F209946

General Info

Members Datasets Scaffolds Average Seq Length
150 119 150 252

Family's Representative Sequence

Representative Sequence 3300049665|Ga0501227_006745|Ga0501227_006745_1183_2097
Length 299
Sequence VARTPSAEYLILDIETIPDVERWKRPDVTQPTAPGAEQAAAVARSGSAGPRSAESMIAQAAPTAALASAPAGKPDRAGFPPTWAHRIVVIGCLWLDHGYKLKRLGVVGDPTGGEGSPDQRERALLEDFSRFVGKARPVLVTYNGRSFDLPVIAMRSLCHGISLGWYYKERNVRYRYSEEGHLDLCDWLADHGATRSGSLDAVARLIGLPGKIGVDGSQVEGLYQAGQLADIQKYCLADVAQTALLFLRFRLLQGVLSPDRYHEAASGLLDALAADGRVGSVLEGTDRAHLIGPAPAPTS

Samples

Sample ID Description Type Environment
1 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
2 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
3 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
8 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
9 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
10 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
11 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
12 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
17 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
22 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
23 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
26 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
27 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
29 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
30 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
31 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
32 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
34 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
35 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
36 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
37 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
38 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
39 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
40 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
64 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
65 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
66 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
67 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
68 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
69 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
70 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
71 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
72 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
73 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
74 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
75 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
76 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
77 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
78 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
79 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
80 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
81 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
82 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
83 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
84 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
85 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
86 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
87 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
88 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
89 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
90 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
91 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
92 3300049522 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C24_B_7_control Metagenome Rhizosphere
93 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
95 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
96 3300049660 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D2_B_0_control Metagenome Rhizosphere
97 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
98 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
99 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
100 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
101 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
102 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
103 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
104 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
105 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
106 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
107 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
108 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
109 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
110 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
111 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
112 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
113 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
114 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
115 3300053144 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 endosphere Metagenome Endosphere
116 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
117 3300053159 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 endosphere Metagenome Endosphere
118 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
119 3300053737 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.67
Nodule 0
Rhizoplane 1.33
Rhizosphere 78
Stem 0
Stem Tuber 0
Unclassified 8

