F209559

General Info

Members Datasets Scaffolds Average Seq Length
150 110 300 910

Family's Representative Sequence

Representative Sequence 3300045051|Ga0451576_0000708|Ga0451576_0000708_16442_19810
Length 1072
Sequence MSWQVEFRAGVWLPQVGWWLDAHFPVERSFVSHAHSDHTALHREVLCSAGTSALMQARLPGKRTEHVLSFGQTERLTSACAITLHPAGHIFGSAQSLLEHADHGRLLYTGDFKLRRGLSAEPCATPGTDLLIMETTFGRPHYVFPPTEQVLRDIAHFCHETIANGEVPVLFGYSLGKSQELLSGLAAAQLPVMLHPQTHKLTLVYERCGISFPPHREFDAAEVAGHVVICPPQSRDSAFVRRIPRARTAVITGWAIDPGAIYRYQCDAAFPLSDHADFPDLLRYVELVQPKRVLTLHGFAQEFAGTLRERGIEAWAIGQDNQLELGIAASRPTPAAAMTEPTAFLQFAVVADAVKATPSKLEKVAALRDYLAALPPEDAATAATFFTGRAFPQRDPRNLNLGWAVIKRAVLEVAGVTEADYRAAYHRYADAGDASGAVLAQRPRDADSRGGDLGSRDVSTEPSATQSEIARAGAERTGFPEELSPAAARESAAGRGCSLGDVAAFFRDAAAARGPLAKLQLLTERLTILSPDEARYLIKIITGDLRIGLKEGLLEEAVAAASGQPLDAVREANMLCGDIAAVMRAARRDELASIQLTVFHPLQFMLASPEPTAEAILARMREAAAPDEPPASSPEPSLTGHDRAAGDAAGGTGGVPCTAEISARDEGVASPGSGGEREVPGRTGAVRAASAPEREKGTAPPPADPRPLSRQQAVTVWLEEKYDGIRCQLHKAGTRVELYSRDLNRITEQFPDLVRAAADIPGDFIGDGELLAWRDGRALPFAELQKRLGRKGDDFFLGEEIPVSISFYDLLWLNGRALLKQPLSTRGKEPRTLPADRSAPIPPRAHDAGAPAGSTLEVGSSGPAAWTQRFRVAPVRHATTADEIEAAFIAARQRGNEGLMAKDPRSFYTPGRRGLAWLKLKKAYATLDVVVVGVEYGHGKRRDVLSDYTFAIRDTEHDRLLTVGKAYSGLTDAEIARLTQHFLEHTLEERGRYRVVVPDTVIEVGFDIIQPSTRHQSGFALRFPRIARLRPDKTPADIDTLDTCRRLAAAGSFAPAEGDAAADRATRPMDPA

Samples

Sample ID Description Type Environment
1 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
2 3300000545 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNX_Illumina_Assembled Metagenome Rhizosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
7 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
8 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
9 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
10 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
11 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
14 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
17 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
18 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
19 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
20 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
21 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
22 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
23 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
24 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
25 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
26 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
27 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
28 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
29 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
30 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
31 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
32 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
33 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
34 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
35 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
37 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
40 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
41 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
42 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
43 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
44 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
45 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
46 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
47 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
70 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
71 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
72 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
73 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
74 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
75 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
76 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
77 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
78 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
79 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
80 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
81 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
82 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
83 3300042130 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030L_E14_070516_97 Metagenome Rhizosphere
84 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
85 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
86 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
87 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
88 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
89 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
90 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
91 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
92 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
93 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
94 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
95 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
96 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
97 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
98 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
99 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
100 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
101 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
102 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
103 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
106 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
107 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
109 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
110 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.67
Nodule 0
Rhizoplane 4
Rhizosphere 91.33
Stem 0
Stem Tuber 0
Unclassified 7.33

