F215958

General Info

Members Datasets Scaffolds Average Seq Length
153 97 153 625

Family's Representative Sequence

Representative Sequence 3300005295|Ga0065707_10001337|Ga0065707_100013377
Length 695
Sequence MCVHRADTCAARCQGVSGCFSLIPIKSNNQYLLYNSGRNYKFRITPTQTMSLITVNSISKSFGAEDLFANVSFSVAKGARLALVGPNGIGKTTLLRILIGEEVPSAGTVTRPKSLRLGYLSQEADFELQGELWDVCLEPFADLIRMQGELEKLEVEMSDPAKREPALVRYGTLQHDFERRGGYVYQLQIKQVLTGLGFDPVDFHMSLDHLSGGQRTRAHLARLLLSNPDILLLDEPTNHLDIRAVEWLEGYLSQWDGAAVIVSHDRYFLDHACNALLEMAISGAEYYRGNYTTYLNERENRWQHRLEVFESEREKLMREVEYIKKNISGQNVQQAKGKLRRLTRVVQAVEQVGMDAVVNTNWSQLDVETTTSPFSVEEAERHVRALRPPRRLVPDLGLHLRSTQRSGDLVIRSKNLQVGYPAENSIPQKLLFRTPDIELRREDCAALIGPNGAGKSTFLKTILGQLEPLAGKVMLGASLHVGYFAQAHEGLDPEKTVLDEILAQSPGMLPHQGRDYLGKYLFSGDDAFKKVSMLSGGERGRLALAKLALQDTNLLLLDEPTNHLDIPAQEVLQSVLDAYKGTILLVTHDRYLVDELATQIWEINPDESQMIVFNGTYSQMKEEREKEAARLSQQQTEKIDTRNLNSEARKKLANLSMQLESPFVKPAEAAKLGTEYERVQKEMDQKLGEWERMQA

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
3 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
4 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
15 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
16 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
17 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
18 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
19 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
20 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
21 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
22 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
23 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
24 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
25 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
28 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
30 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
31 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
32 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
33 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
34 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
53 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
56 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
57 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
58 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
59 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
60 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
61 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
62 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
63 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
64 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
65 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
66 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
67 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
68 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
69 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
70 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
71 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
72 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
73 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
74 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
75 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
76 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
77 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
78 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
79 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
80 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
81 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
82 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
83 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
84 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
85 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
86 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
87 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
88 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
89 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
90 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
91 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
92 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
93 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
94 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
95 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
96 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
97 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.65
Nodule 0
Rhizoplane 0.65
Rhizosphere 97.39
Stem 0
Stem Tuber 0
Unclassified 1.31