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070683_100051601 3300005329 Bacteria 3809
2 Ga0070683_100238332 3300005329 Bacteria 1730
3 Ga0070690_100153234 3300005330 Bacteria 1574
4 Ga0068869_100067611 3300005334 Bacteria 2637
5 Ga0070680_100156678 3300005336 Bacteria 1914
6 Ga0068868_100175511 3300005338 Bacteria 1776
7 Ga0070689_100093189 3300005340 Unclassified 2377
8 Ga0070687_100140649 3300005343 Unclassified 1405
9 Ga0070674_100297391 3300005356 Bacteria 1286
10 Ga0070688_100116474 3300005365 Unclassified 1784
11 Ga0070701_10115057 3300005438 Bacteria 1508
12 Ga0070694_100107646 3300005444 Bacteria 1981
13 Ga0070678_100008257 3300005456 Bacteria 6230
14 Ga0070681_10326994 3300005458 Bacteria 1443
15 Ga0070698_100006368 3300005471 Bacteria 12814
16 Ga0070679_100008493 3300005530 Bacteria 9674
17 Ga0070679_100011173 3300005530 Bacteria 8555
18 Ga0070679_100030506 3300005530 Bacteria 5322
19 Ga0070684_100017150 3300005535 Bacteria 5935
20 Ga0070686_100015838 3300005544 Bacteria 4377
21 Ga0070665_100006956 3300005548 Bacteria 11499
22 Ga0070704_100102543 3300005549 Bacteria 2159
23 Ga0068855_100178614 3300005563 Bacteria 2401
24 Ga0068855_100608150 3300005563 Bacteria 1178
25 Ga0068857_100118645 3300005577 Bacteria 2381
26 Ga0068856_100054620 3300005614 Bacteria 3940
27 Ga0068856_100169114 3300005614 Bacteria 2198
28 Ga0068863_100019331 3300005841 Bacteria 6514
29 Ga0068860_100243071 3300005843 Bacteria 1751
30 Ga0068860_100438663 3300005843 Bacteria 1297
31 Ga0068862_100530777 3300005844 Bacteria 1121
32 Ga0070717_10004833 3300006028 Bacteria 9805
33 Ga0097621_100422148 3300006237 Unclassified 1197
34 Ga0068871_100211103 3300006358 Bacteria 1679
35 Ga0075429_100036016 3300006880 Bacteria 4304
36 Ga0068865_100058983 3300006881 Bacteria 2683
37 Ga0075435_100263396 3300007076 Bacteria 1469
38 Ga0111539_10007983 3300009094 Bacteria 13499
39 Ga0111539_10826301 3300009094 Bacteria 1078
40 Ga0105245_10002258 3300009098 Bacteria 17444
41 Ga0105243_10257744 3300009148 Bacteria 1560
42 Ga0105238_10479858 3300009551 Bacteria 1242
43 Ga0105249_10057029 3300009553 Bacteria 3577
44 Ga0105249_10382143 3300009553 Bacteria 1434
45 Ga0157374_10060057 3300013296 Bacteria 3557
46 Ga0157372_10587137 3300013307 Bacteria 1299
47 Ga0157376_10009749 3300014969 Bacteria 6994
48 Ga0157376_10222003 3300014969 Bacteria 1751
49 Ga0207684_10082453 3300025910 Bacteria 2739
50 Ga0207707_10144117 3300025912 Bacteria 2082
51 Ga0207707_10252306 3300025912 Bacteria 1532
52 Ga0207707_10445532 3300025912 Unclassified 1108
53 Ga0207660_10070867 3300025917 Bacteria 2535
54 Ga0207662_10176557 3300025918 Unclassified 1373
55 Ga0207652_10051937 3300025921 Bacteria 3516
56 Ga0207652_10059887 3300025921 Bacteria 3283
57 Ga0207652_10066298 3300025921 Bacteria 3129
58 Ga0207652_10147681 3300025921 Bacteria 2104
59 Ga0207652_10698623 3300025921 Unclassified 905
60 Ga0207687_10001046 3300025927 Bacteria 18820
61 Ga0207670_10071100 3300025936 Unclassified 2405
62 Ga0207669_10170520 3300025937 Bacteria 1548
63 Ga0207704_10093419 3300025938 Bacteria 1983
64 Ga0207665_10400954 3300025939 Bacteria 1045
65 Ga0207689_10107774 3300025942 Bacteria 2289
66 Ga0207661_10012067 3300025944 Bacteria 6278
67 Ga0207667_10123774 3300025949 Bacteria 2664
68 Ga0207712_10466109 3300025961 Bacteria 1074
69 Ga0207677_10423490 3300026023 Bacteria 1134
70 Ga0207702_10130184 3300026078 Bacteria 2263
71 Ga0207702_10467044 3300026078 Archaea 1226
72 Ga0207702_10730676 3300026078 Bacteria 977
73 Ga0207641_10064288 3300026088 Bacteria 3136
74 Ga0207674_10344733 3300026116 Unclassified 1440
