F210930

General Info

Members Datasets Scaffolds Average Seq Length
151 93 302 256

Family's Representative Sequence

Representative Sequence 3300005467|Ga0070706_100135022|Ga0070706_1001350222
Length 281
Sequence VEREKPRAASSRQQATVSLYCFLPSVAMEQRLQKLIAAAGIASRRHAEELITSGQVSVNGGVVTELGSKADPDKDHIKVRGKLINALLQNREKVYVLLNKPRGYLSSVSDPEGRPLVTDLLPPSIGRLYPVGRLDFNTEGLLLLTNDGEFTNFITSARNRVRKVYEAKVKGVPPESAVARLRSGVVLEDGTRTALAGIRRVEETGTNAWFEVILHEGRNQQIRQMFDLVGHSVLKLRRVRIGFLREDNLRPGEWRLLTQNEVERLMRHERKKKFSRKATSW

Samples

Sample ID Description Type Environment
1 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
7 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
8 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
9 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
12 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
13 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
14 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
15 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
16 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
17 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
18 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
19 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
20 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
21 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
22 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
23 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
24 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
25 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
26 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
27 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
28 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
29 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
30 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
31 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
32 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
33 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
34 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
35 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
36 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
37 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
38 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
39 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
41 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
44 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
45 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
46 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
47 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
48 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
49 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
50 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
51 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
52 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
53 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
70 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
72 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
73 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
74 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
75 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
76 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
77 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
78 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
79 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
80 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
81 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
82 3300049521 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought Metagenome Rhizosphere
83 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
85 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
86 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
87 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
88 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
89 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
90 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
91 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
92 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
93 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.66
Nodule 0
Rhizoplane 0
Rhizosphere 96.03
Stem 0
Stem Tuber 0
Unclassified 20.53

