F212384

General Info

Members Datasets Scaffolds Average Seq Length
151 109 146 320

Family's Representative Sequence

Representative Sequence 3300045051|Ga0451576_0001719|Ga0451576_0001719_20353_21336
Length 327
Sequence MSTRIEIDHRKQGAARHPEKAHRPDNPIQRKPAWIRVKAPTHPIYVETRALIREKGLVTVCEEAACPNIGECWSQRHATMMIMGDTCTRACSFCNVATGMPNPLDATEPGRVADAVAQMGLRHVVITSVDRDDLADGGAAHFAAVIRAIRAAAPGTTIEILTPDFLRKGDAAIETVVAARPDVFNHNLETVPRLYPSIRPGARYFVSLRLLSRVKEMDATIFTKSGLMVGLGEERAELMQVMDDLRAADVDFLTLGQYLQPTVKHAAVARFVTPEEFAEYGAVARGKGFAMVASSPLTRSSYHADSDFAALRAAREAQLGATATRAR

Samples

Sample ID Description Type Environment
1 2894772417 Roseomonas oryzicola KCTC 22478 Isolate Rhizosphere
2 2909399089 Nguyenibacter vanlangensis LMG 31431 Isolate Unclassified
3 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
4 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
5 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
6 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
7 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
8 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
9 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
10 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
11 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
12 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
13 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
14 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
15 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
16 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
17 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
18 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
19 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
20 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
21 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
22 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
23 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
24 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
25 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
26 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
27 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
28 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
40 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
41 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
42 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
43 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
44 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
45 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
46 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
47 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
48 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
49 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
50 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
51 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
52 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
53 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
54 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
55 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
56 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
57 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
58 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
59 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
60 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
61 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
62 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
63 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
64 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
65 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
66 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
67 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
68 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
69 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
70 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
71 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
72 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
73 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
74 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
75 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
76 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
77 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
78 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
79 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
80 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
81 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
82 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
83 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
84 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
85 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
86 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
87 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
93 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
94 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
95 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
97 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
98 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
99 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
100 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
101 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
102 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
103 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
104 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
105 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
106 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
107 641228493 Gluconacetobacter diazotrophicus PA1 5 Isolate Unclassified
108 643348555 Gluconacetobacter diazotrophicus PA1 5 Isolate Unclassified
109 8054002106 Azospirillum lipoferum 59b Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 96.69
Metatranscriptomes 0
Isolates 3.31

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.97
Nodule 0
Rhizoplane 0
Rhizosphere 81.46
Stem 0
Stem Tuber 0
Unclassified 14.57