75 Ga0207674_10394749 3300026116 Unclassified 1337
76 Ga0207675_100183220 3300026118 Bacteria 2006
77 Ga0207683_10002991 3300026121 Bacteria 14760
78 Ga0207683_10075829 3300026121 Bacteria 2977
79 Ga0268266_10208956 3300028379 Bacteria 1789
80 Ga0268265_10242677 3300028380 Bacteria 1591
81 Ga0268264_10252903 3300028381 Bacteria 1638
82 Ga0307515_10012879 3300028794 Bacteria 15689
83 Ga0265338_10030190 3300028800 Bacteria 5349
84 Ga0265338_10114364 3300028800 Bacteria 2166
85 Ga0307513_10014367 3300031456 Bacteria 9665
86 Ga0307513_10133029 3300031456 Bacteria 2428
87 Ga0307509_10000045 3300031507 Bacteria 174921
88 Ga0307509_10003486 3300031507 Bacteria 23783
89 Ga0307509_10041606 3300031507 Bacteria 4985
90 Ga0307508_10018937 3300031616 Bacteria 6255
91 Ga0307508_10257908 3300031616 Bacteria 1339
92 Ga0307516_10023596 3300031730 Bacteria 6300
93 Ga0307516_10104287 3300031730 Bacteria 2648
94 Ga0307405_10445856 3300031731 Bacteria 1025
95 Ga0307406_10003516 3300031901 Bacteria 8538
96 Ga0307415_100233874 3300032126 Bacteria 1482
97 Ga0373949_0000550 3300035090 Bacteria 12343
98 Ga0373936_0000005 3300035113 Bacteria 325848
99 Ga0373957_0137261 3300035120 Bacteria 998
100 Ga0373960_0135821 3300035121 Bacteria 829
101 Ga0373943_0028095 3300035170 Bacteria 2649
102 Ga0373955_0234954 3300035172 Unclassified 1097
103 Ga0373961_0000021 3300035241 Bacteria 100265
104 Ga0373933_0161234 3300035724 Bacteria 1424
105 Ga0395905_0319239 3300037471 Bacteria 1443
106 Ga0395905_0455132 3300037471 Bacteria 1178
107 Ga0436363_0858730 3300039450 Bacteria 2043
108 Ga0451851_0816323 3300041507 Bacteria 758
109 Ga0495629_0220697 3300046459 Bacteria 1308
110 Ga0495650_0073945 3300046471 Bacteria 1330
111 Ga0495667_0376328 3300046559 Unclassified 896
112 Ga0495599_0077308 3300046678 Bacteria 2078
113 Ga0495623_0187630 3300046679 Unclassified 1197
114 Ga0495613_0017305 3300046689 Bacteria 5372
115 Ga0495686_0043317 3300047472 Bacteria 2854
116 Ga0496112_0019783 3300048915 Bacteria 6366
117 Ga0496114_0119999 3300048917 Bacteria 2261
118 Ga0501299_005852 3300049522 Bacteria 1907
119 Ga0501047_0439678 3300049581 Bacteria 1134
120 Ga0501073_0188426 3300049589 Bacteria 1427
121 Ga0501202_020503 3300049652 Unclassified 1314
122 Ga0501216_025791 3300049660 Unclassified 1058
123 Ga0501227_006745 3300049665 Bacteria 2462
124 Ga0501227_036364 3300049665 Bacteria 1201
125 Ga0501035_0467489 3300049822 Unclassified 1042
126 nmdc:mga09592_31040_c1 3300050508 Bacteria 4451
127 nmdc:mga08y16_286304_c1 3300050511 Bacteria 1699
128 nmdc:mga0rr50_62184_c1 3300050513 Bacteria 2815
129 nmdc:mga08x19_105438_c1 3300050514 Bacteria 1874
130 Ga0500635_0119460 3300053080 Unclassified 986
131 Ga0500635_0123417 3300053080 Bacteria 971
132 Ga0495595_0256812 3300053084 Bacteria 876
133 Ga0495619_0166032 3300053085 Bacteria 1526
134 Ga0500646_0026103 3300053090 Unclassified 1582
135 Ga0500566_0008073 3300053094 Bacteria 6230
136 Ga0500566_0028077 3300053094 Bacteria 3290
137 Ga0500566_0028584 3300053094 Bacteria 3258
138 Ga0500640_000057 3300053095 Bacteria 17662
139 Ga0500554_000830 3300053102 Bacteria 6074
140 Ga0500595_000060 3300053119 Bacteria 79275
141 Ga0500608_121583 3300053122 Bacteria 1183
142 Ga0500614_000824 3300053123 Bacteria 7825
143 Ga0500614_007745 3300053123 Bacteria 2268
144 Ga0500559_0015857 3300053136 Bacteria 3181
145 Ga0500568_0017343 3300053139 Bacteria 3180
146 Ga0500585_006866 3300053144 Bacteria 3059
147 Ga0500603_004486 3300053150 Bacteria 2989
148 Ga0500630_029635 3300053159 Bacteria 2693
149 Ga0500636_0132530 3300053177 Bacteria 1387
150 Ga0500601_005184 3300053737 Bacteria 1426