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070706_100135022 3300005467 Bacteria 2303
2 JGI25406J46586_10003753 3300003203 Bacteria 7104
3 Ga0065704_10175496 3300005289 Bacteria 1266
4 Ga0065707_10171879 3300005295 Bacteria 1478
5 Ga0070683_100643245 3300005329 Unclassified 1015
6 Ga0070690_100004465 3300005330 Bacteria 7770
7 Ga0068869_100111518 3300005334 Bacteria 2082
8 Ga0070680_100028810 3300005336 Bacteria 4456
9 Ga0070680_100054341 3300005336 Bacteria 3270
10 Ga0070689_100349787 3300005340 Unclassified 1239
11 Ga0070669_100134139 3300005353 Bacteria 1903
12 Ga0070667_100100976 3300005367 Bacteria 2492
13 Ga0070703_10000161 3300005406 Bacteria 33774
14 Ga0070703_10000286 3300005406 Bacteria 23338
15 Ga0070711_100000059 3300005439 Bacteria 65064
16 Ga0070705_100000013 3300005440 Bacteria 99246
17 Ga0070694_100000205 3300005444 Bacteria 31345
18 Ga0070694_100000756 3300005444 Bacteria 18095
19 Ga0070694_100064029 3300005444 Bacteria 2516
20 Ga0070708_100055222 3300005445 Bacteria 3531
21 Ga0070708_100083188 3300005445 Bacteria 2901
22 Ga0070708_100139750 3300005445 Bacteria 2245
23 Ga0070708_100316470 3300005445 Bacteria 1470
24 Ga0070662_100040431 3300005457 Bacteria 3320
25 Ga0070681_10118966 3300005458 Bacteria 2578
26 Ga0068867_100297555 3300005459 Bacteria 1329
27 Ga0068867_100318993 3300005459 Bacteria 1287
28 Ga0070706_100000020 3300005467 Bacteria 165628
29 Ga0070706_100247964 3300005467 Bacteria 1663
30 Ga0070707_100000456 3300005468 Bacteria 40527
31 Ga0070698_100395431 3300005471 Bacteria 1315
32 Ga0070698_100684085 3300005471 Bacteria 968
33 Ga0070698_100806280 3300005471 Viruses 883
34 Ga0070699_100000009 3300005518 Bacteria 272902
35 Ga0070699_100026509 3300005518 Unclassified 4997
36 Ga0070699_100172542 3300005518 Unclassified 1916
37 Ga0070699_100513930 3300005518 Bacteria 1089
38 Ga0070697_100267706 3300005536 Bacteria 1464
39 Ga0070696_100001780 3300005546 Bacteria 14117
40 Ga0070696_100016762 3300005546 Bacteria 4942
41 Ga0070696_100566131 3300005546 Unclassified 912
42 Ga0070693_100009126 3300005547 Bacteria 4923
43 Ga0070693_100474854 3300005547 Unclassified 882
44 Ga0070704_100022782 3300005549 Bacteria 4080
45 Ga0070704_100065732 3300005549 Unclassified 2612
46 Ga0068857_100117986 3300005577 Bacteria 2388
47 Ga0068859_100003994 3300005617 Bacteria 15035
48 Ga0068859_100379740 3300005617 Bacteria 1508
49 Ga0068860_100127591 3300005843 Unclassified 2438
50 Ga0068860_100246793 3300005843 Bacteria 1738
51 Ga0068862_100007677 3300005844 Bacteria 8927
52 Ga0068862_100565299 3300005844 Bacteria 1088
53 Ga0081539_10000022 3300005985 Bacteria 356710
54 Ga0081539_10001791 3300005985 Bacteria 34068
55 Ga0081539_10002488 3300005985 Bacteria 25905
56 Ga0081539_10060121 3300005985 Bacteria 2088
57 Ga0070716_100240362 3300006173 Bacteria 1228
58 Ga0068871_100513543 3300006358 Bacteria 1081
59 Ga0075428_100004524 3300006844 Bacteria 15362
60 Ga0075428_100370993 3300006844 Bacteria 1534
61 Ga0075433_10169225 3300006852 Bacteria 1945
62 Ga0075433_10287356 3300006852 Unclassified 1457
63 Ga0075434_100083157 3300006871 Unclassified 3198
64 Ga0075434_100168422 3300006871 Bacteria 2211
65 Ga0075434_100440627 3300006871 Bacteria 1324
66 Ga0075429_100291010 3300006880 Unclassified 1430
67 Ga0075429_100377586 3300006880 Bacteria 1241
68 Ga0075436_100000289 3300006914 Bacteria 31976
69 Ga0075436_100044434 3300006914 Bacteria 3063
70 Ga0097620_100003994 3300006931 Bacteria 15035
71 Ga0097620_100379768 3300006931 Bacteria 1508
72 Ga0075435_100007037 3300007076 Bacteria 7986
73 Ga0075435_100211594 3300007076 Bacteria 1645
74 Ga0111539_10534079 3300009094 Bacteria 1366
