F211124

General Info

Members Datasets Scaffolds Average Seq Length
151 118 302 428

Family's Representative Sequence

Representative Sequence 3300005844|Ga0068862_100183675|Ga0068862_1001836752
Length 473
Sequence MKDLKKRMTGANDLPVSPQINLRSSVVNYFQLANSTNMNAPQKEMNSEIHYQSVQQALSLVKSGHRLFIHGSACTPVFLMRHLAQRKDELQNVELVFISVYGDIVVDRPEYANSFHINTMFVSKSIRAAVNEGRADFIPVFLSEIPQLFKRGALPLDGALVQVSPPDKNGYCSLGVSVDVARTAVETAKYVIAQVNPQVPRTHGDSFIHVSKFSVIVFADEPLQEGHFGEGTSTEEKMIGNLIAEMIEDRSVLQLGIGSIPDAVLRSLHNHKDLGVHTEMFSDGLIALCEKGIITNKFKKVHPYKTVAGFAVGTRNLYDYVHDNPSFEFLEIDYVNDPSVIRRNKNMIAINSAIEVDITGQVCADSIGAYQYSGIGGQMDFMRGASLSEGGKPIIAITSRTKHKTPRIVPVLKPGAGVVTTRGHIHYVVTEYGIADLYGKNLRQRAKALINISHPDDRENLSRACFERFKVFL

Samples

Sample ID Description Type Environment
1 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
2 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
10 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
11 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
12 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
16 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
17 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
18 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
22 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
25 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
26 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
27 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
28 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
29 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
30 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
31 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
32 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
33 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
37 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
38 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
39 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
40 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
41 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
42 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
43 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
44 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
45 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
46 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
47 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
48 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
49 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
50 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
51 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
52 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
53 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
77 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
78 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
79 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
80 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
81 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
82 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
83 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
84 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
85 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
86 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
87 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
88 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
89 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
90 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
96 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
97 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
98 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
99 3300049670 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought Metagenome Rhizosphere
100 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
101 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
102 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
103 3300049761 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control Metagenome Rhizosphere
104 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
105 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
106 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
107 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
108 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
109 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
110 2839989709 Pontibacter arcticus 2b14 Isolate Unclassified
111 2881714928 Pseudidiomarina mangrovi ZQ330 Isolate Rhizosphere
112 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
113 2919497567 Shewanella putrefaciens 3469 Isolate Unclassified
114 2919534386 Rheinheimera pacifica 3879 Isolate Unclassified
115 2919688452 Pararheinheimera soli 4138 Isolate Unclassified
116 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
117 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
118 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.38
Metatranscriptomes 0
Isolates 6.62

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.31
Nodule 0
Rhizoplane 1.32
Rhizosphere 84.77
Stem 0
Stem Tuber 0
Unclassified 3.97