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300050513 nmdc:mga0rr50_62184_c1 nmdc:mga0rr50_62184_c1_562_1167 199
2 3300009094 Ga0111539_10007983 Ga0111539_1000798310 206
3 3300009551 Ga0105238_10479858 Ga0105238_104798582 221
4 3300005329 Ga0070683_100238332 Ga0070683_1002383323 231
5 3300006237 Ga0097621_100422148 Ga0097621_1004221482 231
6 3300006358 Ga0068871_100211103 Ga0068871_1002111032 232
7 3300025961 Ga0207712_10466109 Ga0207712_104661092 234
8 3300028381 Ga0268264_10252903 Ga0268264_102529032 234
9 3300005530 Ga0070679_100030506 Ga0070679_1000305066 235
10 3300005577 Ga0068857_100118645 Ga0068857_1001186451 235
11 3300005614 Ga0068856_100054620 Ga0068856_1000546203 235
12 3300009098 Ga0105245_10002258 Ga0105245_100022584 235
13 3300014969 Ga0157376_10009749 Ga0157376_100097492 235
14 3300025921 Ga0207652_10147681 Ga0207652_101476811 235
15 3300025927 Ga0207687_10001046 Ga0207687_100010469 235
16 3300026078 Ga0207702_10467044 Ga0207702_104670442 235
17 3300026116 Ga0207674_10344733 Ga0207674_103447332 235
18 3300028800 Ga0265338_10114364 Ga0265338_101143642 235
19 3300039450 Ga0436363_0858730 Ga0436363_0858730_314_1069 235
20 3300005548 Ga0070665_100006956 Ga0070665_10000695611 236
21 3300005563 Ga0068855_100608150 Ga0068855_1006081502 236
22 3300014969 Ga0157376_10222003 Ga0157376_102220033 236
23 3300028379 Ga0268266_10208956 Ga0268266_102089562 236
24 3300031507 Ga0307509_10003486 Ga0307509_1000348616 236
25 3300046471 Ga0495650_0073945 Ga0495650_0073945_247_990 236
26 3300009094 Ga0111539_10826301 Ga0111539_108263011 237
27 3300048917 Ga0496114_0119999 Ga0496114_0119999_1097_1846 237
28 3300005336 Ga0070680_100156678 Ga0070680_1001566783 238
29 3300005444 Ga0070694_100107646 Ga0070694_1001076462 238
30 3300005458 Ga0070681_10326994 Ga0070681_103269942 238
31 3300005530 Ga0070679_100008493 Ga0070679_1000084936 238
32 3300005530 Ga0070679_100011173 Ga0070679_1000111738 238
33 3300005843 Ga0068860_100243071 Ga0068860_1002430711 238
34 3300007076 Ga0075435_100263396 Ga0075435_1002633961 238
35 3300025912 Ga0207707_10144117 Ga0207707_101441172 238
36 3300025912 Ga0207707_10252306 Ga0207707_102523062 238
37 3300025912 Ga0207707_10445532 Ga0207707_104455322 238
38 3300025917 Ga0207660_10070867 Ga0207660_100708672 238
39 3300025921 Ga0207652_10059887 Ga0207652_100598872 238
40 3300025921 Ga0207652_10066298 Ga0207652_100662984 238
41 3300025921 Ga0207652_10698623 Ga0207652_106986232 238
42 3300035241 Ga0373961_0000021 Ga0373961_0000021_74943_75866 238
43 3300046459 Ga0495629_0220697 Ga0495629_0220697_335_1051 238
44 3300046678 Ga0495599_0077308 Ga0495599_0077308_1069_1785 238
45 3300046689 Ga0495613_0017305 Ga0495613_0017305_4036_4752 238
46 3300050511 nmdc:mga08y16_286304_c1 nmdc:mga08y16_286304_c1_852_1583 238
47 3300053084 Ga0495595_0256812 Ga0495595_0256812_13_729 238
48 3300053085 Ga0495619_0166032 Ga0495619_0166032_433_1152 238
49 3300005330 Ga0070690_100153234 Ga0070690_1001532342 239
50 3300005549 Ga0070704_100102543 Ga0070704_1001025431 239
