F215924

General Info

Members Datasets Scaffolds Average Seq Length
153 101 134 393

Family's Representative Sequence

Representative Sequence 3300005289|Ga0065704_10000246|Ga0065704_1000024618
Length 419
Sequence LIPKLVLRDHWLTVDFNKTKKINPMNILELIGRDQELFTKDISNHELELKSIVSDSRFLVIGGAGSIGQAVTKEIFKRNPKKLHVVDISENNMVELVRDIRSSYGYIDGDFQTFALDIGSLEYDAFIQADGEYDYVLNLSALKHVRSEKDPYTLMRMIEVNVFNTDKTIQQSLDKGVKKYFCVSTDKAANPVNMMGASKRIMEMFLMRRSKDINISTARFANVAFSDGSLLHGFNQRIQKLQPIVAPNDIKRYFVIPKESGELCLMSCIFGENRDVFFPKLSESLHLITFADIAVKYLKELGYEPYLCESEDEARELIKTLPQQGKWPCLFTSSDTTGEKDFEEFFTENETLDMDRFDNLGVIKNEFRINDELLNLFSSRTQELKSNKAWSKEDIVELFFKMIPDFGHRETGKYLDAKM

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2511231000 Chryseobacterium populi CF314 Isolate Rhizosphere
3 2537561836 Rhodanobacter spathiphylli B39 Isolate Unclassified
4 2551306352 Acinetobacter sp. GG2 Isolate Rhizosphere
5 2582581281 Chryseobacterium sp. CF284 Isolate Rhizosphere
6 2582581282 Chryseobacterium sp. CF299 Isolate Rhizosphere
7 2643221562 Rhodanobacter sp. Root561 Isolate Unclassified
8 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
9 2648501241 Vibrio splendidus UCD-SED7 Isolate Rhizosphere
10 2651869818 Vibrio splendidus UCD-SED10 Isolate Rhizosphere
11 2687453341 Pirellula sp. SH-Sr6A Isolate Unclassified
12 2840677318 Chitinophaga alhagiae T22 Isolate Unclassified
13 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
14 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
15 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
16 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
17 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
18 2974310843 Enterobacter sp. SORGH_AS 287 Isolate Unclassified
19 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
20 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
21 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
25 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
26 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
27 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
28 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
30 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
31 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
32 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
33 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
34 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
35 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
36 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
37 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
38 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
39 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
40 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
41 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
47 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
49 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
50 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
51 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
52 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
53 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
54 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
55 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
56 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
57 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
58 3300044659 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2E Metagenome Unclassified
59 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
60 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
61 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
62 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
63 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
64 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
65 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
66 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
67 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
68 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
69 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
70 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
71 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
72 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
73 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
74 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
75 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
76 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
77 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
78 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
79 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
80 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
81 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
82 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
83 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
84 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
85 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
86 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
87 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
88 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
89 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
90 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
91 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
97 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
98 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
99 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
100 8054357960 Idiomarina rhizosphaerae M1R2S28 Isolate Rhizosphere
101 8055588893 Parapedobacter lycopersici KACC 18788 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 87.58
Metatranscriptomes 0
Isolates 12.42

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.31
Nodule 1.31
Rhizoplane 1.31
Rhizosphere 76.47
Stem 0
Stem Tuber 0
Unclassified 19.61