75 Ga0114129_10033523 3300009147 Bacteria 7258
76 Ga0114129_10060498 3300009147 Bacteria 5296
77 Ga0114129_10300836 3300009147 Unclassified 2138
78 Ga0114129_10334781 3300009147 Unclassified 2009
79 Ga0114129_10514051 3300009147 Unclassified 1562
80 Ga0105243_10000747 3300009148 Bacteria 31150
81 Ga0105242_10000261 3300009176 Bacteria 41830
82 Ga0105248_10172180 3300009177 Bacteria 2440
83 Ga0105249_10000270 3300009553 Bacteria 54601
84 Ga0105249_10595012 3300009553 Bacteria 1160
85 Ga0157378_10178407 3300013297 Bacteria 1997
86 Ga0157378_10917802 3300013297 Bacteria 907
87 Ga0163162_10000006 3300013306 Bacteria 410012
88 Ga0157375_10121745 3300013308 Unclassified 2719
89 Ga0157375_10340207 3300013308 Unclassified 1666
90 Ga0157375_10696295 3300013308 Bacteria 1170
91 Ga0163163_10155409 3300014325 Bacteria 2332
92 Ga0157380_10010004 3300014326 Bacteria 6808
93 Ga0157380_10424654 3300014326 Bacteria 1269
94 Ga0157380_10486537 3300014326 Unclassified 1195
95 Ga0213876_10000241 3300021384 Bacteria 52167
96 Ga0213876_10041727 3300021384 Bacteria 2424
97 Ga0207653_10000402 3300025885 Bacteria 18952
98 Ga0207684_10000215 3300025910 Bacteria 89389
99 Ga0207684_10123033 3300025910 Bacteria 2225
100 Ga0207663_10000004 3300025916 Bacteria 294638
101 Ga0207660_10114164 3300025917 Bacteria 2037
102 Ga0207646_10000480 3300025922 Bacteria 53452
103 Ga0207646_10031239 3300025922 Unclassified 4823
104 Ga0207646_10035041 3300025922 Bacteria 4536
105 Ga0207686_10000055 3300025934 Bacteria 107128
106 Ga0207709_10000135 3300025935 Bacteria 107498
107 Ga0207689_10029873 3300025942 Bacteria 4545
108 Ga0207689_10151504 3300025942 Bacteria 1911
109 Ga0207689_10352219 3300025942 Bacteria 1224
110 Ga0207712_10000427 3300025961 Bacteria 35976
111 Ga0207712_10285782 3300025961 Bacteria 1348
112 Ga0207668_10180646 3300025972 Unclassified 1664
113 Ga0207658_10168228 3300025986 Bacteria 1803
114 Ga0207708_10014502 3300026075 Bacteria 5897
115 Ga0207641_10201102 3300026088 Bacteria 1837
116 Ga0207648_10237865 3300026089 Unclassified 1621
117 Ga0207676_10723320 3300026095 Unclassified 966
118 Ga0207674_10635555 3300026116 Bacteria 1031
119 Ga0207428_10005608 3300027907 Bacteria 11668
120 Ga0207428_10080434 3300027907 Bacteria 2546
121 Ga0268264_10325893 3300028381 Bacteria 1454
122 Ga0268264_10866572 3300028381 Bacteria 905
123 Ga0307513_10014639 3300031456 Bacteria 9548
124 Ga0307405_10521709 3300031731 Unclassified 956
125 Ga0307411_10298048 3300032005 Bacteria 1292
126 Ga0395900_0491735 3300037418 Unclassified 1178
127 Ga0395898_0434567 3300037466 Unclassified 1251
128 Ga0395905_0042955 3300037471 Unclassified 4241
129 Ga0436365_1125551 3300039437 Bacteria 52249
130 Ga0436365_1553320 3300039437 Bacteria 3521
131 Ga0453683_0089416 3300044673 Bacteria 1930
132 Ga0453683_0192664 3300044673 Unclassified 1294
133 Ga0495632_0026377 3300046519 Bacteria 3059
134 Ga0495645_0133738 3300046543 Bacteria 1736
135 Ga0495659_0027803 3300046664 Bacteria 1953
136 Ga0501298_009558 3300049521 Bacteria 1653
137 Ga0501046_0537765 3300049580 Unclassified 834
138 Ga0501072_0373972 3300049588 Unclassified 1131
139 nmdc:mga05p37_121_c1 3300050507 Bacteria 70179
140 nmdc:mga05p37_311019_c1 3300050507 Unclassified 1867
141 nmdc:mga09592_476270_c1 3300050508 Bacteria 1076
142 nmdc:mga08y16_19195_c1 3300050511 Bacteria 7203
143 nmdc:mga08y16_60146_c1 3300050511 Bacteria 3969
144 nmdc:mga0n895_177460_c1 3300050512 Unclassified 2161
145 nmdc:mga0rr50_4778_c1 3300050513 Bacteria 7994
146 nmdc:mga08x19_101_c1 3300050514 Bacteria 75974
147 nmdc:mga08x19_5_c1 3300050514 Bacteria 464292
148 nmdc:mga0a205_24414_c1 3300050515 Bacteria 5748
149 nmdc:mga0a205_97208_c1 3300050515 Bacteria 2843