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068862_100183675 3300005844 Unclassified 1878
2 JGI24751J29686_10002722 3300002459 Bacteria 3556
3 rootH1_10111757 3300003316 Bacteria 5307
4 rootH2_10195566 3300003320 Bacteria 10054
5 rootL2_10093126 3300003322 Bacteria 4072
6 rootL2_10148080 3300003322 Bacteria 6371
7 rootH1_10008147 3300003323 Bacteria 15080
8 rootH1_10022833 3300003323 Bacteria 7591
9 rootH1_10070677 3300003323 Bacteria 42951
10 Ga0065712_10013900 3300005290 Bacteria 2370
11 Ga0070670_100013336 3300005331 Bacteria 7039
12 Ga0068869_100079095 3300005334 Bacteria 2450
13 Ga0070680_100022956 3300005336 Bacteria 4971
14 Ga0070689_100067952 3300005340 Bacteria 2779
15 Ga0070673_100028133 3300005364 Bacteria 4177
16 Ga0070659_100005169 3300005366 Bacteria 9361
17 Ga0070667_100092674 3300005367 Bacteria 2600
18 Ga0070700_100028066 3300005441 Bacteria 3345
19 Ga0070681_10032447 3300005458 Bacteria 5241
20 Ga0070685_10084267 3300005466 Bacteria 1912
21 Ga0070698_100049563 3300005471 Bacteria 4286
22 Ga0070679_100033145 3300005530 Bacteria 5114
23 Ga0068853_100152417 3300005539 Bacteria 2081
24 Ga0070672_100020293 3300005543 Bacteria 4844
25 Ga0070672_100101282 3300005543 Bacteria 2337
26 Ga0070704_100213308 3300005549 Bacteria 1566
27 Ga0068855_100059428 3300005563 Bacteria 4473
28 Ga0068852_100000631 3300005616 Bacteria 23016
29 Ga0068859_100008915 3300005617 Bacteria 10130
30 Ga0068864_100051898 3300005618 Bacteria 3534
31 Ga0068864_100059396 3300005618 Bacteria 3309
32 Ga0068864_100077433 3300005618 Bacteria 2908
33 Ga0068863_100022541 3300005841 Bacteria 6013
34 Ga0068858_100129301 3300005842 Bacteria 2367
35 Ga0068860_100002052 3300005843 Bacteria 21230
36 Ga0081539_10000252 3300005985 Bacteria 124764
37 Ga0068871_100015237 3300006358 Bacteria 5749
38 Ga0068871_100089788 3300006358 Unclassified 2558
39 Ga0075434_100027880 3300006871 Bacteria 5545
40 Ga0097620_100008915 3300006931 Bacteria 10130
41 Ga0105240_10057199 3300009093 Bacteria 4875
42 Ga0111539_10102504 3300009094 Bacteria 3359
43 Ga0105247_10003665 3300009101 Bacteria 9975
44 Ga0105241_10008097 3300009174 Bacteria 7734
45 Ga0105242_10003722 3300009176 Bacteria 11854
46 Ga0105242_10136586 3300009176 Bacteria 2123
47 Ga0105237_10106785 3300009545 Bacteria 2792
48 Ga0105249_10001743 3300009553 Bacteria 18966
49 Ga0105249_10006167 3300009553 Bacteria 10403
50 Ga0105249_10008515 3300009553 Bacteria 8942
51 Ga0157371_10013571 3300013102 Bacteria 6185
52 Ga0157371_10052269 3300013102 Bacteria 2902
53 Ga0157369_10020531 3300013105 Bacteria 7384
54 Ga0157369_10226963 3300013105 Bacteria 1953
55 Ga0157374_10118742 3300013296 Bacteria 2550
56 Ga0163162_10000118 3300013306 Bacteria 69834
57 Ga0163162_10074720 3300013306 Bacteria 3448
58 Ga0163162_10179465 3300013306 Bacteria 2243
59 Ga0163162_10366018 3300013306 Unclassified 1575
60 Ga0157372_10029023 3300013307 Bacteria 6036
61 Ga0157372_10126119 3300013307 Bacteria 2943
62 Ga0157372_10221648 3300013307 Bacteria 2192
63 Ga0157372_10234726 3300013307 Bacteria 2127
64 Ga0157375_10142995 3300013308 Bacteria 2520
65 Ga0157380_10076431 3300014326 Bacteria 2725
66 Ga0157380_10098546 3300014326 Bacteria 2429
67 Ga0157380_10100385 3300014326 Bacteria 2409
68 Ga0157377_10154729 3300014745 Bacteria 1421
69 Ga0163161_10086321 3300017792 Unclassified 2316
70 Ga0209436_100442 3300025208 Bacteria 18586
71 Ga0209130_1000582 3300025284 Bacteria 35530
72 Ga0207426_1000033 3300025302 Bacteria 455976
73 Ga0207656_10000831 3300025321 Bacteria 10077
