F210036

General Info

Members Datasets Scaffolds Average Seq Length
150 100 301 693

Family's Representative Sequence

Representative Sequence 3300053096|Ga0500641_0000031|Ga0500641_0000031_42432_44588
Length 718
Sequence MAKLKEDKLVFLFQSDSITTISKKIMKKYLMAFLLTISQITVKAQSASSYFPDKNLVTTGIYYYPEQWNENQWERDIKKIADMGFEFVHLAEFAWYKMEPEEGKFDFAWLDKVVDLCVKNKLKVLMCTPSATTPTWMRVNYPETFIMESHYIRAENGTRGLGSITNSKYREFVERIVTEMAKRYGKNKNIIGWQLDNEPPAISDYSPSSQEAFRQWLKNKYKTVDTLNAVWGTAFWSQWFNSFDQVIIPNPNLVGWWGNNPHALLDFKRYQADSQAEFLDLQATILRKSILEGQYITTNYTAICTGADPRRTTKMDFATYTAYPNGGTDNIGDLGFRLGNSKVVLFAAEYYKSVGGVSGVMEMQPGPVNWGSYNPLLMPGTVRMWLYHSFAAGGKLACSYRFRQVLYSSEQYHAGVMQTDGVTPSAGGEDYIQFIKEIKELRKQYKPNAKMPEKLAERSTAILWNLENFWSVERQKQTFQWDTWNYPVKFLEMAKSLGAPIAVIPETADFSKYKFLIVPAYELADSALVKKWNDYVANGGHLIITCRTATKNRAGHFWEGEWAAPISELIGAYVKSTDMLSGSAKGDVSMKSSHYNWNNWADLLEANKGTEVLATYDNQFYKGKAAVVQRKIGKGTVTYIGVDTDDSKLEKDILREIYAKAGATTEDYPEGIYVYWRDGFYMAVNYSSDNYTMNVPVNAKVLVGEKTLKPAGVLVWSE

Samples

Sample ID Description Type Environment
1 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
2 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
3 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
4 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
8 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
11 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
12 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
13 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
14 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
15 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
16 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
17 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
18 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
19 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
20 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
21 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
22 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
23 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
24 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
25 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
26 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
27 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
28 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
29 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
30 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
31 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
32 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
33 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
34 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
35 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
37 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
38 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
39 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
51 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
52 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
53 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
54 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
55 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
56 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
57 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
58 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
59 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
60 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
61 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
62 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
63 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
64 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
65 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
66 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
67 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
68 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
69 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
70 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
71 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
72 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
73 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
74 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
75 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
76 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
77 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
78 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
79 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
80 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
81 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
82 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
83 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
84 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
85 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
86 2738541283 Pedobacter sp. OK701 Isolate Unclassified
87 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
88 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
89 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
90 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
91 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
92 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
93 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
94 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
95 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
96 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
97 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
98 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
99 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified
100 8054307821 Flavobacterium soyae SCIV07 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 88.67
Metatranscriptomes 0
Isolates 11.33

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.33
Nodule 0
Rhizoplane 0.67
Rhizosphere 75.33
Stem 0
Stem Tuber 0
Unclassified 2