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10003155 3300003203 Bacteria 7752
2 Ga0065704_10070229 3300005289 Bacteria 56373
3 Ga0065707_10001337 3300005295 Bacteria 10640
4 Ga0065707_10081970 3300005295 Bacteria 26755
5 Ga0065707_10086297 3300005295 Bacteria 5544
6 Ga0070666_10002717 3300005335 Bacteria 10684
7 Ga0068868_100001102 3300005338 Bacteria 18474
8 Ga0070689_100002484 3300005340 Bacteria 12053
9 Ga0070668_100016882 3300005347 Bacteria 5460
10 Ga0070675_100000023 3300005354 Bacteria 122380
11 Ga0070700_100030601 3300005441 Bacteria 3219
12 Ga0070698_100007410 3300005471 Bacteria 11872
13 Ga0070698_100016795 3300005471 Bacteria 7722
14 Ga0070698_100032111 3300005471 Bacteria 5440
15 Ga0070699_100010454 3300005518 Bacteria 8031
16 Ga0070696_100097992 3300005546 Bacteria 2097
17 Ga0070665_100000085 3300005548 Bacteria 180238
18 Ga0068859_100000016 3300005617 Bacteria 261719
19 Ga0068859_100017318 3300005617 Bacteria 7237
20 Ga0068870_10022026 3300005840 Bacteria 3127
21 Ga0068858_100014731 3300005842 Bacteria 7359
22 Ga0081455_10011643 3300005937 Bacteria 8825
23 Ga0081455_10019592 3300005937 Bacteria 6394
24 Ga0081539_10001449 3300005985 Bacteria 40567
25 Ga0070717_10000691 3300006028 Bacteria 21743
26 Ga0075428_100086316 3300006844 Bacteria 3423
27 Ga0075429_100034188 3300006880 Bacteria 4416
28 Ga0075436_100001696 3300006914 Bacteria 15079
29 Ga0097620_100000016 3300006931 Bacteria 261719
30 Ga0097620_100017318 3300006931 Bacteria 7237
31 Ga0075435_100018741 3300007076 Bacteria 5272
32 Ga0105244_10007608 3300009036 Bacteria 6866
33 Ga0105240_10005057 3300009093 Bacteria 19775
34 Ga0105245_10000457 3300009098 Bacteria 37366
35 Ga0105245_10001241 3300009098 Bacteria 23017
36 Ga0114129_10010600 3300009147 Bacteria 13141
37 Ga0114129_10011230 3300009147 Bacteria 12769
38 Ga0114129_10029923 3300009147 Bacteria 7712
39 Ga0114129_10060744 3300009147 Bacteria 5284
40 Ga0105242_10003189 3300009176 Bacteria 12785
41 Ga0105248_10050571 3300009177 Bacteria 4662
42 Ga0105249_10049950 3300009553 Unclassified 3814
43 Ga0157378_10001935 3300013297 Bacteria 18574
44 Ga0157379_10059927 3300014968 Bacteria 3404
45 Ga0207680_10002401 3300025903 Bacteria 8727
46 Ga0207643_10019832 3300025908 Bacteria 3686
47 Ga0207707_10057120 3300025912 Bacteria 3397
48 Ga0207695_10029176 3300025913 Bacteria 6103
49 Ga0207660_10067672 3300025917 Unclassified 2588
50 Ga0207652_10055374 3300025921 Bacteria 3411
51 Ga0207681_10012986 3300025923 Bacteria 5148
52 Ga0207650_10002641 3300025925 Bacteria 12400
53 Ga0207659_10000009 3300025926 Bacteria 308304
54 Ga0207687_10001085 3300025927 Bacteria 18494
55 Ga0207687_10001464 3300025927 Bacteria 16200
56 Ga0207700_10004848 3300025928 Bacteria 7987
57 Ga0207670_10000549 3300025936 Bacteria 20734
58 Ga0207712_10015732 3300025961 Unclassified 4886
59 Ga0207677_10000081 3300026023 Bacteria 78954
60 Ga0207703_10000215 3300026035 Bacteria 67474
61 Ga0207639_10000084 3300026041 Bacteria 80748
62 Ga0207708_10026252 3300026075 Bacteria 4406
63 Ga0207674_10121518 3300026116 Bacteria 2579
64 Ga0207428_10004217 3300027907 Bacteria 13761
65 Ga0268266_10000145 3300028379 Bacteria 135284
66 Ga0268265_10099381 3300028380 Bacteria 2346
67 Ga0265318_10002191 3300028577 Bacteria 10567
68 Ga0265338_10085267 3300028800 Bacteria 2633
69 Ga0265330_10022013 3300031235 Bacteria 2904
70 Ga0265328_10018025 3300031239 Bacteria 2728
71 Ga0265340_10000800 3300031247 Bacteria 17839
72 Ga0265331_10012999 3300031250 Bacteria 4486
73 Ga0307408_100065209 3300031548 Bacteria 2671
74 Ga0316579_10000899 3300031691 Bacteria 10328
75 Ga0316579_10028143 3300031691 Bacteria 2558
76 Ga0316576_10008706 3300031727 Bacteria 6495