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1172411 2162886007 Bacteria 3447
2 Ga0065714_10002250 3300005288 Bacteria 34769
3 Ga0065714_10065182 3300005288 Bacteria 12135
4 Ga0065704_10000246 3300005289 Bacteria 53706
5 Ga0065704_10091286 3300005289 Bacteria 2727
6 Ga0070672_100018320 3300005543 Bacteria 5059
7 Ga0070665_100003535 3300005548 Bacteria 16618
8 Ga0068855_100115409 3300005563 Bacteria 3078
9 Ga0079104_1001791 3300006946 Bacteria 13344
10 Ga0105251_10002073 3300009011 Bacteria 16174
11 Ga0105250_10001031 3300009092 Bacteria 15995
12 Ga0105240_10000162 3300009093 Bacteria 136882
13 Ga0105240_10000884 3300009093 Bacteria 53814
14 Ga0111539_10033848 3300009094 Bacteria 6200
15 Ga0105237_10000908 3300009545 Bacteria 39814
16 Ga0105239_10000050 3300010375 Bacteria 173908
17 Ga0157373_10000387 3300013100 Bacteria 35264
18 Ga0157373_10018184 3300013100 Bacteria 5119
19 Ga0157371_10000911 3300013102 Bacteria 33321
20 Ga0157371_10000970 3300013102 Bacteria 31856
21 Ga0157371_10002237 3300013102 Bacteria 18712
22 Ga0157371_10002472 3300013102 Bacteria 17593
23 Ga0157370_10000552 3300013104 Bacteria 46652
24 Ga0157370_10000637 3300013104 Bacteria 43772
25 Ga0157370_10000885 3300013104 Bacteria 38082
26 Ga0157370_10001243 3300013104 Bacteria 31845
27 Ga0157370_10001276 3300013104 Bacteria 31520
28 Ga0157370_10002152 3300013104 Bacteria 24067
29 Ga0157370_10002540 3300013104 Bacteria 21935
30 Ga0157370_10008507 3300013104 Bacteria 11067
31 Ga0157369_10113745 3300013105 Bacteria 2875
32 Ga0157372_10004328 3300013307 Bacteria 15171
33 Ga0157372_10020781 3300013307 Bacteria 7089
34 Ga0157375_10559092 3300013308 Bacteria 1305
35 Ga0182008_10000022 3300014497 Bacteria 207052
36 Ga0182008_10000178 3300014497 Bacteria 49808
37 Ga0182008_10011780 3300014497 Bacteria 4638
38 Ga0182006_1006786 3300015261 Bacteria 5283
39 Ga0182007_10009593 3300015262 Bacteria 3890
40 Ga0163161_10000225 3300017792 Bacteria 51778
41 Ga0163161_10123543 3300017792 Bacteria 1947
42 Ga0207696_1001839 3300025711 Bacteria 10892
43 Ga0207713_1001841 3300025735 Bacteria 16182
44 Ga0207695_10000198 3300025913 Bacteria 167880
45 Ga0207695_10000870 3300025913 Bacteria 54964
46 Ga0207671_10018408 3300025914 Bacteria 5360
47 Ga0207691_10078298 3300025940 Bacteria 2976
48 Ga0209281_1001497 3300027111 Bacteria 13357
49 Ga0268266_10001971 3300028379 Bacteria 23030
50 Ga0265330_10004031 3300031235 Bacteria 7537
51 Ga0265327_10000354 3300031251 Bacteria 87227
52 Ga0265327_10050309 3300031251 Bacteria 2181
53 Ga0307408_100002175 3300031548 Bacteria 14027
54 Ga0307406_10000096 3300031901 Bacteria 50104
55 Ga0307412_10000001 3300031911 Bacteria 822691
56 Ga0307416_100001089 3300032002 Bacteria 14517
57 Ga0307414_10000010 3300032004 Bacteria 357863
58 Ga0307414_10000074 3300032004 Bacteria 94049
59 Ga0307414_10000198 3300032004 Bacteria 40555
60 Ga0307414_10002992 3300032004 Bacteria 8953
61 Ga0307414_10006907 3300032004 Bacteria 6356
62 Ga0307414_10009267 3300032004 Bacteria 5645
63 Ga0307414_10014637 3300032004 Bacteria 4710
64 Ga0307414_10037693 3300032004 Bacteria 3240
65 Ga0395900_0169682 3300037418 Bacteria 2222
66 Ga0439432_000808 3300042006 Bacteria 11686