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500641_0000031 3300053096 Bacteria 94272
2 JGI25162J39368_1000005 3300002737 Bacteria 435925
3 JGI25153J46596_10005086 3300003215 Bacteria 6950
4 rootH1_10054843 3300003316 Bacteria 18743
5 rootL2_10072538 3300003322 Bacteria 4887
6 rootL2_10072539 3300003322 Bacteria 12511
7 rootH1_10079890 3300003316 Bacteria 1591
8 rootH1_10079890 3300003323 Bacteria 7857
9 Ga0065714_10004589 3300005288 Bacteria 10199
10 Ga0070666_10003895 3300005335 Bacteria 9061
11 Ga0070671_100055120 3300005355 Bacteria 3307
12 Ga0068853_100002665 3300005539 Bacteria 13454
13 Ga0070665_100000006 3300005548 Bacteria 718034
14 Ga0068857_100011222 3300005577 Bacteria 7791
15 Ga0068854_100043492 3300005578 Bacteria 3184
16 Ga0068856_100018523 3300005614 Bacteria 6747
17 Ga0068852_100002725 3300005616 Bacteria 12215
18 Ga0068859_100000887 3300005617 Bacteria 30479
19 Ga0068860_100000026 3300005843 Bacteria 270483
20 Ga0068860_100007930 3300005843 Bacteria 10596
21 Ga0075366_10000500 3300006195 Bacteria 18172
22 Ga0097620_100000887 3300006931 Bacteria 30479
23 Ga0105240_10000491 3300009093 Bacteria 73081
24 Ga0105240_10000658 3300009093 Bacteria 63681
25 Ga0105240_10002374 3300009093 Bacteria 30350
26 Ga0105240_10002564 3300009093 Bacteria 29130
27 Ga0105241_10002128 3300009174 Bacteria 14976
28 Ga0105241_10028424 3300009174 Bacteria 4168
29 Ga0105237_10000347 3300009545 Bacteria 65298
30 Ga0105237_10000879 3300009545 Bacteria 40656
31 Ga0105237_10005701 3300009545 Bacteria 13999
32 Ga0105237_10007811 3300009545 Bacteria 11660
33 Ga0105237_10050523 3300009545 Bacteria 4178
34 Ga0105238_10001873 3300009551 Bacteria 21093
35 Ga0105239_10000032 3300010375 Bacteria 225528
36 Ga0105239_10000036 3300010375 Bacteria 212090
37 Ga0105239_10003332 3300010375 Bacteria 19772
38 Ga0105239_10003459 3300010375 Bacteria 19321
39 Ga0105239_10003865 3300010375 Bacteria 18176
40 Ga0105239_10005144 3300010375 Bacteria 15449
41 Ga0105239_10086302 3300010375 Bacteria 3459
42 Ga0157373_10000013 3300013100 Bacteria 186870
43 Ga0163162_10000219 3300013306 Bacteria 52440
44 Ga0157372_10001012 3300013307 Bacteria 30752
45 Ga0157372_10002341 3300013307 Bacteria 20515
46 Ga0157372_10013876 3300013307 Bacteria 8606
47 Ga0157375_10001109 3300013308 Bacteria 23352
48 Ga0182008_10004065 3300014497 Bacteria 8634
49 Ga0182007_10000010 3300015262 Bacteria 286070
50 Ga0163161_10000175 3300017792 Bacteria 59064
51 Ga0163161_10000946 3300017792 Bacteria 22358
52 Ga0163161_10001120 3300017792 Bacteria 20217
53 Ga0209437_100043 3300025233 Bacteria 440454
54 Ga0209646_1000045 3300025246 Bacteria 333765
55 Ga0209026_1000241 3300025250 Bacteria 70485
56 Ga0209455_1002219 3300025272 Bacteria 7666
57 Ga0209564_1001876 3300025295 Bacteria 18952
58 Ga0209758_1003742 3300025297 Bacteria 13473
59 Ga0207426_1000203 3300025302 Bacteria 142379
60 Ga0207426_1002688 3300025302 Bacteria 10866
61 Ga0207680_10002099 3300025903 Bacteria 9341
62 Ga0207654_10006018 3300025911 Bacteria 6098
63 Ga0207695_10000043 3300025913 Bacteria 444585
64 Ga0207695_10001185 3300025913 Bacteria 44997
65 Ga0207695_10044747 3300025913 Bacteria 4706
66 Ga0207695_10059941 3300025913 Bacteria 3944
67 Ga0207671_10000792 3300025914 Bacteria 40046
68 Ga0207671_10003042 3300025914 Bacteria 17163
69 Ga0207671_10006530 3300025914 Bacteria 10366
70 Ga0207671_10019038 3300025914 Bacteria 5259
71 Ga0207644_10020213 3300025931 Bacteria 4525
72 Ga0207667_10000748 3300025949 Bacteria 42218