77 Ga0316576_10055720 3300031727 Bacteria 2886
78 Ga0316578_10012593 3300031728 Bacteria 4463
79 Ga0307405_10002502 3300031731 Bacteria 8124
80 Ga0316577_10005672 3300031733 Bacteria 6549
81 Ga0316577_10009626 3300031733 Bacteria 5202
82 Ga0307413_10038122 3300031824 Bacteria 2783
83 Ga0307410_10010238 3300031852 Bacteria 5300
84 Ga0307406_10004646 3300031901 Bacteria 7478
85 Ga0307407_10008338 3300031903 Bacteria 4749
86 Ga0307409_100010634 3300031995 Bacteria 5738
87 Ga0307416_100003960 3300032002 Bacteria 8822
88 Ga0307414_10027622 3300032004 Bacteria 3670
89 Ga0316574_0000485 3300035398 Bacteria 16065
90 Ga0316574_0002588 3300035398 Bacteria 9116
91 Ga0316574_0003571 3300035398 Bacteria 8038
92 Ga0316582_0000340 3300036647 Bacteria 16513
93 Ga0316582_0032342 3300036647 Bacteria 3205
94 Ga0316584_0000972 3300036712 Bacteria 16417
95 Ga0316584_0001320 3300036712 Bacteria 14676
96 Ga0316584_0008183 3300036712 Bacteria 7191
97 Ga0316584_0041517 3300036712 Bacteria 3429
98 Ga0316584_0071313 3300036712 Bacteria 2603
99 Ga0316584_0095643 3300036712 Bacteria 2224
100 Ga0316581_0000226 3300037588 Bacteria 9658
101 Ga0400484_10968 3300038725 Bacteria 5901
102 Ga0400490_44422 3300038726 Bacteria 7227
103 Ga0451577_0001598 3300042876 Bacteria 29510
104 Ga0451577_0003473 3300042876 Bacteria 17528
105 Ga0451577_0003768 3300042876 Bacteria 16530
106 Ga0451577_0011466 3300042876 Bacteria 8382
107 Ga0451577_0018436 3300042876 Bacteria 6430
108 Ga0451577_0096858 3300042876 Bacteria 2634
109 Ga0453683_0001011 3300044673 Bacteria 26391
110 Ga0453683_0002618 3300044673 Bacteria 13780
111 Ga0453683_0013001 3300044673 Bacteria 5444
112 Ga0453684_0000003 3300044712 Bacteria 1481694
113 Ga0453684_0000056 3300044712 Bacteria 513389
114 Ga0453684_0000137 3300044712 Bacteria 323390
115 Ga0453684_0000171 3300044712 Bacteria 286600
116 Ga0453684_0000535 3300044712 Bacteria 144635
117 Ga0453684_0000959 3300044712 Bacteria 94983
118 Ga0453684_0001379 3300044712 Bacteria 70338
119 Ga0453684_0002516 3300044712 Bacteria 44186
120 Ga0453684_0005144 3300044712 Bacteria 26311
121 Ga0453684_0007426 3300044712 Bacteria 20158
122 Ga0453684_0012477 3300044712 Bacteria 14000
123 Ga0453684_0014661 3300044712 Bacteria 12502
124 Ga0453684_0035165 3300044712 Bacteria 6931
125 Ga0453684_0041121 3300044712 Bacteria 6259
126 Ga0453684_0067924 3300044712 Bacteria 4529
127 Ga0453684_0070694 3300044712 Bacteria 4418
128 Ga0453684_0074116 3300044712 Bacteria 4288
129 Ga0453684_0080130 3300044712 Bacteria 4079
130 Ga0453684_0099678 3300044712 Bacteria 3558
131 Ga0453684_0123590 3300044712 Bacteria 3120
132 Ga0453684_0124759 3300044712 Bacteria 3101
133 Ga0453684_0125951 3300044712 Bacteria 3083
134 Ga0451576_0000043 3300045051 Bacteria 335666
135 Ga0451576_0002670 3300045051 Bacteria 25977
136 Ga0451576_0007288 3300045051 Bacteria 13287
137 Ga0451576_0032899 3300045051 Bacteria 5514
138 Ga0451576_0093694 3300045051 Bacteria 3123
139 Ga0495684_0070471 3300047471 Bacteria 2658
140 Ga0496109_0000051 3300048912 Bacteria 126695
141 Ga0501073_0006444 3300049589 Bacteria 8732
142 Ga0501076_0069090 3300049592 Bacteria 2823
143 Ga0501079_0041937 3300049741 Bacteria 3534
144 Ga0501080_0020955 3300049742 Bacteria 6050
145 nmdc:mga05p37_1733_c1 3300050507 Bacteria 25460
146 nmdc:mga05p37_630_c1 3300050507 Bacteria 38995
147 nmdc:mga06r32_6209_c1 3300050510 Bacteria 10722
148 nmdc:mga0rr50_13781_c1 3300050513 Bacteria 5278
149 nmdc:mga08x19_197_c1 3300050514 Bacteria 47258
150 Ga0495655_0000568 3300053083 Bacteria 6077
151 Ga0500616_0000330 3300053153 Bacteria 68044
152 Ga0501084_0019431 3300054114 Bacteria 5661
153 Ga0501082_0068954 3300060353 Bacteria 3045