150 Ga0495601_0066107 3300053077 Unclassified 2302
151 Ga0500616_0023165 3300053153 Bacteria 3460
152 Ga0070706_100135022
153 JGI25406J46586_10003753
154 Ga0065704_10175496
155 Ga0065707_10171879
156 Ga0070683_100643245
157 Ga0070690_100004465
158 Ga0068869_100111518
159 Ga0070680_100028810
160 Ga0070680_100054341
161 Ga0070689_100349787
162 Ga0070669_100134139
163 Ga0070667_100100976
164 Ga0070703_10000161
165 Ga0070703_10000286
166 Ga0070711_100000059
167 Ga0070705_100000013
168 Ga0070694_100000205
169 Ga0070694_100000756
170 Ga0070694_100064029
171 Ga0070708_100055222
172 Ga0070708_100083188
173 Ga0070708_100139750
174 Ga0070708_100316470
175 Ga0070662_100040431
176 Ga0070681_10118966
177 Ga0068867_100297555
178 Ga0068867_100318993
179 Ga0070706_100000020
180 Ga0070706_100247964
181 Ga0070707_100000456
182 Ga0070698_100395431
183 Ga0070698_100684085
184 Ga0070698_100806280
185 Ga0070699_100000009
186 Ga0070699_100026509
187 Ga0070699_100172542
188 Ga0070699_100513930
189 Ga0070697_100267706
190 Ga0070696_100001780
191 Ga0070696_100016762
192 Ga0070696_100566131
193 Ga0070693_100009126
194 Ga0070693_100474854
195 Ga0070704_100022782
196 Ga0070704_100065732
197 Ga0068857_100117986
198 Ga0068859_100003994
199 Ga0068859_100379740
200 Ga0068860_100127591
201 Ga0068860_100246793
202 Ga0068862_100007677
203 Ga0068862_100565299
204 Ga0081539_10000022
205 Ga0081539_10001791
206 Ga0081539_10002488
207 Ga0081539_10060121
208 Ga0070716_100240362
209 Ga0068871_100513543
210 Ga0075428_100004524
211 Ga0075428_100370993
212 Ga0075433_10169225
213 Ga0075433_10287356
214 Ga0075434_100083157
215 Ga0075434_100168422
216 Ga0075434_100440627
217 Ga0075429_100291010
218 Ga0075429_100377586
219 Ga0075436_100000289
220 Ga0075436_100044434
221 Ga0097620_100003994
222 Ga0097620_100379768
223 Ga0075435_100007037
224 Ga0075435_100211594
225 Ga0111539_10534079
226 Ga0114129_10033523
227 Ga0114129_10060498
228 Ga0114129_10300836
229 Ga0114129_10334781
230 Ga0114129_10514051
231 Ga0105243_10000747
232 Ga0105242_10000261
233 Ga0105248_10172180
234 Ga0105249_10000270
235 Ga0105249_10595012
236 Ga0157378_10178407
237 Ga0157378_10917802
238 Ga0163162_10000006
239 Ga0157375_10121745
240 Ga0157375_10340207
241 Ga0157375_10696295
242 Ga0163163_10155409
243 Ga0157380_10010004
244 Ga0157380_10424654
245 Ga0157380_10486537
246 Ga0213876_10000241
247 Ga0213876_10041727
248 Ga0207653_10000402
249 Ga0207684_10000215
250 Ga0207684_10123033
251 Ga0207663_10000004
252 Ga0207660_10114164
253 Ga0207646_10000480
254 Ga0207646_10031239
255 Ga0207646_10035041
256 Ga0207686_10000055
257 Ga0207709_10000135
258 Ga0207689_10029873
259 Ga0207689_10151504
260 Ga0207689_10352219
261 Ga0207712_10000427
262 Ga0207712_10285782
263 Ga0207668_10180646
264 Ga0207658_10168228
265 Ga0207708_10014502
266 Ga0207641_10201102
267 Ga0207648_10237865
268 Ga0207676_10723320
269 Ga0207674_10635555
270 Ga0207428_10005608
271 Ga0207428_10080434
272 Ga0268264_10325893
273 Ga0268264_10866572
274 Ga0307513_10014639
275 Ga0307405_10521709
276 Ga0307411_10298048
277 Ga0395900_0491735
278 Ga0395898_0434567
279 Ga0395905_0042955
280 Ga0436365_1125551
281 Ga0436365_1553320
282 Ga0453683_0089416
283 Ga0453683_0192664
284 Ga0495632_0026377
285 Ga0495645_0133738
286 Ga0495659_0027803
287 Ga0501298_009558
288 Ga0501046_0537765
289 Ga0501072_0373972
290 nmdc:mga05p37_121_c1
291 nmdc:mga05p37_311019_c1
292 nmdc:mga09592_476270_c1
293 nmdc:mga08y16_19195_c1
294 nmdc:mga08y16_60146_c1
295 nmdc:mga0n895_177460_c1
296 nmdc:mga0rr50_4778_c1
297 nmdc:mga08x19_101_c1
298 nmdc:mga08x19_5_c1
299 nmdc:mga0a205_24414_c1
300 nmdc:mga0a205_97208_c1
301 Ga0495601_0066107
302 Ga0500616_0023165