74 Ga0207682_10004560 3300025893 Bacteria 5771
75 Ga0207710_10001451 3300025900 Bacteria 11789
76 Ga0207647_10000054 3300025904 Bacteria 86704
77 Ga0207645_10036106 3300025907 Bacteria 3173
78 Ga0207654_10004893 3300025911 Bacteria 6778
79 Ga0207707_10007620 3300025912 Bacteria 9435
80 Ga0207695_10042006 3300025913 Bacteria 4889
81 Ga0207671_10148033 3300025914 Bacteria 1812
82 Ga0207657_10008843 3300025919 Bacteria 10187
83 Ga0207686_10001897 3300025934 Bacteria 11575
84 Ga0207670_10245610 3300025936 Bacteria 1381
85 Ga0207691_10018373 3300025940 Bacteria 6624
86 Ga0207691_10053256 3300025940 Bacteria 3695
87 Ga0207667_10063079 3300025949 Bacteria 3873
88 Ga0207712_10006447 3300025961 Bacteria 7399
89 Ga0207712_10014213 3300025961 Bacteria 5114
90 Ga0207712_10018117 3300025961 Bacteria 4582
91 Ga0207639_10131300 3300026041 Bacteria 2074
92 Ga0207641_10001128 3300026088 Bacteria 26838
93 Ga0207648_10022280 3300026089 Bacteria 5692
94 Ga0207676_10155238 3300026095 Bacteria 1976
95 Ga0207675_100113251 3300026118 Bacteria 2561
96 Ga0207683_10048410 3300026121 Bacteria 3722
97 Ga0268265_10153350 3300028380 Bacteria 1946
98 Ga0268264_10001235 3300028381 Bacteria 24523
99 Ga0307513_10091109 3300031456 Bacteria 3108
100 Ga0307408_100298008 3300031548 Bacteria 1349
101 Ga0307414_10003005 3300032004 Bacteria 8940
102 Ga0307507_10003158 3300033179 Bacteria 32739
103 Ga0395905_0006283 3300037471 Bacteria 11982
104 Ga0451577_0000156 3300042876 Bacteria 151954
105 Ga0451577_0004197 3300042876 Bacteria 15370
106 Ga0451577_0007302 3300042876 Bacteria 10879
107 Ga0451577_0046969 3300042876 Bacteria 3861
108 Ga0451577_0198341 3300042876 Unclassified 1812
109 Ga0466972_0000063 3300044658 Bacteria 105889
110 Ga0453683_0108401 3300044673 Bacteria 1746
111 Ga0453684_0035383 3300044712 Bacteria 6904
112 Ga0453684_0036560 3300044712 Bacteria 6767
113 Ga0453684_0065511 3300044712 Bacteria 4633
114 Ga0453684_0071893 3300044712 Bacteria 4370
115 Ga0466959_0101726 3300045049 Bacteria 2057
116 Ga0451576_0021544 3300045051 Bacteria 7005
117 Ga0495621_0038389 3300046539 Bacteria 1670
118 Ga0496110_0359018 3300048913 Unclassified 1328
119 Ga0496112_0162548 3300048915 Bacteria 2199
120 Ga0501034_0272475 3300049571 Bacteria 1633
121 Ga0501036_0040502 3300049572 Bacteria 3941
122 Ga0501036_0196256 3300049572 Bacteria 1698
123 Ga0501041_0062043 3300049577 Bacteria 2288
124 Ga0501047_0066344 3300049581 Bacteria 3479
125 Ga0501048_0127351 3300049582 Bacteria 1801
126 Ga0501070_0035234 3300049586 Bacteria 4183
127 Ga0501072_0001164 3300049588 Bacteria 19584
128 Ga0501072_0091241 3300049588 Bacteria 2419
129 Ga0501076_0036714 3300049592 Bacteria 3840
130 Ga0501077_0210052 3300049593 Bacteria 1237
131 Ga0501236_003142 3300049670 Bacteria 1917
132 Ga0501257_009644 3300049686 Bacteria 2182
133 Ga0501080_0104295 3300049742 Bacteria 2629
134 Ga0501083_0151438 3300049744 Bacteria 1518
135 Ga0501264_000454 3300049761 Bacteria 6224
136 Ga0501264_001117 3300049761 Bacteria 3137
137 nmdc:mga08y16_2509_c1 3300050511 Bacteria 18877
138 Ga0500644_0009987 3300053088 Bacteria 2556
139 Ga0500616_0000044 3300053153 Bacteria 339611
140 Ga0501084_0006849 3300054114 Bacteria 9381
141 Ga0501082_0148714 3300060353 Bacteria 2034
142 2819676727 2818991460 Bacteria 7595395
143 2839991518 2839989709 Bacteria 3773432
144 2881715767 2881714928 Bacteria 2469486
145 2884796581 2884791551 Bacteria 8511252
146 2919499030 2919497567 Bacteria 4408621
147 2919535539 2919534386 Bacteria 4577686
148 2919688935 2919688452 Bacteria 4595932