51 3300009553 Ga0105249_10057029 Ga0105249_100570293 239
52 3300031456 Ga0307513_10014367 Ga0307513_100143678 239
53 3300031456 Ga0307513_10133029 Ga0307513_101330292 239
54 3300031730 Ga0307516_10023596 Ga0307516_100235963 239
55 3300031730 Ga0307516_10104287 Ga0307516_101042872 239
56 3300035120 Ga0373957_0137261 Ga0373957_0137261_15_734 239
57 3300035121 Ga0373960_0135821 Ga0373960_0135821_35_793 239
58 3300041507 Ga0451851_0816323 Ga0451851_0816323_29_748 239
59 3300047472 Ga0495686_0043317 Ga0495686_0043317_1539_2294 239
60 3300053090 Ga0500646_0026103 Ga0500646_0026103_589_1362 239
61 3300053094 Ga0500566_0008073 Ga0500566_0008073_4092_4862 239
62 3300053095 Ga0500640_000057 Ga0500640_000057_10184_10954 239
63 3300053102 Ga0500554_000830 Ga0500554_000830_2639_3409 239
64 3300053119 Ga0500595_000060 Ga0500595_000060_61330_62100 239
65 3300053122 Ga0500608_121583 Ga0500608_121583_51_821 239
66 3300053123 Ga0500614_000824 Ga0500614_000824_1453_2223 239
67 3300053136 Ga0500559_0015857 Ga0500559_0015857_633_1403 239
68 3300053177 Ga0500636_0132530 Ga0500636_0132530_57_827 239
69 3300053737 Ga0500601_005184 Ga0500601_005184_465_1235 239
70 3300005356 Ga0070674_100297391 Ga0070674_1002973912 240
71 3300005456 Ga0070678_100008257 Ga0070678_1000082572 240
72 3300013296 Ga0157374_10060057 Ga0157374_100600573 240
73 3300025937 Ga0207669_10170520 Ga0207669_101705202 240
74 3300026121 Ga0207683_10002991 Ga0207683_1000299113 240
75 3300031507 Ga0307509_10000045 Ga0307509_1000004516 240
76 3300032126 Ga0307415_100233874 Ga0307415_1002338742 240
77 3300037471 Ga0395905_0319239 Ga0395905_0319239_455_1213 240
78 3300049581 Ga0501047_0439678 Ga0501047_0439678_112_870 240
79 3300049589 Ga0501073_0188426 Ga0501073_0188426_567_1325 240
80 3300049822 Ga0501035_0467489 Ga0501035_0467489_10_768 240
81 3300053080 Ga0500635_0123417 Ga0500635_0123417_99_857 240
82 3300053094 Ga0500566_0028584 Ga0500566_0028584_954_1712 240
83 3300053144 Ga0500585_006866 Ga0500585_006866_1044_1802 240
84 3300005471 Ga0070698_100006368 Ga0070698_1000063682 241
85 3300009553 Ga0105249_10382143 Ga0105249_103821432 241
86 3300025939 Ga0207665_10400954 Ga0207665_104009542 241
87 3300028800 Ga0265338_10030190 Ga0265338_100301902 241
88 3300031507 Ga0307509_10041606 Ga0307509_100416062 241
89 3300049522 Ga0501299_005852 Ga0501299_005852_382_1185 241
90 3300049652 Ga0501202_020503 Ga0501202_020503_420_1223 241
91 3300049660 Ga0501216_025791 Ga0501216_025791_174_977 241
92 3300049665 Ga0501227_036364 Ga0501227_036364_231_1034 241
93 3300050514 nmdc:mga08x19_105438_c1 nmdc:mga08x19_105438_c1_888_1685 241
94 3300005340 Ga0070689_100093189 Ga0070689_1000931892 242
95 3300005365 Ga0070688_100116474 Ga0070688_1001164742 242
96 3300025910 Ga0207684_10082453 Ga0207684_100824532 242
97 3300025936 Ga0207670_10071100 Ga0207670_100711002 242
98 3300031731 Ga0307405_10445856 Ga0307405_104458561 242
99 3300037471 Ga0395905_0455132 Ga0395905_0455132_277_1062 242
100 3300005334 Ga0068869_100067611 Ga0068869_1000676112 243