67 Ga0439432_007850 3300042006 Bacteria 3763
68 Ga0439446_0004550 3300042156 Bacteria 3516
69 Ga0466973_0074707 3300044659 Bacteria 2997
70 Ga0466965_0013862 3300044683 Bacteria 3808
71 Ga0466966_0054480 3300044684 Bacteria 2534
72 Ga0466961_0040272 3300044693 Bacteria 2996
73 Ga0453684_0000015 3300044712 Bacteria 969198
74 Ga0453684_0000020 3300044712 Bacteria 879938
75 Ga0453684_0004803 3300044712 Bacteria 27817
76 Ga0453684_0005922 3300044712 Bacteria 23708
77 Ga0453684_0009764 3300044712 Bacteria 16664
78 Ga0453684_0104802 3300044712 Bacteria 3451
79 Ga0453684_0110966 3300044712 Bacteria 3332
80 Ga0466957_0002133 3300044842 Bacteria 10584
81 Ga0466959_0010728 3300045049 Bacteria 6562
82 Ga0451576_0000001 3300045051 Bacteria 1802108
83 Ga0451576_0088623 3300045051 Bacteria 3219
84 Ga0495627_000002 3300046453 Bacteria 903861
85 Ga0495627_001475 3300046453 Bacteria 13666
86 Ga0495638_0001774 3300046460 Bacteria 18902
87 Ga0495607_0010717 3300046501 Bacteria 6142
88 Ga0495628_0078146 3300046516 Unclassified 2574
89 Ga0495643_0001023 3300046522 Bacteria 28484
90 Ga0495643_0019450 3300046522 Bacteria 3929
91 Ga0495663_0000062 3300046525 Bacteria 50363
92 Ga0495663_0000294 3300046525 Bacteria 18926
93 Ga0495642_0000573 3300046528 Bacteria 18451
94 Ga0495654_0000006 3300046530 Bacteria 451432
95 Ga0495597_0000267 3300046542 Bacteria 47731
96 Ga0495597_0017425 3300046542 Bacteria 3382
97 Ga0495661_0000630 3300046665 Bacteria 35776
98 Ga0495649_0001338 3300046694 Bacteria 18712
99 Ga0495681_0031443 3300047470 Bacteria 2686
100 Ga0495686_0004457 3300047472 Bacteria 11534
101 Ga0496101_0023020 3300048904 Bacteria 4298
102 Ga0496105_0005744 3300048908 Bacteria 9449
103 Ga0496117_0006377 3300048920 Bacteria 11984
104 Ga0496117_0026053 3300048920 Bacteria 4583
105 Ga0496117_0053644 3300048920 Bacteria 2831
106 Ga0496118_0000839 3300048921 Bacteria 48884
107 Ga0496118_0005490 3300048921 Bacteria 14390
108 Ga0496118_0024786 3300048921 Bacteria 5167
109 Ga0496118_0028277 3300048921 Bacteria 4726
110 Ga0496119_0000048 3300048922 Bacteria 185846
111 Ga0496120_0000133 3300048923 Bacteria 126194
112 Ga0496120_0015336 3300048923 Bacteria 5061
113 Ga0496121_0000013 3300048924 Bacteria 614976
114 Ga0496122_0013653 3300048925 Bacteria 7928
115 Ga0496123_0000750 3300048926 Bacteria 52534
116 Ga0496124_0000045 3300048927 Bacteria 287396
117 Ga0496124_0001484 3300048927 Bacteria 34470
118 Ga0496124_0015795 3300048927 Bacteria 7214
119 Ga0496125_0000031 3300048928 Bacteria 365156
120 Ga0496126_0000240 3300048929 Bacteria 117890
121 Ga0496126_0005419 3300048929 Bacteria 14555
122 Ga0496126_0041998 3300048929 Bacteria 4227
123 Ga0496126_0049868 3300048929 Bacteria 3820
124 Ga0501032_0019504 3300049569 Bacteria 4743
125 Ga0501033_0000794 3300049570 Bacteria 28919
126 Ga0501033_0002464 3300049570 Bacteria 15695
127 Ga0501043_0014084 3300049579 Bacteria 6258
128 Ga0501047_0007550 3300049581 Bacteria 10235
129 Ga0501035_0052723 3300049822 Bacteria 3639
130 Ga0501035_0074239 3300049822 Bacteria 3009
131 Ga0501044_0368988 3300049823 Bacteria 1352
132 nmdc:mga08y16_47517_c1 3300050511 Bacteria 4492
133 Ga0500641_0000451 3300053096 Bacteria 14898
134 Ga0500642_0001991 3300053130 Bacteria 5932