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300036647 Ga0316582_0032342 Ga0316582_0032342_1489_3192 478
2 3300042876 Ga0451577_0096858 Ga0451577_0096858_935_2593 506
3 3300025912 Ga0207707_10057120 Ga0207707_100571203 525
4 3300025921 Ga0207652_10055374 Ga0207652_100553743 525
5 3300048912 Ga0496109_0000051 Ga0496109_0000051_57195_59126 529
6 3300005546 Ga0070696_100097992 Ga0070696_1000979921 531
7 3300005937 Ga0081455_10019592 Ga0081455_100195923 537
8 3300050510 nmdc:mga06r32_6209_c1 nmdc:mga06r32_6209_c1_2122_4056 546
9 3300005340 Ga0070689_100002484 Ga0070689_1000024848 548
10 3300005840 Ga0068870_10022026 Ga0068870_100220262 548
11 3300005842 Ga0068858_100014731 Ga0068858_1000147312 548
12 3300009098 Ga0105245_10001241 Ga0105245_1000124114 548
13 3300025908 Ga0207643_10019832 Ga0207643_100198322 548
14 3300025925 Ga0207650_10002641 Ga0207650_100026412 548
15 3300025927 Ga0207687_10001085 Ga0207687_100010854 548
16 3300025936 Ga0207670_10000549 Ga0207670_100005494 548
17 3300026035 Ga0207703_10000215 Ga0207703_1000021545 548
18 3300009098 Ga0105245_10000457 Ga0105245_1000045733 551
19 3300025927 Ga0207687_10001464 Ga0207687_1000146413 551
20 3300005471 Ga0070698_100032111 Ga0070698_1000321113 552
21 3300005347 Ga0070668_100016882 Ga0070668_1000168823 555
22 3300025923 Ga0207681_10012986 Ga0207681_100129862 555
23 3300053153 Ga0500616_0000330 Ga0500616_0000330_10246_12294 557
24 3300005338 Ga0068868_100001102 Ga0068868_1000011029 558
25 3300006028 Ga0070717_10000691 Ga0070717_1000069114 558
26 3300025928 Ga0207700_10004848 Ga0207700_100048484 558
27 3300026023 Ga0207677_10000081 Ga0207677_1000008120 558
28 3300044712 Ga0453684_0000056 Ga0453684_0000056_211722_213626 558
29 3300044712 Ga0453684_0005144 Ga0453684_0005144_3275_5179 558
30 3300044712 Ga0453684_0070694 Ga0453684_0070694_284_2185 558
31 3300053083 Ga0495655_0000568 Ga0495655_0000568_149_2134 560
32 3300006914 Ga0075436_100001696 Ga0075436_1000016967 561
33 3300007076 Ga0075435_100018741 Ga0075435_1000187414 561
34 3300050513 nmdc:mga0rr50_13781_c1 nmdc:mga0rr50_13781_c1_1482_3413 561
35 3300050514 nmdc:mga08x19_197_c1 nmdc:mga08x19_197_c1_31399_33330 561
36 3300009093 Ga0105240_10005057 Ga0105240_100050572 562
37 3300009177 Ga0105248_10050571 Ga0105248_100505713 562
38 3300025913 Ga0207695_10029176 Ga0207695_100291762 562
39 3300026041 Ga0207639_10000084 Ga0207639_1000008433 562
40 3300005354 Ga0070675_100000023 Ga0070675_10000002381 563
41 3300009036 Ga0105244_10007608 Ga0105244_100076083 563
42 3300025926 Ga0207659_10000009 Ga0207659_1000000982 563
43 3300031824 Ga0307413_10038122 Ga0307413_100381222 563
44 3300005335 Ga0070666_10002717 Ga0070666_100027178 566
45 3300025903 Ga0207680_10002401 Ga0207680_100024014 566
46 3300047471 Ga0495684_0070471 Ga0495684_0070471_206_2170 566
47 3300044712 Ga0453684_0002516 Ga0453684_0002516_25245_27143 567
48 3300009176 Ga0105242_10003189 Ga0105242_1000318911 568
49 3300005937 Ga0081455_10011643 Ga0081455_100116435 570
50 3300031727 Ga0316576_10008706 Ga0316576_100087065 570
51 3300031733 Ga0316577_10005672 Ga0316577_100056722 570
52 3300036647 Ga0316582_0000340 Ga0316582_0000340_2844_4856 570