149 2929157692 2929154850 Bacteria 6753285
150 2945980246 2945977869 Bacteria 7777518
151 2946013887 2946013367 Bacteria 7766675
152 Ga0068862_100183675
153 JGI24751J29686_10002722
154 rootH1_10111757
155 rootH2_10195566
156 rootL2_10093126
157 rootL2_10148080
158 rootH1_10008147
159 rootH1_10022833
160 rootH1_10070677
161 Ga0065712_10013900
162 Ga0070670_100013336
163 Ga0068869_100079095
164 Ga0070680_100022956
165 Ga0070689_100067952
166 Ga0070673_100028133
167 Ga0070659_100005169
168 Ga0070667_100092674
169 Ga0070700_100028066
170 Ga0070681_10032447
171 Ga0070685_10084267
172 Ga0070698_100049563
173 Ga0070679_100033145
174 Ga0068853_100152417
175 Ga0070672_100020293
176 Ga0070672_100101282
177 Ga0070704_100213308
178 Ga0068855_100059428
179 Ga0068852_100000631
180 Ga0068859_100008915
181 Ga0068864_100051898
182 Ga0068864_100059396
183 Ga0068864_100077433
184 Ga0068863_100022541
185 Ga0068858_100129301
186 Ga0068860_100002052
187 Ga0081539_10000252
188 Ga0068871_100015237
189 Ga0068871_100089788
190 Ga0075434_100027880
191 Ga0097620_100008915
192 Ga0105240_10057199
193 Ga0111539_10102504
194 Ga0105247_10003665
195 Ga0105241_10008097
196 Ga0105242_10003722
197 Ga0105242_10136586
198 Ga0105237_10106785
199 Ga0105249_10001743
200 Ga0105249_10006167
201 Ga0105249_10008515
202 Ga0157371_10013571
203 Ga0157371_10052269
204 Ga0157369_10020531
205 Ga0157369_10226963
206 Ga0157374_10118742
207 Ga0163162_10000118
208 Ga0163162_10074720
209 Ga0163162_10179465
210 Ga0163162_10366018
211 Ga0157372_10029023
212 Ga0157372_10126119
213 Ga0157372_10221648
214 Ga0157372_10234726
215 Ga0157375_10142995
216 Ga0157380_10076431
217 Ga0157380_10098546
218 Ga0157380_10100385
219 Ga0157377_10154729
220 Ga0163161_10086321
221 Ga0209436_100442
222 Ga0209130_1000582
223 Ga0207426_1000033
224 Ga0207656_10000831
225 Ga0207682_10004560
226 Ga0207710_10001451
227 Ga0207647_10000054
228 Ga0207645_10036106
229 Ga0207654_10004893
230 Ga0207707_10007620
231 Ga0207695_10042006
232 Ga0207671_10148033
233 Ga0207657_10008843
234 Ga0207686_10001897
235 Ga0207670_10245610
236 Ga0207691_10018373
237 Ga0207691_10053256
238 Ga0207667_10063079
239 Ga0207712_10006447
240 Ga0207712_10014213
241 Ga0207712_10018117
242 Ga0207639_10131300
243 Ga0207641_10001128
244 Ga0207648_10022280
245 Ga0207676_10155238
246 Ga0207675_100113251
247 Ga0207683_10048410
248 Ga0268265_10153350
249 Ga0268264_10001235
250 Ga0307513_10091109
251 Ga0307408_100298008
252 Ga0307414_10003005
253 Ga0307507_10003158
254 Ga0395905_0006283
255 Ga0451577_0000156
256 Ga0451577_0004197
257 Ga0451577_0007302
258 Ga0451577_0046969
259 Ga0451577_0198341
260 Ga0466972_0000063
261 Ga0453683_0108401
262 Ga0453684_0035383
263 Ga0453684_0036560
264 Ga0453684_0065511
265 Ga0453684_0071893
266 Ga0466959_0101726
267 Ga0451576_0021544
268 Ga0495621_0038389
269 Ga0496110_0359018
270 Ga0496112_0162548
271 Ga0501034_0272475
272 Ga0501036_0040502
273 Ga0501036_0196256
274 Ga0501041_0062043
275 Ga0501047_0066344
276 Ga0501048_0127351
277 Ga0501070_0035234
278 Ga0501072_0001164
279 Ga0501072_0091241
280 Ga0501076_0036714
281 Ga0501077_0210052
282 Ga0501236_003142
283 Ga0501257_009644
284 Ga0501080_0104295
285 Ga0501083_0151438
286 Ga0501264_000454
287 Ga0501264_001117
288 nmdc:mga08y16_2509_c1
289 Ga0500644_0009987
290 Ga0500616_0000044
291 Ga0501084_0006849
292 Ga0501082_0148714
293 2819676727
294 2839991518
295 2881715767
296 2884796581
297 2919499030
298 2919535539
299 2919688935
300 2929157692
301 2945980246
302 2946013887