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25153J46596_10000617 3300003215 Bacteria 21726
2 Ga0068868_100152077 3300005338 Bacteria 1906
3 Ga0068868_100153231 3300005338 Bacteria 1899
4 Ga0070681_10146116 3300005458 Bacteria 2294
5 Ga0068856_100026530 3300005614 Bacteria 5649
6 Ga0068856_100047113 3300005614 Bacteria 4246
7 Ga0068856_100391282 3300005614 Bacteria 1410
8 Ga0081455_10042230 3300005937 Bacteria 4003
9 Ga0081539_10000059 3300005985 Bacteria 254888
10 Ga0097621_100000350 3300006237 Bacteria 31767
11 Ga0097621_100009234 3300006237 Bacteria 7154
12 Ga0097621_100048646 3300006237 Bacteria 3441
13 Ga0068871_100002801 3300006358 Bacteria 11922
14 Ga0068871_100025817 3300006358 Bacteria 4577
15 Ga0075428_100017065 3300006844 Bacteria 8020
16 Ga0075430_100158231 3300006846 Bacteria 1886
17 Ga0075433_10086765 3300006852 Bacteria 2764
18 Ga0075433_10284102 3300006852 Bacteria 1466
19 Ga0105240_10097176 3300009093 Bacteria 3589
20 Ga0105240_10340940 3300009093 Bacteria 1702
21 Ga0105240_10420448 3300009093 Bacteria 1502
22 Ga0105247_10293185 3300009101 Bacteria 1126
23 Ga0105243_10448054 3300009148 Bacteria 1210
24 Ga0105242_10018078 3300009176 Bacteria 5506
25 Ga0105239_10012180 3300010375 Bacteria 9588
26 Ga0105239_10368614 3300010375 Bacteria 1623
27 Ga0105246_10009620 3300011119 Bacteria 5956
28 Ga0163162_10122076 3300013306 Bacteria 2710
29 Ga0163163_10000002 3300014325 Bacteria 609846
30 Ga0182008_10017877 3300014497 Bacteria 3673
31 Ga0157379_10000819 3300014968 Bacteria 25208
32 Ga0213872_10014028 3300021361 Bacteria 3745
33 Ga0213872_10047210 3300021361 Bacteria 1958
34 Ga0213876_10000428 3300021384 Bacteria 34846
35 Ga0213875_10000674 3300021388 Bacteria 26801
36 Ga0213875_10019365 3300021388 Bacteria 3274
37 Ga0213875_10028122 3300021388 Bacteria 2673
38 Ga0213875_10124044 3300021388 Bacteria 1207
39 Ga0209758_1000013 3300025297 Bacteria 873003
40 Ga0207695_10047110 3300025913 Bacteria 4565
41 Ga0207652_10169280 3300025921 Bacteria 1960
42 Ga0207687_10041793 3300025927 Bacteria 3150
43 Ga0207700_10067803 3300025928 Bacteria 2733
44 Ga0207664_10209235 3300025929 Bacteria 1687
45 Ga0207686_10095441 3300025934 Bacteria 1973
46 Ga0207711_10273620 3300025941 Bacteria 1554
47 Ga0207689_10358913 3300025942 Bacteria 1212
48 Ga0207702_10374940 3300026078 Bacteria 1367
49 Ga0207683_10023807 3300026121 Bacteria 5269
50 Ga0207683_10126786 3300026121 Bacteria 2294
51 Ga0268266_10055953 3300028379 Bacteria 3393
52 Ga0265318_10002719 3300028577 Bacteria 9281
53 Ga0265338_10015469 3300028800 Bacteria 8377
54 Ga0265338_10092028 3300028800 Bacteria 2503
55 Ga0265332_10023942 3300031238 Bacteria 2691
56 Ga0265328_10072653 3300031239 Bacteria 1265
57 Ga0265339_10012538 3300031249 Bacteria 5174
58 Ga0265331_10003277 3300031250 Bacteria 10531
59 Ga0265331_10017711 3300031250 Bacteria 3709
60 Ga0265327_10000179 3300031251 Bacteria 135005
61 Ga0265313_10004812 3300031595 Bacteria 10165
62 Ga0316579_10021440 3300031691 Bacteria 2879
63 Ga0265314_10010794 3300031711 Bacteria 7594
64 Ga0265314_10169699 3300031711 Bacteria 1318
65 Ga0316583_10018690 3300032133 Bacteria 2489
66 Ga0373954_0024052 3300035118 Bacteria 2775
67 Ga0373954_0140219 3300035118 Bacteria 1179
68 Ga0373956_0024139 3300035119 Bacteria 2617
69 Ga0373955_0090609 3300035172 Bacteria 1742
70 Ga0373935_0104116 3300035692 Bacteria 1875
71 Ga0373933_0111574 3300035724 Bacteria 1706
72 Ga0373947_0194978 3300035725 Bacteria 1323