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300031911 Ga0307412_10000001 Ga0307412_10000001205 344
2 3300048928 Ga0496125_0000031 Ga0496125_0000031_76820_78007 352
3 3300048929 Ga0496126_0041998 Ga0496126_0041998_260_1447 352
4 3300049570 Ga0501033_0000794 Ga0501033_0000794_25022_26209 357
5 3300013104 Ga0157370_10001276 Ga0157370_100012765 361
6 3300044659 Ga0466973_0074707 Ga0466973_0074707_1831_2982 364
7 3300045051 Ga0451576_0088623 Ga0451576_0088623_982_2133 364
8 3300049569 Ga0501032_0019504 Ga0501032_0019504_2136_3323 364
9 3300049579 Ga0501043_0014084 Ga0501043_0014084_1383_2570 364
10 3300049581 Ga0501047_0007550 Ga0501047_0007550_3535_4722 364
11 3300049822 Ga0501035_0074239 Ga0501035_0074239_734_1921 364
12 3300037418 Ga0395900_0169682 Ga0395900_0169682_200_1369 370
13 iso_pu_bacteria 2902048731 2902049542 370
14 3300031251 Ga0265327_10000354 Ga0265327_100003547 372
15 3300046453 Ga0495627_000002 Ga0495627_000002_857488_858675 372
16 3300046525 Ga0495663_0000062 Ga0495663_0000062_8922_10109 372
17 3300046530 Ga0495654_0000006 Ga0495654_0000006_122408_123595 372
18 3300047472 Ga0495686_0004457 Ga0495686_0004457_3448_4635 372
19 iso_pu_bacteria 2511231000 2511231771 372
20 iso_pu_bacteria 2537561836 2538834743 372
21 iso_pu_bacteria 2582581281 2585156209 372
22 iso_pu_bacteria 2582581282 2585160418 372
23 iso_pu_bacteria 2643221562 2643829240 372
24 iso_pu_bacteria 2643221600 2644009235 372
25 iso_pu_bacteria 2842903701 2842908211 372
26 iso_pu_bacteria 2919191525 2919194262 372
27 iso_pu_bacteria 2954016120 2954020849 372
28 iso_pu_bacteria 8055588893 8055592040 372
29 iso_pu_bacteria 2648501241 2649122201 373
30 iso_pu_bacteria 2651869818 2652976764 373
31 iso_pu_bacteria 2974310843 2974311299 373
32 iso_pu_bacteria 8054357960 8054358577 373
33 3300049822 Ga0501035_0052723 Ga0501035_0052723_878_2059 374
34 iso_pu_bacteria 2687453341 2688392266 374
35 iso_pu_bacteria 2551306352 2552747715 375
36 3300005288 Ga0065714_10002250 Ga0065714_1000225014 376
37 3300005288 Ga0065714_10065182 Ga0065714_100651823 376
38 3300005289 Ga0065704_10091286 Ga0065704_100912862 376
39 3300005543 Ga0070672_100018320 Ga0070672_1000183206 376
40 3300009093 Ga0105240_10000162 Ga0105240_1000016276 376
41 3300009093 Ga0105240_10000884 Ga0105240_1000088435 376
42 3300009545 Ga0105237_10000908 Ga0105237_1000090824 376
43 3300010375 Ga0105239_10000050 Ga0105239_10000050105 376
44 3300013100 Ga0157373_10000387 Ga0157373_100003874 376
45 3300013102 Ga0157371_10000970 Ga0157371_1000097026 376
46 3300013102 Ga0157371_10002237 Ga0157371_100022379 376
47 3300013104 Ga0157370_10000552 Ga0157370_1000055228 376
48 3300013104 Ga0157370_10000637 Ga0157370_1000063727 376
49 3300013104 Ga0157370_10000885 Ga0157370_1000088535 376
50 3300013104 Ga0157370_10001243 Ga0157370_100012434 376
51 3300013104 Ga0157370_10002152 Ga0157370_1000215218 376
52 3300013104 Ga0157370_10002540 Ga0157370_1000254020 376
53 3300013104 Ga0157370_10008507 Ga0157370_100085073 376
54 3300013308 Ga0157375_10559092 Ga0157375_105590921 376
55 3300014497 Ga0182008_10000022 Ga0182008_10000022142 376
56 3300014497 Ga0182008_10000178 Ga0182008_1000017823 376
57 3300014497 Ga0182008_10011780 Ga0182008_100117802 376
58 3300015261 Ga0182006_1006786 Ga0182006_10067863 376
59 3300015262 Ga0182007_10009593 Ga0182007_100095932 376
60 3300017792 Ga0163161_10000225 Ga0163161_1000022526 376
61 3300017792 Ga0163161_10123543 Ga0163161_101235432 376
62 3300025913 Ga0207695_10000198 Ga0207695_1000019897 376
63 3300025913 Ga0207695_10000870 Ga0207695_1000087039 376
64 3300025914 Ga0207671_10018408 Ga0207671_100184085 376
65 3300025940 Ga0207691_10078298 Ga0207691_100782983 376
66 3300031548 Ga0307408_100002175 Ga0307408_1000021753 376
67 3300031901 Ga0307406_10000096 Ga0307406_1000009644 376
68 3300032002 Ga0307416_100001089 Ga0307416_1000010896 376
69 3300032004 Ga0307414_10000010 Ga0307414_10000010308 376
70 3300032004 Ga0307414_10000074 Ga0307414_1000007461 376
71 3300032004 Ga0307414_10000198 Ga0307414_100001983 376
72 3300032004 Ga0307414_10002992 Ga0307414_100029922 376
73 3300032004 Ga0307414_10006907 Ga0307414_100069075 376
74 3300032004 Ga0307414_10009267 Ga0307414_100092672 376
75 3300032004 Ga0307414_10014637 Ga0307414_100146374 376
76 3300032004 Ga0307414_10037693 Ga0307414_100376932 376
77 3300044712 Ga0453684_0004803 Ga0453684_0004803_15038_16228 376
78 3300044712 Ga0453684_0110966 Ga0453684_0110966_173_1360 376
79 3300046516 Ga0495628_0078146 Ga0495628_0078146_1209_2399 376
80 3300046522 Ga0495643_0019450 Ga0495643_0019450_1447_2634 376