53 3300005617 Ga0068859_100000016 Ga0068859_10000001652 571
54 3300006931 Ga0097620_100000016 Ga0097620_100000016159 571
55 3300027907 Ga0207428_10004217 Ga0207428_100042177 571
56 3300031691 Ga0316579_10000899 Ga0316579_100008996 571
57 3300031728 Ga0316578_10012593 Ga0316578_100125932 571
58 3300035398 Ga0316574_0000485 Ga0316574_0000485_4957_6969 571
59 3300036712 Ga0316584_0001320 Ga0316584_0001320_5085_7097 571
60 3300014968 Ga0157379_10059927 Ga0157379_100599272 572
61 3300044712 Ga0453684_0099678 Ga0453684_0099678_1602_3539 572
62 3300031548 Ga0307408_100065209 Ga0307408_1000652092 573
63 3300031731 Ga0307405_10002502 Ga0307405_100025026 573
64 3300031852 Ga0307410_10010238 Ga0307410_100102383 573
65 3300031901 Ga0307406_10004646 Ga0307406_100046462 573
66 3300031903 Ga0307407_10008338 Ga0307407_100083382 573
67 3300031995 Ga0307409_100010634 Ga0307409_1000106344 573
68 3300032002 Ga0307416_100003960 Ga0307416_1000039605 573
69 3300032004 Ga0307414_10027622 Ga0307414_100276222 573
70 3300044712 Ga0453684_0035165 Ga0453684_0035165_4699_6720 574
71 3300037588 Ga0316581_0000226 Ga0316581_0000226_1074_3086 575
72 3300049589 Ga0501073_0006444 Ga0501073_0006444_1857_3923 577
73 3300049742 Ga0501080_0020955 Ga0501080_0020955_3836_5902 577
74 3300054114 Ga0501084_0019431 Ga0501084_0019431_531_2597 577
75 3300060353 Ga0501082_0068954 Ga0501082_0068954_312_2378 577
76 3300005548 Ga0070665_100000085 Ga0070665_10000008594 579
77 3300028379 Ga0268266_10000145 Ga0268266_100001459 579
78 3300031691 Ga0316579_10028143 Ga0316579_100281433 579
79 3300031733 Ga0316577_10009626 Ga0316577_100096263 579
80 3300036712 Ga0316584_0071313 Ga0316584_0071313_61_1959 579
81 3300042876 Ga0451577_0003768 Ga0451577_0003768_2474_4447 579
82 3300044712 Ga0453684_0000137 Ga0453684_0000137_298179_300152 579
83 3300013297 Ga0157378_10001935 Ga0157378_1000193513 580
84 3300044673 Ga0453683_0001011 Ga0453683_0001011_15624_17666 583
85 3300044712 Ga0453684_0007426 Ga0453684_0007426_9944_11989 583
86 3300045051 Ga0451576_0002670 Ga0451576_0002670_7435_9477 583
87 3300035398 Ga0316574_0003571 Ga0316574_0003571_2725_4749 588
88 3300044673 Ga0453683_0002618 Ga0453683_0002618_6619_8655 589
89 3300044712 Ga0453684_0074116 Ga0453684_0074116_665_2701 589
90 3300036712 Ga0316584_0095643 Ga0316584_0095643_52_2052 590
91 3300044712 Ga0453684_0125951 Ga0453684_0125951_826_2859 591
92 3300044712 Ga0453684_0123590 Ga0453684_0123590_130_2142 594
93 3300031727 Ga0316576_10055720 Ga0316576_100557201 596
94 3300036712 Ga0316584_0008183 Ga0316584_0008183_1542_3566 596
95 3300044712 Ga0453684_0000171 Ga0453684_0000171_282455_284458 600
96 3300044712 Ga0453684_0012477 Ga0453684_0012477_9333_11363 604
97 3300038725 Ga0400484_10968 Ga0400484_10968_2858_4906 605
98 3300038726 Ga0400490_44422 Ga0400490_44422_2799_4847 605
99 3300036712 Ga0316584_0000972 Ga0316584_0000972_9466_11484 606
100 3300044712 Ga0453684_0000959 Ga0453684_0000959_16423_18405 607
101 3300044712 Ga0453684_0080130 Ga0453684_0080130_1904_3886 607
102 3300036712 Ga0316584_0041517 Ga0316584_0041517_1007_3025 608