73 Ga0373937_0004034 3300036401 Bacteria 12437
74 Ga0373937_0019640 3300036401 Bacteria 6049
75 Ga0373925_0097945 3300037068 Bacteria 2250
76 Ga0395899_0000013 3300037312 Bacteria 510397
77 Ga0395898_0027559 3300037466 Bacteria 5701
78 Ga0436364_0339856 3300037853 Bacteria 17634
79 Ga0436364_0682804 3300037853 Bacteria 2108
80 Ga0436364_1050572 3300037853 Bacteria 2070
81 Ga0436364_1090536 3300037853 Bacteria 4158
82 Ga0436364_1102652 3300037853 Bacteria 9586
83 Ga0436364_1183619 3300037853 Bacteria 29970
84 Ga0436364_1224135 3300037853 Bacteria 88093
85 Ga0436364_1303762 3300037853 Bacteria 1442
86 Ga0436364_1480640 3300037853 Bacteria 1033
87 Ga0400486_27899 3300038742 Bacteria 1380
88 Ga0436365_1432912 3300039437 Bacteria 91459
89 Ga0436365_1552785 3300039437 Bacteria 7054
90 Ga0436360_0786214 3300039438 Bacteria 2281
91 Ga0436361_0004040 3300039447 Bacteria 2045
92 Ga0436361_0309495 3300039447 Bacteria 1251
93 Ga0436361_0520458 3300039447 Bacteria 4666
94 Ga0436361_0691119 3300039447 Bacteria 1052
95 Ga0436363_1082332 3300039450 Bacteria 1463
96 Ga0436362_0754456 3300039453 Bacteria 3787
97 Ga0436362_1020451 3300039453 Bacteria 2740
98 Ga0453684_0209123 3300044712 Bacteria 2269
99 Ga0466957_0040538 3300044842 Bacteria 2813
100 Ga0451576_0001719 3300045051 Bacteria 36102
101 Ga0466967_0113611 3300045976 Bacteria 2492
102 Ga0495651_0056656 3300046462 Bacteria 3009
103 Ga0495664_0003073 3300046477 Bacteria 9048
104 Ga0495606_0089209 3300046507 Bacteria 1900
105 Ga0495608_0009858 3300046511 Bacteria 6667
106 Ga0495628_0033385 3300046516 Bacteria 4149
107 Ga0495630_0248740 3300046517 Bacteria 1358
108 Ga0495652_0070780 3300046529 Bacteria 2914
109 Ga0495652_0094497 3300046529 Bacteria 2438
110 Ga0495652_0125997 3300046529 Bacteria 2035
111 Ga0495587_0007396 3300046536 Bacteria 7115
112 Ga0495587_0045146 3300046536 Bacteria 2620
113 Ga0495645_0000438 3300046543 Bacteria 28682
114 Ga0495667_0100612 3300046559 Bacteria 1870
115 Ga0495657_0073567 3300046675 Bacteria 2225
116 Ga0495646_0021094 3300046680 Bacteria 4118
117 Ga0495674_0183221 3300047319 Bacteria 1743
118 Ga0495675_0015958 3300047444 Bacteria 4750
119 Ga0495684_0053797 3300047471 Bacteria 3071
120 Ga0495684_0297453 3300047471 Bacteria 1160
121 Ga0495602_0000833 3300048088 Bacteria 29668
122 Ga0495602_0101705 3300048088 Bacteria 2357
123 Ga0501032_0215823 3300049569 Bacteria 1250
124 Ga0501038_0160438 3300049574 Bacteria 1827
125 Ga0501042_0233019 3300049578 Bacteria 1328
126 Ga0501043_0159053 3300049579 Bacteria 1766
127 Ga0501047_0006389 3300049581 Bacteria 11085
128 Ga0501047_0021645 3300049581 Bacteria 6175
129 Ga0501070_0356368 3300049586 Bacteria 1187
130 Ga0501076_0263729 3300049592 Bacteria 1411
131 Ga0501083_0035251 3300049744 Bacteria 3418
132 Ga0501035_0049163 3300049822 Bacteria 3780
133 Ga0501035_0091422 3300049822 Bacteria 2679
134 Ga0501044_0060171 3300049823 Bacteria 3890
135 nmdc:mga05p37_127121_c1 3300050507 Bacteria 3130
136 nmdc:mga0qj67_84746_c1 3300050509 Bacteria 2541
137 nmdc:mga0n895_6874_c1 3300050512 Bacteria 9716
138 nmdc:mga0a205_105526_c1 3300050515 Bacteria 2716
139 nmdc:mga0a205_54080_c1 3300050515 Bacteria 3876
140 Ga0495601_0003365 3300053077 Bacteria 9155
141 Ga0495612_0001041 3300053078 Bacteria 11358
142 Ga0500595_041525 3300053119 Bacteria 1478
143 Ga0500568_0011984 3300053139 Bacteria 4000
144 Ga0500568_0021727 3300053139 Bacteria 2757
145 Ga0500573_0000025 3300053140 Bacteria 144473
146 Ga0501082_0214821 3300060353 Bacteria 1673