101 3300005841 Ga0068863_100019331 Ga0068863_1000193316 243
102 3300005843 Ga0068860_100438663 Ga0068860_1004386632 243
103 3300005844 Ga0068862_100530777 Ga0068862_1005307772 243
104 3300006028 Ga0070717_10004833 Ga0070717_100048336 243
105 3300006880 Ga0075429_100036016 Ga0075429_1000360165 243
106 3300009148 Ga0105243_10257744 Ga0105243_102577441 243
107 3300025942 Ga0207689_10107774 Ga0207689_101077742 243
108 3300026088 Ga0207641_10064288 Ga0207641_100642881 243
109 3300026118 Ga0207675_100183220 Ga0207675_1001832201 243
110 3300028380 Ga0268265_10242677 Ga0268265_102426771 243
111 3300031616 Ga0307508_10257908 Ga0307508_102579082 243
112 3300031901 Ga0307406_10003516 Ga0307406_100035166 243
113 3300049665 Ga0501227_006745 Ga0501227_006745_1183_2097 243
114 3300050508 nmdc:mga09592_31040_c1 nmdc:mga09592_31040_c1_2632_3387 243
115 3300053139 Ga0500568_0017343 Ga0500568_0017343_1528_2316 243
116 3300005338 Ga0068868_100175511 Ga0068868_1001755112 244
117 3300026023 Ga0207677_10423490 Ga0207677_104234902 244
118 3300035113 Ga0373936_0000005 Ga0373936_0000005_267070_267870 244
119 3300005343 Ga0070687_100140649 Ga0070687_1001406492 245
120 3300025918 Ga0207662_10176557 Ga0207662_101765572 245
121 3300028794 Ga0307515_10012879 Ga0307515_100128799 245
122 3300053080 Ga0500635_0119460 Ga0500635_0119460_82_909 245
123 3300053094 Ga0500566_0028077 Ga0500566_0028077_564_1364 245
124 3300053123 Ga0500614_007745 Ga0500614_007745_1057_1884 245
125 3300005329 Ga0070683_100051601 Ga0070683_1000516014 246
126 3300005438 Ga0070701_10115057 Ga0070701_101150572 246
127 3300005535 Ga0070684_100017150 Ga0070684_1000171504 246
128 3300005544 Ga0070686_100015838 Ga0070686_1000158383 246
129 3300005563 Ga0068855_100178614 Ga0068855_1001786142 246
130 3300005614 Ga0068856_100169114 Ga0068856_1001691143 246
131 3300006881 Ga0068865_100058983 Ga0068865_1000589832 246
132 3300013307 Ga0157372_10587137 Ga0157372_105871372 246
133 3300025921 Ga0207652_10051937 Ga0207652_100519373 246
134 3300025938 Ga0207704_10093419 Ga0207704_100934192 246
135 3300025944 Ga0207661_10012067 Ga0207661_100120674 246
136 3300025949 Ga0207667_10123774 Ga0207667_101237742 246
137 3300026078 Ga0207702_10130184 Ga0207702_101301843 246
138 3300026078 Ga0207702_10730676 Ga0207702_107306762 246
139 3300026116 Ga0207674_10394749 Ga0207674_103947492 246
140 3300026121 Ga0207683_10075829 Ga0207683_100758294 246
141 3300031616 Ga0307508_10018937 Ga0307508_100189376 246
142 3300035090 Ga0373949_0000550 Ga0373949_0000550_5089_5946 246
143 3300035170 Ga0373943_0028095 Ga0373943_0028095_671_1420 246
144 3300035172 Ga0373955_0234954 Ga0373955_0234954_258_1007 246
145 3300035724 Ga0373933_0161234 Ga0373933_0161234_37_786 246
146 3300046559 Ga0495667_0376328 Ga0495667_0376328_118_867 246
147 3300046679 Ga0495623_0187630 Ga0495623_0187630_409_1158 246
148 3300048915 Ga0496112_0019783 Ga0496112_0019783_5257_5997 246
149 3300053150 Ga0500603_004486 Ga0500603_004486_2092_2898 246
150 3300053159 Ga0500630_029635 Ga0500630_029635_293_1150 246