103 3300044712 Ga0453684_0001379 Ga0453684_0001379_61708_63708 609
104 3300009147 Ga0114129_10029923 Ga0114129_100299232 610
105 3300050507 nmdc:mga05p37_1733_c1 nmdc:mga05p37_1733_c1_7601_9631 610
106 3300045051 Ga0451576_0093694 Ga0451576_0093694_255_2258 612
107 3300035398 Ga0316574_0002588 Ga0316574_0002588_6020_8032 615
108 3300009147 Ga0114129_10010600 Ga0114129_1001060011 616
109 3300045051 Ga0451576_0032899 Ga0451576_0032899_892_2895 617
110 3300009553 Ga0105249_10049950 Ga0105249_100499502 618
111 3300025961 Ga0207712_10015732 Ga0207712_100157321 618
112 3300044673 Ga0453683_0013001 Ga0453683_0013001_521_2518 618
113 3300044712 Ga0453684_0124759 Ga0453684_0124759_250_2247 618
114 3300045051 Ga0451576_0000043 Ga0451576_0000043_160394_162391 618
115 3300025917 Ga0207660_10067672 Ga0207660_100676722 619
116 3300028577 Ga0265318_10002191 Ga0265318_100021915 619
117 3300028800 Ga0265338_10085267 Ga0265338_100852672 619
118 3300031235 Ga0265330_10022013 Ga0265330_100220132 619
119 3300031239 Ga0265328_10018025 Ga0265328_100180252 619
120 3300031247 Ga0265340_10000800 Ga0265340_100008007 619
121 3300031250 Ga0265331_10012999 Ga0265331_100129992 619
122 3300045051 Ga0451576_0007288 Ga0451576_0007288_2378_4381 619
123 3300005289 Ga0065704_10070229 Ga0065704_1007022923 620
124 3300005295 Ga0065707_10081970 Ga0065707_1008197015 620
125 3300009147 Ga0114129_10060744 Ga0114129_100607444 620
126 3300026116 Ga0207674_10121518 Ga0207674_101215182 620
127 3300042876 Ga0451577_0003473 Ga0451577_0003473_11961_13961 620
128 3300042876 Ga0451577_0011466 Ga0451577_0011466_2747_4768 620
129 3300044712 Ga0453684_0000003 Ga0453684_0000003_129169_131190 620
130 3300044712 Ga0453684_0000535 Ga0453684_0000535_12615_14615 620
131 3300044712 Ga0453684_0067924 Ga0453684_0067924_2196_4196 620
132 3300042876 Ga0451577_0001598 Ga0451577_0001598_11924_13936 621
133 3300044712 Ga0453684_0014661 Ga0453684_0014661_6138_8150 621
134 3300005471 Ga0070698_100016795 Ga0070698_1000167955 622
135 3300005295 Ga0065707_10001337 Ga0065707_100013377 623
136 3300005441 Ga0070700_100030601 Ga0070700_1000306012 623
137 3300005471 Ga0070698_100007410 Ga0070698_1000074108 623
138 3300005617 Ga0068859_100017318 Ga0068859_1000173184 623
139 3300006844 Ga0075428_100086316 Ga0075428_1000863162 623
140 3300006880 Ga0075429_100034188 Ga0075429_1000341882 623
141 3300006931 Ga0097620_100017318 Ga0097620_1000173184 623
142 3300009147 Ga0114129_10011230 Ga0114129_1001123012 623
143 3300026075 Ga0207708_10026252 Ga0207708_100262522 623
144 3300049592 Ga0501076_0069090 Ga0501076_0069090_804_2810 623
145 3300049741 Ga0501079_0041937 Ga0501079_0041937_924_2930 623
146 3300050507 nmdc:mga05p37_630_c1 nmdc:mga05p37_630_c1_11382_13406 623
147 3300005518 Ga0070699_100010454 Ga0070699_1000104546 625
148 3300005985 Ga0081539_10001449 Ga0081539_1000144917 625
149 3300005295 Ga0065707_10086297 Ga0065707_100862972 629
150 3300042876 Ga0451577_0018436 Ga0451577_0018436_810_2837 629
151 3300044712 Ga0453684_0041121 Ga0453684_0041121_2489_4516 629
152 3300028380 Ga0268265_10099381 Ga0268265_100993812 630
153 3300003203 JGI25406J46586_10003155 JGI25406J46586_100031555 631