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300006852 Ga0075433_10086765 Ga0075433_100867652 291
2 3300037466 Ga0395898_0027559 Ga0395898_0027559_2153_3055 296
3 3300037853 Ga0436364_1480640 Ga0436364_1480640_27_950 299
4 3300006844 Ga0075428_100017065 Ga0075428_1000170652 300
5 3300006852 Ga0075433_10284102 Ga0075433_102841022 301
6 3300050507 nmdc:mga05p37_127121_c1 nmdc:mga05p37_127121_c1_995_1900 301
7 3300050512 nmdc:mga0n895_6874_c1 nmdc:mga0n895_6874_c1_4474_5379 301
8 3300050515 nmdc:mga0a205_105526_c1 nmdc:mga0a205_105526_c1_908_1813 301
9 3300050515 nmdc:mga0a205_54080_c1 nmdc:mga0a205_54080_c1_877_1782 301
10 3300039447 Ga0436361_0004040 Ga0436361_0004040_10_930 305
11 iso_pu_bacteria 8054002106 8054005093 305
12 3300009093 Ga0105240_10340940 Ga0105240_103409402 307
13 3300031239 Ga0265328_10072653 Ga0265328_100726531 307
14 3300031250 Ga0265331_10017711 Ga0265331_100177112 307
15 3300031595 Ga0265313_10004812 Ga0265313_100048122 307
16 3300021361 Ga0213872_10014028 Ga0213872_100140284 308
17 3300021361 Ga0213872_10047210 Ga0213872_100472102 308
18 3300039447 Ga0436361_0309495 Ga0436361_0309495_208_1152 308
19 3300039447 Ga0436361_0520458 Ga0436361_0520458_3476_4420 308
20 3300039447 Ga0436361_0691119 Ga0436361_0691119_77_1024 308
21 3300044842 Ga0466957_0040538 Ga0466957_0040538_1349_2296 308
22 3300006237 Ga0097621_100000350 Ga0097621_1000003508 309
23 3300006237 Ga0097621_100009234 Ga0097621_1000092343 309
24 3300006358 Ga0068871_100002801 Ga0068871_1000028015 309
25 3300009093 Ga0105240_10097176 Ga0105240_100971763 309
26 3300025913 Ga0207695_10047110 Ga0207695_100471103 309
27 3300028379 Ga0268266_10055953 Ga0268266_100559534 309
28 3300044712 Ga0453684_0209123 Ga0453684_0209123_153_1103 309
29 3300049586 Ga0501070_0356368 Ga0501070_0356368_206_1162 309
30 3300006358 Ga0068871_100025817 Ga0068871_1000258177 311
31 3300009148 Ga0105243_10448054 Ga0105243_104480541 311
32 3300031249 Ga0265339_10012538 Ga0265339_100125386 311
33 3300031711 Ga0265314_10010794 Ga0265314_100107948 311
34 3300031711 Ga0265314_10169699 Ga0265314_101696992 311
35 iso_pu_bacteria 2894772417 2894775194 311
36 iso_pu_bacteria 2909399089 2909401494 311
37 iso_pu_bacteria 641228493 641335892 311
38 iso_pu_bacteria 643348555 643389699 311
39 3300021384 Ga0213876_10000428 Ga0213876_1000042811 312
40 3300026078 Ga0207702_10374940 Ga0207702_103749401 312
41 3300028800 Ga0265338_10092028 Ga0265338_100920284 312
42 3300039437 Ga0436365_1432912 Ga0436365_1432912_65788_66726 312
43 3300005338 Ga0068868_100153231 Ga0068868_1001532312 313
44 3300005614 Ga0068856_100391282 Ga0068856_1003912822 313
45 3300005937 Ga0081455_10042230 Ga0081455_100422302 313
46 3300006237 Ga0097621_100048646 Ga0097621_1000486463 313
47 3300011119 Ga0105246_10009620 Ga0105246_100096205 313
48 3300014325 Ga0163163_10000002 Ga0163163_10000002619 313
49 3300014968 Ga0157379_10000819 Ga0157379_1000081927 313
50 3300025942 Ga0207689_10358913 Ga0207689_103589132 313
51 3300026121 Ga0207683_10126786 Ga0207683_101267863 313
52 3300028577 Ga0265318_10002719 Ga0265318_1000271911 313