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13336

AcetylCoA_hyd_C

Acetyl-CoA hydrolase/transferase C-terminal domain

313

465

0.99

PF02550

AcetylCoA_hydro

Acetyl-CoA hydrolase/transferase N-terminal domain

45

224

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
2oas-assembly1.cif.gz_A crystal structure of 4-hydroxybutyrate coenzyme a transferase (atoa) in complex with coa from shewanella oneidensis, northeast structural genomics target sor119. 0.9755 12 430
3qdq-assembly1.cif.gz_A complex between 4-hydroxybutyrate coa-transferase from clostridium aminobutyricum and coa 0.9734 10 428
3d3u-assembly1.cif.gz_A crystal structure of 4-hydroxybutyrate coa-transferase (abft-2) from porphyromonas gingivalis. northeast structural genomics consortium target pgr26 0.9596 10 427
2oas-assembly1.cif.gz_A crystal structure of 4-hydroxybutyrate coenzyme a transferase (atoa) in complex with coa from shewanella oneidensis, northeast structural genomics target sor119. 0.9552 12 430
4n8i-assembly1.cif.gz_A m31g mutant, ripa structure 0.9536 9 429
ID Description Score Start End Superfamily
af_Q9VAC1_47_223_3.40.1080.10 Alpha Beta;3-Layer(aba) Sandwich;Glutaconate Coenzyme A-transferase;Glutaconate Coenzyme A-transferase 0.9748 9 183 3.40.1080.10
3gk7A01 Alpha Beta;3-Layer(aba) Sandwich;Glutaconate Coenzyme A-transferase;Glutaconate Coenzyme A-transferase 0.974 10 183 3.40.1080.10
2oasB01 Alpha Beta;3-Layer(aba) Sandwich;Glutaconate Coenzyme A-transferase;Glutaconate Coenzyme A-transferase 0.9726 12 183 3.40.1080.10
2oasB03 Alpha Beta;3-Layer(aba) Sandwich;Glutaconate Coenzyme A-transferase;Acetyl-CoA hydrolase/transferase C-terminal domain 0.9681 289 430 3.40.1080.20
3d3uA02 Alpha Beta;2-Layer Sandwich;Transcription Regulator spoIIAA;4-hydroxybutyrate coenzyme 0.9669 191 287 3.30.750.70
ID Description Score Start End GO Terms
AF-A0A4Q3R2R6-F1-model_v4 4-hydroxybutyrate CoA-transferase 0.9973 113 430 GO:0006083
GO:0008775
AF-A0A3D4TFF4-F1-model_v4 4-hydroxybutyrate CoA-transferase 0.9947 5 353 GO:0006083
GO:0008775
AF-A0A4Q3QKZ0-F1-model_v4 deleted 0.9946 11 184
AF-A0A7R9FTS8-F1-model_v4 Acetyl-CoA hydrolase 0.9943 158 414 GO:0006083
GO:0006099
GO:0008775
GO:0008924
AF-A0A353FAP6-F1-model_v4 4-hydroxybutyrate CoA-transferase 0.9943 198 430 GO:0006083
GO:0008775

Map