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01479

S4

S4 domain

30

76

0.93

PF00849

PseudoU_synth_2

RNA pseudouridylate synthase

94

228

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
3dh3-assembly4.cif.gz_D crystal structure of rluf in complex with a 22 nucleotide rna substrate 0.9236 1 240
4lgt-assembly2.cif.gz_D crystal structure of the catalytic domain of rlub in complex with a 21-nucleotide rna substrate 0.9159 1 242
8d8l-assembly1.cif.gz_D yeast mitochondrial small subunit assembly intermediate (state 3) 0.9159 4 52
4lgt-assembly2.cif.gz_D crystal structure of the catalytic domain of rlub in complex with a 21-nucleotide rna substrate 0.8947 1 242
4lgt-assembly1.cif.gz_A crystal structure of the catalytic domain of rlub in complex with a 21-nucleotide rna substrate 0.8932 1 242
ID Description Score Start End Superfamily
af_P9WHQ1_10_70_3.10.290.10 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.9727 1 56 3.10.290.10
af_A0A1D6JNZ0_152_214_3.10.290.10 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.9626 2 55 3.10.290.10
af_Q2FY78_1_58_3.10.290.10 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.9516 1 53 3.10.290.10
af_Q2FXH7_1_58_3.10.290.10 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.9402 3 56 3.10.290.10
af_Q2FY78_59_131_3.30.70.580 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9264 64 130 3.30.70.580
ID Description Score Start End GO Terms
AF-A0A7W0MFB8-F1-model_v4 Pseudouridine synthase (EC 5.4.99.-) 0.9765 1 237 GO:0000455
GO:0003723
GO:0120159
AF-A0A3N5P0X9-F1-model_v4 rRNA pseudouridine synthase 0.9681 107 242 GO:0001522
GO:0003723
GO:0006396
GO:0009982
GO:0140098
AF-A0A091C9C2-F1-model_v4 Pseudouridine synthase (EC 5.4.99.-) 0.9617 104 239 GO:0001522
GO:0003723
GO:0006364
GO:0009982
GO:0016829
GO:0140098
AF-A0A1V2YG89-F1-model_v4 Pseudouridine synthase 0.9606 3 237 GO:0000455
GO:0003723
GO:0120159
AF-A0A7C5LIJ1-F1-model_v4 Pseudouridine synthase (EC 5.4.99.-) 0.9603 1 239 GO:0000455
GO:0003723
GO:0120159

Map