53 3300031238 Ga0265332_10023942 Ga0265332_100239423 313
54 3300031250 Ga0265331_10003277 Ga0265331_100032774 313
55 3300031251 Ga0265327_10000179 Ga0265327_1000017998 313
56 3300031691 Ga0316579_10021440 Ga0316579_100214404 313
57 3300032133 Ga0316583_10018690 Ga0316583_100186901 313
58 3300035118 Ga0373954_0024052 Ga0373954_0024052_434_1408 313
59 3300035119 Ga0373956_0024139 Ga0373956_0024139_1029_2003 313
60 3300035172 Ga0373955_0090609 Ga0373955_0090609_199_1173 313
61 3300035692 Ga0373935_0104116 Ga0373935_0104116_636_1610 313
62 3300035724 Ga0373933_0111574 Ga0373933_0111574_39_1013 313
63 3300036401 Ga0373937_0004034 Ga0373937_0004034_6981_7955 313
64 3300037312 Ga0395899_0000013 Ga0395899_0000013_60396_61358 313
65 3300038742 Ga0400486_27899 Ga0400486_27899_28_1005 313
66 3300045976 Ga0466967_0113611 Ga0466967_0113611_346_1320 313
67 3300046507 Ga0495606_0089209 Ga0495606_0089209_531_1484 313
68 3300046517 Ga0495630_0248740 Ga0495630_0248740_24_989 313
69 3300046529 Ga0495652_0094497 Ga0495652_0094497_1259_2200 313
70 3300046529 Ga0495652_0125997 Ga0495652_0125997_217_1269 313
71 3300049569 Ga0501032_0215823 Ga0501032_0215823_76_1038 313
72 3300049574 Ga0501038_0160438 Ga0501038_0160438_388_1395 313
73 3300049579 Ga0501043_0159053 Ga0501043_0159053_65_1006 313
74 3300049581 Ga0501047_0006389 Ga0501047_0006389_8291_9232 313
75 3300049581 Ga0501047_0021645 Ga0501047_0021645_2579_3586 313
76 3300049592 Ga0501076_0263729 Ga0501076_0263729_158_1105 313
77 3300049744 Ga0501083_0035251 Ga0501083_0035251_1955_2962 313
78 3300049822 Ga0501035_0049163 Ga0501035_0049163_41_982 313
79 3300049822 Ga0501035_0091422 Ga0501035_0091422_1308_2303 313
80 3300049823 Ga0501044_0060171 Ga0501044_0060171_602_1609 313
81 3300053139 Ga0500568_0011984 Ga0500568_0011984_2624_3586 313
82 3300053140 Ga0500573_0000025 Ga0500573_0000025_111966_112910 313
83 3300060353 Ga0501082_0214821 Ga0501082_0214821_26_1033 313
84 3300005338 Ga0068868_100152077 Ga0068868_1001520772 314
85 3300005614 Ga0068856_100026530 Ga0068856_1000265304 314
86 3300014497 Ga0182008_10017877 Ga0182008_100178771 314
87 3300025928 Ga0207700_10067803 Ga0207700_100678032 314
88 3300025929 Ga0207664_10209235 Ga0207664_102092352 314
89 3300046477 Ga0495664_0003073 Ga0495664_0003073_5671_6615 314
90 3300046511 Ga0495608_0009858 Ga0495608_0009858_24_968 314
91 3300046516 Ga0495628_0033385 Ga0495628_0033385_602_1546 314
92 3300046536 Ga0495587_0007396 Ga0495587_0007396_4296_5240 314
93 3300046543 Ga0495645_0000438 Ga0495645_0000438_5604_6548 314
94 3300046559 Ga0495667_0100612 Ga0495667_0100612_801_1745 314
95 3300046680 Ga0495646_0021094 Ga0495646_0021094_2099_3043 314
96 3300047319 Ga0495674_0183221 Ga0495674_0183221_488_1432 314
97 3300047444 Ga0495675_0015958 Ga0495675_0015958_836_1780 314
98 3300048088 Ga0495602_0000833 Ga0495602_0000833_16458_17402 314
99 3300053077 Ga0495601_0003365 Ga0495601_0003365_1149_2093 314
100 3300053078 Ga0495612_0001041 Ga0495612_0001041_6900_7844 314
101 3300005458 Ga0070681_10146116 Ga0070681_101461162 315
102 3300005985 Ga0081539_10000059 Ga0081539_1000005914 315