73 Ga0207639_10016231 3300026041 Bacteria 5263
74 Ga0207639_10047334 3300026041 Bacteria 3250
75 Ga0207641_10013142 3300026088 Bacteria 6788
76 Ga0207674_10000903 3300026116 Bacteria 38688
77 Ga0207674_10018659 3300026116 Bacteria 7534
78 Ga0268266_10000010 3300028379 Bacteria 1030233
79 Ga0268264_10000117 3300028381 Bacteria 195037
80 Ga0307515_10000311 3300028794 Bacteria 120044
81 Ga0307515_10000349 3300028794 Bacteria 114163
82 Ga0265327_10000193 3300031251 Bacteria 129367
83 Ga0307408_100001913 3300031548 Bacteria 15131
84 Ga0307408_100011903 3300031548 Bacteria 5756
85 Ga0307405_10000013 3300031731 Bacteria 227563
86 Ga0307407_10000046 3300031903 Bacteria 59303
87 Ga0307412_10038467 3300031911 Unclassified 3081
88 Ga0307416_100000011 3300032002 Bacteria 300622
89 Ga0307414_10000512 3300032004 Bacteria 20189
90 Ga0307414_10009200 3300032004 Bacteria 5661
91 Ga0451843_0238580 3300041509 Bacteria 2583
92 Ga0451577_0000285 3300042876 Bacteria 98289
93 Ga0451577_0141372 3300042876 Bacteria 2163
94 Ga0466969_0001295 3300044656 Bacteria 13472
95 Ga0453683_0000101 3300044673 Bacteria 128396
96 Ga0453683_0000261 3300044673 Bacteria 69377
97 Ga0466966_0001866 3300044684 Bacteria 13666
98 Ga0453684_0000558 3300044712 Bacteria 140560
99 Ga0453684_0001568 3300044712 Bacteria 63367
100 Ga0453684_0002011 3300044712 Bacteria 52058
101 Ga0453684_0002617 3300044712 Bacteria 43014
102 Ga0453684_0005423 3300044712 Bacteria 25268
103 Ga0453684_0007078 3300044712 Bacteria 20942
104 Ga0453684_0018828 3300044712 Bacteria 10565
105 Ga0453684_0021092 3300044712 Bacteria 9762
106 Ga0453684_0059425 3300044712 Bacteria 4928
107 Ga0453684_0076509 3300044712 Bacteria 4201
108 Ga0453684_0098266 3300044712 Unclassified 3590
109 Ga0466957_0013773 3300044842 Bacteria 4698
110 Ga0466959_0000033 3300045049 Bacteria 109901
111 Ga0451576_0000420 3300045051 Bacteria 98309
112 Ga0451576_0001616 3300045051 Bacteria 37797
113 Ga0451576_0038636 3300045051 Bacteria 5052
114 Ga0495585_0000246 3300046492 Bacteria 56090
115 Ga0495616_0006687 3300046513 Bacteria 6958
116 Ga0495648_0002274 3300046524 Bacteria 17933
117 Ga0495633_0000023 3300046558 Bacteria 226510
118 Ga0495668_0000012 3300046616 Bacteria 458817
119 Ga0495611_0000182 3300046648 Bacteria 44769
120 Ga0495625_0000003 3300046660 Bacteria 686847
121 Ga0495625_0003889 3300046660 Bacteria 14407
122 Ga0495625_0019897 3300046660 Bacteria 5194
123 Ga0495649_0000002 3300046694 Bacteria 1093458
124 Ga0495687_000026 3300047443 Bacteria 301190
125 Ga0495687_005197 3300047443 Bacteria 8406
126 Ga0496115_0107116 3300048918 Bacteria 2295
127 Ga0496122_0000596 3300048925 Bacteria 74357
128 Ga0501223_000609 3300049663 Bacteria 8593
129 Ga0501249_000001 3300049679 Bacteria 268580
130 Ga0501249_000012 3300049679 Bacteria 153759
131 nmdc:mga0k408_127_c1 3300050493 Bacteria 37804
132 Ga0500618_000009 3300053125 Bacteria 209970
133 Ga0500622_0023197 3300053156 Unclassified 3288
134 Ga0500624_000287 3300053157 Bacteria 17432
135 2644370682 2643221667 Bacteria 5627472
136 2738734375 2738541279 Bacteria 6149495
137 2738755092 2738541283 Bacteria 7222293
138 2738767133 2738541285 Bacteria 6150075
139 2739215956 2738543007 Bacteria 6149845
140 2842723155 2842722452 Bacteria 6263924
141 2842914109 2842909656 Bacteria 6185908
142 2884793928 2884791551 Bacteria 8511252
143 2919442456 2919437846 Bacteria 6199444
144 2929152290 2929150217 Bacteria 5462483
145 2929183076 2929177148 Bacteria 7883697
146 2929924061 2929921140 Bacteria 8649150
