J51391_11279613 343
148 3300013102 Ga0157371_10014420 Ga0157371_100144203 343
149 3300013104 Ga0157370_10017021 Ga0157370_1001702110 343
150 3300013105 Ga0157369_10023921 Ga0157369_100239219 343
151 3300031911 Ga0307412_10049119 Ga0307412_100491192 343
152 3300048925 Ga0496122_0018905 Ga0496122_0018905_3763_4794 343
153 3300048926 Ga0496123_0001649 Ga0496123_0001649_21034_22065 343

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01040

UbiA

UbiA prenyltransferase family

58

345

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
4od4-assembly1.cif.gz_A error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.8077 37 336
4od4-assembly1.cif.gz_A error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.7762 37 336
7bpu-assembly1.cif.gz_A structural and mechanistic insights into the biosynthesis of digeranylgeranylglyceryl phosphate synthase in membranes 0.7417 19 343
7bpu-assembly1.cif.gz_A structural and mechanistic insights into the biosynthesis of digeranylgeranylglyceryl phosphate synthase in membranes 0.7395 19 343
4tq6-assembly2.cif.gz_B error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.6503 24 341
ID Description Score Start End Superfamily
af_Q8I7J4_224_349_1.20.120.1780 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);UbiA prenyltransferase 0.9829 223 336 1.20.120.1780
af_Q54U71_333_454_1.20.120.1780 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);UbiA prenyltransferase 0.9819 225 336 1.20.120.1780
af_Q66JT7_234_356_1.20.120.1780 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);UbiA prenyltransferase 0.9787 224 339 1.20.120.1780
af_Q96H96_249_371_1.20.120.1780 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);UbiA prenyltransferase 0.9772 239 339 1.20.120.1780
af_Q4D2X9_251_372_1.20.120.1780 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);UbiA prenyltransferase 0.9693 224 339 1.20.120.1780
ID Description Score Start End GO Terms
AF-A0A7C5G9S3-F1-model_v4 4-hydroxybenzoate octaprenyltransferase 0.9596 10 244 GO:0005886
GO:0006744
GO:0016765
AF-A0A0K8MBK6-F1-model_v4 4-hydroxybenzoate octaprenyltransferase (EC 2.5.1.39) (4-HB polyprenyltransferase) 0.9592 22 341 GO:0005886
GO:0006744
GO:0008412
AF-A0A0N0K5C2-F1-model_v4 4-hydroxybenzoate octaprenyltransferase (EC 2.5.1.39) (4-HB polyprenyltransferase) 0.9582 2 340 GO:0005886
GO:0006744
GO:0008412
AF-A0A3M1JTS5-F1-model_v4 4-hydroxybenzoate octaprenyltransferase (EC 2.5.1.39) 0.957 11 341 GO:0005886
GO:0006744
GO:0008412
AF-A0A4Q3JJT2-F1-model_v4 deleted 0.9552 11 340

Feature Viewer

pLDDT pTM Quality
84.46 0.85 High
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Predicted Structure (AlphaFold2)

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