103 3300009101 Ga0105247_10293185 Ga0105247_102931851 315
104 3300010375 Ga0105239_10012180 Ga0105239_1001218010 315
105 3300021388 Ga0213875_10000674 Ga0213875_1000067418 315
106 3300021388 Ga0213875_10019365 Ga0213875_100193652 315
107 3300021388 Ga0213875_10028122 Ga0213875_100281222 315
108 3300021388 Ga0213875_10124044 Ga0213875_101240442 315
109 3300025921 Ga0207652_10169280 Ga0207652_101692802 315
110 3300025941 Ga0207711_10273620 Ga0207711_102736202 315
111 3300028800 Ga0265338_10015469 Ga0265338_100154694 315
112 3300035118 Ga0373954_0140219 Ga0373954_0140219_114_1079 315
113 3300035725 Ga0373947_0194978 Ga0373947_0194978_19_1002 315
114 3300036401 Ga0373937_0019640 Ga0373937_0019640_4598_5563 315
115 3300037068 Ga0373925_0097945 Ga0373925_0097945_738_1691 315
116 3300037853 Ga0436364_0339856 Ga0436364_0339856_16605_17564 315
117 3300037853 Ga0436364_0682804 Ga0436364_0682804_841_1821 315
118 3300037853 Ga0436364_1050572 Ga0436364_1050572_846_1814 315
119 3300037853 Ga0436364_1102652 Ga0436364_1102652_7832_8794 315
120 3300037853 Ga0436364_1183619 Ga0436364_1183619_11058_12047 315
121 3300037853 Ga0436364_1224135 Ga0436364_1224135_35867_36847 315
122 3300037853 Ga0436364_1303762 Ga0436364_1303762_195_1154 315
123 3300039437 Ga0436365_1552785 Ga0436365_1552785_1247_2215 315
124 3300039450 Ga0436363_1082332 Ga0436363_1082332_202_1167 315
125 3300039453 Ga0436362_0754456 Ga0436362_0754456_947_1927 315
126 3300039453 Ga0436362_1020451 Ga0436362_1020451_1477_2454 315
127 3300045051 Ga0451576_0001719 Ga0451576_0001719_20353_21336 315
128 3300046462 Ga0495651_0056656 Ga0495651_0056656_1875_2840 315
129 3300046529 Ga0495652_0070780 Ga0495652_0070780_302_1267 315
130 3300046536 Ga0495587_0045146 Ga0495587_0045146_1451_2416 315
131 3300046675 Ga0495657_0073567 Ga0495657_0073567_153_1118 315
132 3300047471 Ga0495684_0297453 Ga0495684_0297453_171_1124 315
133 3300049578 Ga0501042_0233019 Ga0501042_0233019_282_1274 315
134 3300003215 JGI25153J46596_10000617 JGI25153J46596_1000061714 316
135 3300005614 Ga0068856_100047113 Ga0068856_1000471134 316
136 3300006846 Ga0075430_100158231 Ga0075430_1001582311 316
137 3300009093 Ga0105240_10420448 Ga0105240_104204482 316
138 3300009176 Ga0105242_10018078 Ga0105242_100180787 316
139 3300010375 Ga0105239_10368614 Ga0105239_103686142 316
140 3300013306 Ga0163162_10122076 Ga0163162_101220763 316
141 3300025297 Ga0209758_1000013 Ga0209758_1000013581 316
142 3300025927 Ga0207687_10041793 Ga0207687_100417933 316
143 3300025934 Ga0207686_10095441 Ga0207686_100954412 316
144 3300026121 Ga0207683_10023807 Ga0207683_100238076 316
145 3300037853 Ga0436364_1090536 Ga0436364_1090536_378_1487 316
146 3300039438 Ga0436360_0786214 Ga0436360_0786214_39_1055 316
147 3300047471 Ga0495684_0053797 Ga0495684_0053797_1769_2803 316
148 3300048088 Ga0495602_0101705 Ga0495602_0101705_492_1466 316
149 3300050509 nmdc:mga0qj67_84746_c1 nmdc:mga0qj67_84746_c1_1437_2465 316
150 3300053119 Ga0500595_041525 Ga0500595_041525_473_1453 316
151 3300053139 Ga0500568_0021727 Ga0500568_0021727_229_1251 316