147 2945979033 2945977869 Bacteria 7777518
148 2946001922 2945997725 Bacteria 6404843
149 2946015105 2946013367 Bacteria 7766675
150 8003154897 8003151029 Bacteria 8187759
151 8054311190 8054307821 Bacteria 5212224
152 Ga0500641_0000031
153 JGI25162J39368_1000005
154 JGI25153J46596_10005086
155 rootH1_10054843
156 rootL2_10072538
157 rootL2_10072539
158 rootH1_10079890
159 Ga0065714_10004589
160 Ga0070666_10003895
161 Ga0070671_100055120
162 Ga0068853_100002665
163 Ga0070665_100000006
164 Ga0068857_100011222
165 Ga0068854_100043492
166 Ga0068856_100018523
167 Ga0068852_100002725
168 Ga0068859_100000887
169 Ga0068860_100000026
170 Ga0068860_100007930
171 Ga0075366_10000500
172 Ga0097620_100000887
173 Ga0105240_10000491
174 Ga0105240_10000658
175 Ga0105240_10002374
176 Ga0105240_10002564
177 Ga0105241_10002128
178 Ga0105241_10028424
179 Ga0105237_10000347
180 Ga0105237_10000879
181 Ga0105237_10005701
182 Ga0105237_10007811
183 Ga0105237_10050523
184 Ga0105238_10001873
185 Ga0105239_10000032
186 Ga0105239_10000036
187 Ga0105239_10003332
188 Ga0105239_10003459
189 Ga0105239_10003865
190 Ga0105239_10005144
191 Ga0105239_10086302
192 Ga0157373_10000013
193 Ga0163162_10000219
194 Ga0157372_10001012
195 Ga0157372_10002341
196 Ga0157372_10013876
197 Ga0157375_10001109
198 Ga0182008_10004065
199 Ga0182007_10000010
200 Ga0163161_10000175
201 Ga0163161_10000946
202 Ga0163161_10001120
203 Ga0209437_100043
204 Ga0209646_1000045
205 Ga0209026_1000241
206 Ga0209455_1002219
207 Ga0209564_1001876
208 Ga0209758_1003742
209 Ga0207426_1000203
210 Ga0207426_1002688
211 Ga0207680_10002099
212 Ga0207654_10006018
213 Ga0207695_10000043
214 Ga0207695_10001185
215 Ga0207695_10044747
216 Ga0207695_10059941
217 Ga0207671_10000792
218 Ga0207671_10003042
219 Ga0207671_10006530
220 Ga0207671_10019038
221 Ga0207644_10020213
222 Ga0207667_10000748
223 Ga0207639_10016231
224 Ga0207639_10047334
225 Ga0207641_10013142
226 Ga0207674_10000903
227 Ga0207674_10018659
228 Ga0268266_10000010
229 Ga0268264_10000117
230 Ga0307515_10000311
231 Ga0307515_10000349
232 Ga0265327_10000193
233 Ga0307408_100001913
234 Ga0307408_100011903
235 Ga0307405_10000013
236 Ga0307407_10000046
237 Ga0307412_10038467
238 Ga0307416_100000011
239 Ga0307414_10000512
240 Ga0307414_10009200
241 Ga0451843_0238580
242 Ga0451577_0000285
243 Ga0451577_0141372
244 Ga0466969_0001295
245 Ga0453683_0000101
246 Ga0453683_0000261
247 Ga0466966_0001866
248 Ga0453684_0000558
249 Ga0453684_0001568
250 Ga0453684_0002011
251 Ga0453684_0002617
252 Ga0453684_0005423
253 Ga0453684_0007078
254 Ga0453684_0018828
255 Ga0453684_0021092
256 Ga0453684_0059425
257 Ga0453684_0076509
258 Ga0453684_0098266
259 Ga0466957_0013773
260 Ga0466959_0000033
261 Ga0451576_0000420
262 Ga0451576_0001616
263 Ga0451576_0038636
264 Ga0495585_0000246
265 Ga0495616_0006687
266 Ga0495648_0002274
267 Ga0495633_0000023
268 Ga0495668_0000012
269 Ga0495611_0000182
270 Ga0495625_0000003
271 Ga0495625_0003889
272 Ga0495625_0019897
273 Ga0495649_0000002
274 Ga0495687_000026
275 Ga0495687_005197
276 Ga0496115_0107116
277 Ga0496122_0000596
278 Ga0501223_000609
279 Ga0501249_000001
280 Ga0501249_000012
281 nmdc:mga0k408_127_c1
282 Ga0500618_000009
283 Ga0500622_0023197
284 Ga0500624_000287
285 2644370682
286 2738734375
287 2738755092
288 2738767133
289 2739215956
290 2842723155
291 2842914109
292 2884793928
293 2919442456
294 2929152290
295 2929183076
296 2929924061
297 2945979033
298 2946001922
299 2946015105
300 8003154897
301 8054311190