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF10108

DNA_pol_B_exo2

Predicted 3'-5' exonuclease related to the exonuclease domain of PolB

77

284

0.94

PF13482

RNase_H_2

RNase_H superfamily

82

249

0.78

PF03104

DNA_pol_B_exo1

DNA polymerase family B, exonuclease domain

116

202

0.76

Structural Annotation

Top 5 Hits

ID Description Score Start End
5mdn-assembly2.cif.gz_B structure of the family b dna polymerase from the hyperthermophilic archaeon pyrobaculum calidifontis 0.6688 3 227
8b6k-assembly1.cif.gz_A error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.6532 1 188
5h12-assembly1.cif.gz_A crystal structure of deep vent dna polymerase 0.6427 1 238
8b79-assembly1.cif.gz_A the crystal structure of m644g variant of dna pol epsilon containing utp in the polymerase active site 0.6389 1 222
8b79-assembly2.cif.gz_B the crystal structure of m644g variant of dna pol epsilon containing utp in the polymerase active site 0.6355 1 222
ID Description Score Start End Superfamily
af_Q57811_1_166_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.7753 4 187 3.30.420.10
af_Q57811_1_166_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.7452 4 187 3.30.420.10
5h12A02 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.6851 1 227 3.30.420.10
af_O62218_254_453_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.6829 5 189 3.30.420.10
5h12A02 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.6735 1 227 3.30.420.10
ID Description Score Start End GO Terms
AF-D0LGE4-F1-model_v4 3'-5' exonuclease, PolB-like protein 0.958 2 236 GO:0003676
GO:0004527
AF-A0A4Q3JXT9-F1-model_v4 Predicted 3'-5' exonuclease PolB-like domain-containing protein 0.9397 2 239 GO:0003676
AF-A0A350K8L4-F1-model_v4 deleted 0.9318 32 230
AF-D0LGE4-F1-model_v4 3'-5' exonuclease, PolB-like protein 0.9309 2 236 GO:0003676
GO:0004527
AF-A0A1V5XN83-F1-model_v4 DNA polymerase II 0.9265 1 237 GO:0003676

Feature Viewer

pLDDT pTM Quality
87.43 0.88 High
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Predicted Structure (AlphaFold2)

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