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04055

Radical_SAM

Radical SAM superfamily

81

245

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
5exk-assembly6.cif.gz_K crystal structure of m. tuberculosis lipoyl synthase with 6-thiooctanoyl peptide intermediate 0.969 17 311
4u0p-assembly1.cif.gz_B the crystal structure of lipoyl synthase in complex with s-adenosyl homocysteine 0.9529 27 302
5exk-assembly6.cif.gz_K crystal structure of m. tuberculosis lipoyl synthase with 6-thiooctanoyl peptide intermediate 0.9464 17 311
4u0o-assembly1.cif.gz_B crystal structure of thermosynechococcus elongatus lipoyl synthase 2 complexed with mta and dtt 0.9371 30 302
5exi-assembly1.cif.gz_A crystal structure of m. tuberculosis lipoyl synthase at 2.28 a resolution 0.9315 39 315
ID Description Score Start End Superfamily
af_P60716_82_298_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9909 76 286 3.20.20.70
af_P9WK91_74_280_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9837 79 286 3.20.20.70
af_P0CH67_115_331_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9821 68 276 3.20.20.70
af_Q2FZX4_3_265_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.978 25 281 3.20.20.70
af_P9WK91_74_280_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9743 79 286 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A3D2R0W3-F1-model_v4 Lipoyl synthase (EC 2.8.1.8) 1.001 181 253 GO:0016992
GO:0046872
GO:0051539
AF-A0A436B320-F1-model_v4 lipoyl synthase (EC 2.8.1.8) 0.9966 79 314 GO:0016992
GO:0046872
GO:0051539
AF-A0A531YMD4-F1-model_v4 deleted 0.9964 114 297
AF-A0A2S6RRG8-F1-model_v4 Lipoyl synthase (EC 2.8.1.8) (Lip-syn) (LS) (Lipoate synthase) (Lipoic acid synthase) (Sulfur insertion protein LipA) 0.9958 79 315 GO:0005737
GO:0016992
GO:0046872
GO:0051539
AF-A0A383EMX3-F1-model_v4 Radical SAM core domain-containing protein 0.9956 110 315 GO:0016992
GO:0046872
GO:0051539

Feature Viewer

pLDDT pTM Quality
89.26 0.88 High
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Predicted Structure (AlphaFold2)

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