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02449

Glyco_hydro_42

Beta-galactosidase

62

441

0.96

PF08533

Glyco_hydro_42C

Beta-galactosidase C-terminal domain

676

718

0.95

PF08532

Glyco_hydro_42M

Beta-galactosidase trimerisation domain

458

666

0.94

PF00150

Cellulase

Cellulase (glycosyl hydrolase family 5)

51

268

0.69

Structural Annotation

Top 5 Hits

ID Description Score Start End
6lvw-assembly1.cif.gz_A polyextremophilic beta-galactosidase from the antarctic haloarchaeon halorubrum lacusprofundi 0.909 53 714
6lvw-assembly1.cif.gz_A polyextremophilic beta-galactosidase from the antarctic haloarchaeon halorubrum lacusprofundi 0.8989 53 714
5e9a-assembly1.cif.gz_A error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.8919 53 714
6y2k-assembly1.cif.gz_A crystal structure of beta-galactosidase from the psychrophilic marinomonas ef1 0.8914 53 714
6y2k-assembly1.cif.gz_A crystal structure of beta-galactosidase from the psychrophilic marinomonas ef1 0.8888 53 714
ID Description Score Start End Superfamily
5e9aB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.9179 455 656 3.40.50.880
5dfaC02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.9161 446 656 3.40.50.880
1kwkA03 Mainly Beta;Sandwich;Immunoglobulin-like;Golgi alpha-mannosidase II 0.9039 665 714 2.60.40.1180
3ttyC02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.9026 452 660 3.40.50.880
1kwkA01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.888 54 437 3.20.20.80
ID Description Score Start End GO Terms
AF-R7L0E1-F1-model_v4 deleted 0.9688 491 714
AF-A0A7J5P9D0-F1-model_v4 Beta-galactosidase 0.9628 520 714 GO:0004565
GO:0006012
AF-A0A1V5G430-F1-model_v4 deleted 0.9622 469 714
AF-R7L0E1-F1-model_v4 deleted 0.9604 491 714
AF-W7Y826-F1-model_v4 Beta-galactosidase (Beta-gal) (EC 3.2.1.23) 0.9595 53 714 GO:0004565
GO:0005975
GO:0009341

Map