81 3300046542 Ga0495597_0017425 Ga0495597_0017425_452_1642 376
82 3300048904 Ga0496101_0023020 Ga0496101_0023020_1553_2740 376
83 3300048908 Ga0496105_0005744 Ga0496105_0005744_3297_4484 376
84 3300048920 Ga0496117_0026053 Ga0496117_0026053_1589_2776 376
85 3300048921 Ga0496118_0000839 Ga0496118_0000839_31329_32516 376
86 3300048921 Ga0496118_0028277 Ga0496118_0028277_680_1867 376
87 3300048922 Ga0496119_0000048 Ga0496119_0000048_179651_180838 376
88 3300048923 Ga0496120_0000133 Ga0496120_0000133_119996_121183 376
89 3300048924 Ga0496121_0000013 Ga0496121_0000013_189734_190921 376
90 3300048929 Ga0496126_0000240 Ga0496126_0000240_64456_65643 376
91 3300049570 Ga0501033_0002464 Ga0501033_0002464_3762_4949 376
92 3300049823 Ga0501044_0368988 Ga0501044_0368988_113_1300 376
93 3300053096 Ga0500641_0000451 Ga0500641_0000451_258_1445 376
94 3300053130 Ga0500642_0001991 Ga0500642_0001991_4349_5536 376
95 3300006946 Ga0079104_1001791 Ga0079104_10017912 377
96 3300009092 Ga0105250_10001031 Ga0105250_1000103116 377
97 3300013100 Ga0157373_10018184 Ga0157373_100181845 377
98 3300013102 Ga0157371_10000911 Ga0157371_1000091125 377
99 3300013307 Ga0157372_10004328 Ga0157372_1000432812 377
100 3300025711 Ga0207696_1001839 Ga0207696_100183911 377
101 3300027111 Ga0209281_1001497 Ga0209281_10014972 377
102 3300031235 Ga0265330_10004031 Ga0265330_100040312 377
103 3300042006 Ga0439432_000808 Ga0439432_000808_7421_8611 377
104 3300042006 Ga0439432_007850 Ga0439432_007850_337_1527 377
105 3300042156 Ga0439446_0004550 Ga0439446_0004550_1355_2545 377
106 3300044712 Ga0453684_0005922 Ga0453684_0005922_18014_19204 377
107 3300044712 Ga0453684_0009764 Ga0453684_0009764_8831_10021 377
108 3300044712 Ga0453684_0104802 Ga0453684_0104802_530_1720 377
109 3300045051 Ga0451576_0000001 Ga0451576_0000001_1004853_1006043 377
110 3300046694 Ga0495649_0001338 Ga0495649_0001338_11877_13067 377
111 3300048920 Ga0496117_0006377 Ga0496117_0006377_1638_2828 377
112 3300048920 Ga0496117_0053644 Ga0496117_0053644_1401_2591 377
113 3300048921 Ga0496118_0005490 Ga0496118_0005490_11562_12752 377
114 3300048921 Ga0496118_0024786 Ga0496118_0024786_766_1956 377
115 3300048923 Ga0496120_0015336 Ga0496120_0015336_1057_2247 377
116 3300048925 Ga0496122_0013653 Ga0496122_0013653_848_2038 377
117 3300048926 Ga0496123_0000750 Ga0496123_0000750_678_1868 377
118 3300048927 Ga0496124_0000045 Ga0496124_0000045_191644_192834 377
119 3300048927 Ga0496124_0001484 Ga0496124_0001484_5379_6569 377
120 3300048929 Ga0496126_0005419 Ga0496126_0005419_11727_12917 377
121 iso_pu_bacteria 2840677318 2840678439 377
122 iso_pu_bacteria 2896085136 2896086256 377
123 3300005563 Ga0068855_100115409 Ga0068855_1001154092 378
124 3300013105 Ga0157369_10113745 Ga0157369_101137451 378
125 3300044712 Ga0453684_0000015 Ga0453684_0000015_848716_849921 378
126 3300044712 Ga0453684_0000020 Ga0453684_0000020_832088_833293 378
127 2162886007 SwRhRL2b_contig_1172411 SwRhRL2b_0653.00006640 379
128 3300005289 Ga0065704_10000246 Ga0065704_1000024618 379
129 3300005548 Ga0070665_100003535 Ga0070665_1000035353 379
130 3300009011 Ga0105251_10002073 Ga0105251_100020733 379
131 3300009094 Ga0111539_10033848 Ga0111539_100338483 379
132 3300013102 Ga0157371_10002472 Ga0157371_100024722 379
133 3300013307 Ga0157372_10020781 Ga0157372_100207815 379
134 3300025735 Ga0207713_1001841 Ga0207713_100184114 379
135 3300028379 Ga0268266_10001971 Ga0268266_100019717 379
136 3300031251 Ga0265327_10050309 Ga0265327_100503092 379
137 3300044683 Ga0466965_0013862 Ga0466965_0013862_790_1989 379
138 3300044684 Ga0466966_0054480 Ga0466966_0054480_45_1244 379
139 3300044693 Ga0466961_0040272 Ga0466961_0040272_896_2095 379
140 3300044842 Ga0466957_0002133 Ga0466957_0002133_1365_2564 379
141 3300045049 Ga0466959_0010728 Ga0466959_0010728_3729_4928 379
142 3300046453 Ga0495627_001475 Ga0495627_001475_11141_12337 379
143 3300046460 Ga0495638_0001774 Ga0495638_0001774_5244_6440 379
144 3300046501 Ga0495607_0010717 Ga0495607_0010717_3512_4708 379
145 3300046522 Ga0495643_0001023 Ga0495643_0001023_22060_23256 379
146 3300046525 Ga0495663_0000294 Ga0495663_0000294_12593_13789 379
147 3300046528 Ga0495642_0000573 Ga0495642_0000573_9997_11196 379
148 3300046542 Ga0495597_0000267 Ga0495597_0000267_13652_14848 379
149 3300046665 Ga0495661_0000630 Ga0495661_0000630_4279_5478 379
150 3300047470 Ga0495681_0031443 Ga0495681_0031443_1421_2617 379
151 3300048927 Ga0496124_0015795 Ga0496124_0015795_2733_3932 379
152 3300048929 Ga0496126_0049868 Ga0496126_0049868_2164_3360 379
153 3300050511 nmdc:mga08y16_47517_c1 nmdc:mga08y16_47517_c1_1551_2753 379