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12848

ABC_tran_Xtn

ABC transporter

277

359

0.9

PF00005

ABC_tran

ABC transporter

68

238

0.88

PF00005

ABC_tran

ABC transporter

432

562

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
5zxd-assembly1.cif.gz_A crystal structure of atp-bound human abcf1 0.8469 1 579
5zxd-assembly1.cif.gz_A crystal structure of atp-bound human abcf1 0.8338 1 579
6r84-assembly1.cif.gz_A yeast vms1 (q295l)-60s ribosomal subunit complex (pre-state with arb1) 0.8209 8 573
5zxd-assembly2.cif.gz_B crystal structure of atp-bound human abcf1 0.8192 1 592
6xjh-assembly1.cif.gz_D pmtcd abc exporter without the basket domain at c2 symmetry 0.8167 1 241
ID Description Score Start End Superfamily
af_Q2FWL5_1_289_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9726 1 277 3.40.50.300
af_Q2FWL5_1_289_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9296 1 277 3.40.50.300
af_O53915_4_138_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9044 138 245 3.40.50.300
af_Q8IIE9_544_810_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8843 358 573 3.40.50.300
af_Q8T6B8_181_454_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8783 1 282 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A3D5B5A9-F1-model_v4 ABC transporter domain-containing protein 0.9739 1 186 GO:0005524
GO:0016887
AF-A0A351ZZN4-F1-model_v4 Glycosyl transferase family 2 0.9585 134 239 GO:0005524
GO:0016740
GO:0016887
AF-A0A7C4J5M4-F1-model_v4 ABC-F family ATP-binding cassette domain-containing protein 0.9543 1 239 GO:0005524
GO:0016887
AF-A0A3D5B5A9-F1-model_v4 ABC transporter domain-containing protein 0.9538 1 186 GO:0005524
GO:0016887
AF-A0A7V3NI62-F1-model_v4 ABC-F family ATP-binding cassette domain-containing protein 0.9536 1 562 GO:0005524
GO:0016887

Feature Viewer

pLDDT pTM Quality
84.91 0.75 High
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Predicted Structure (AlphaFold2)

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