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

58

365

0.8

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

58

223

0.79

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

59

203

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
3pvz-assembly1.cif.gz_A udp-n-acetylglucosamine 4,6-dehydratase from vibrio fischeri 0.9262 7 366
3pvz-assembly2.cif.gz_D udp-n-acetylglucosamine 4,6-dehydratase from vibrio fischeri 0.9247 7 366
3pvz-assembly2.cif.gz_C udp-n-acetylglucosamine 4,6-dehydratase from vibrio fischeri 0.9151 7 367
3pvz-assembly2.cif.gz_D udp-n-acetylglucosamine 4,6-dehydratase from vibrio fischeri 0.8954 7 366
3pvz-assembly1.cif.gz_A udp-n-acetylglucosamine 4,6-dehydratase from vibrio fischeri 0.8944 7 366
ID Description Score Start End Superfamily
3nzoD02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1; 0.9926 203 313 3.90.25.40
3nzoD02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1; 0.9682 203 313 3.90.25.40
6bwcE01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8834 33 200 3.40.50.720
3vvbA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.879 33 257 3.40.50.720
3pvzB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8747 7 376 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A2E1QCU5-F1-model_v4 deleted 1.002 7 95
AF-A0A4U7KKJ4-F1-model_v4 deleted 0.9921 7 144
AF-A0A1Q3J1K8-F1-model_v4 Polysaccharide biosynthesis protein CapD-like domain-containing protein 0.9913 7 109
AF-A0A4U9KS10-F1-model_v4 deleted 0.9891 7 313
AF-A0A355UHD1-F1-model_v4 UDP-N-acetylglucosamine 4,6-dehydratase 0.9845 2 189

Feature Viewer

pLDDT pTM Quality
88.08 0.87 High
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Predicted Structure (AlphaFold2)

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