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0451576_0000708 3300045051 Bacteria 67318
2 CNXas_1000025 3300000545 Bacteria 31086
3 JGI25406J46586_10000011 3300003203 Bacteria 104720
4 rootH2_10102419 3300003320 Bacteria 12837
5 rootL2_10063421 3300003322 Bacteria 15107
6 Ga0065712_10000641 3300005290 Bacteria 13387
7 Ga0065715_10001901 3300005293 Bacteria 5423
8 Ga0065715_10002198 3300005293 Bacteria 10225
9 Ga0070676_10004452 3300005328 Bacteria 7373
10 Ga0070683_100014398 3300005329 Bacteria 6917
11 Ga0070683_100020294 3300005329 Bacteria 5913
12 Ga0070689_100003710 3300005340 Bacteria 10213
13 Ga0070661_100010424 3300005344 Bacteria 6462
14 Ga0070675_100004884 3300005354 Bacteria 10228
15 Ga0070675_100006611 3300005354 Bacteria 8911
16 Ga0070671_100011608 3300005355 Archaea 7086
17 Ga0070671_100024168 3300005355 Bacteria 4973
18 Ga0070671_100046082 3300005355 Bacteria 3626
19 Ga0070674_100040845 3300005356 Bacteria 3140
20 Ga0070673_100001593 3300005364 Bacteria 13396
21 Ga0070673_100025720 3300005364 Bacteria 4337
22 Ga0070688_100002461 3300005365 Bacteria 9360
23 Ga0070659_100023420 3300005366 Unclassified 4725
24 Ga0070667_100002420 3300005367 Bacteria 16331
25 Ga0070711_100007806 3300005439 Bacteria 6519
26 Ga0070678_100025834 3300005456 Bacteria 3960
27 Ga0070681_10005188 3300005458 Bacteria 12572
28 Ga0068867_100004770 3300005459 Bacteria 9548
29 Ga0070706_100000116 3300005467 Bacteria 97606
30 Ga0070706_100022719 3300005467 Bacteria 5777
31 Ga0070707_100001914 3300005468 Bacteria 19954
32 Ga0070707_100009712 3300005468 Bacteria 8943
33 Ga0070707_100032665 3300005468 Unclassified 4959
34 Ga0070698_100001128 3300005471 Bacteria 29519
35 Ga0070698_100002754 3300005471 Bacteria 19325
36 Ga0070698_100014571 3300005471 Bacteria 8303
37 Ga0070684_100004688 3300005535 Bacteria 10439
38 Ga0070697_100000885 3300005536 Bacteria 22519
39 Ga0070697_100001611 3300005536 Bacteria 17211
40 Ga0070697_100003783 3300005536 Bacteria 11618
41 Ga0070697_100052644 3300005536 Bacteria 3308
42 Ga0070672_100027924 3300005543 Bacteria 4215
43 Ga0070686_100014260 3300005544 Unclassified 4578
44 Ga0068857_100004493 3300005577 Bacteria 11788
45 Ga0068857_100005267 3300005577 Bacteria 11012
46 Ga0081455_10001384 3300005937 Bacteria 29929
47 Ga0081455_10002878 3300005937 Bacteria 20255
48 Ga0081540_1000010 3300005983 Bacteria 193206
49 Ga0081539_10000139 3300005985 Bacteria 170623
50 Ga0070717_10000624 3300006028 Bacteria 22766
51 Ga0070717_10013427 3300006028 Bacteria 6278
52 Ga0070717_10018051 3300006028 Bacteria 5503
53 Ga0097621_100014453 3300006237 Bacteria 5907
54 Ga0068871_100028293 3300006358 Bacteria 4393
55 Ga0075431_100006538 3300006847 Bacteria 11577
56 Ga0105240_10000768 3300009093 Bacteria 58257
57 Ga0105242_10007619 3300009176 Bacteria 8334
58 Ga0157374_10052734 3300013296 Bacteria 3789
59 Ga0157378_10009471 3300013297 Bacteria 8486
60 Ga0163162_10005533 3300013306 Bacteria 12212
61 Ga0163162_10069084 3300013306 Bacteria 3585
62 Ga0157375_10075040 3300013308 Bacteria 3405
63 Ga0163163_10018433 3300014325 Bacteria 6535
64 Ga0163163_10029893 3300014325 Bacteria 5243
65 Ga0157376_10002170 3300014969 Bacteria 13217
66 Ga0157376_10018997 3300014969 Bacteria 5286
67 Ga0213876_10000122 3300021384 Bacteria 84684
68 Ga0209050_1000928 3300025298 Bacteria 38478
69 Ga0207697_10000265 3300025315 Bacteria 28907
70 Ga0207697_10000479 3300025315 Bacteria 22589
71 Ga0207697_10002161 3300025315 Bacteria 10297
72 Ga0207697_10002287 3300025315 Bacteria 10009
73 Ga0207688_10007399 3300025901 Bacteria 5979
74 Ga0207680_10009671 3300025903 Bacteria 4793
75 Ga0207645_10001870 3300025907 Bacteria 16994
76 Ga0207645_10004679 3300025907 Bacteria 10072
77 Ga0207684_10000190 3300025910 Bacteria 97762
78 Ga0207684_10002366 3300025910 Bacteria 19090
79 Ga0207684_10014076 3300025910 Bacteria 6907
80 Ga0207695_10000552 3300025913 Bacteria 77065
81 Ga0207693_10003611 3300025915 Bacteria 13209
82 Ga0207693_10015715 3300025915 Bacteria 6065
83 Ga0207663_10005273 3300025916 Bacteria 6507
84 Ga0207662_10003513 3300025918 Bacteria 8077
85 Ga0207646_10000248 3300025922 Bacteria 73450
86 Ga0207646_10001113 3300025922 Bacteria 34274
87 Ga0207646_10011797 3300025922 Bacteria 8441
88 Ga0207646_10033325 3300025922 Unclassified 4660
89 Ga0207681_10014694 3300025923 Unclassified 4874
90 Ga0207681_10033376 3300025923 Bacteria 3374
91 Ga0207659_10007029 3300025926 Bacteria 6912
92 Ga0207700_10009571 3300025928 Bacteria 6066
93 Ga0207706_10000611 3300025933 Bacteria 37952
94 Ga0207691_10000956 3300025940 Bacteria 28622
95 Ga0207661_10013622 3300025944 Bacteria 5938
96 Ga0207702_10000141 3300026078 Bacteria 85910
97 Ga0207648_10003405 3300026089 Bacteria 16690
98 Ga0207674_10002184 3300026116 Bacteria 24751
99 Ga0207683_10004760 3300026121 Bacteria 11686
100 Ga0268266_10003380 3300028379 Bacteria 15973
101 Ga0268266_10003997 3300028379 Bacteria 14273
102 Ga0265327_10002501 3300031251 Bacteria 19213
103 Ga0307408_100000021 3300031548 Bacteria 312158
104 Ga0307408_100001887 3300031548 Bacteria 15268
105 Ga0307508_10000551 3300031616 Bacteria 44445
106 Ga0307406_10000089 3300031901 Bacteria 52532
107 Ga0307412_10000013 3300031911 Bacteria 365239
108 Ga0307409_100000812 3300031995 Bacteria 14319
109 Ga0307414_10000036 3300032004 Bacteria 166533
110 Ga0373935_0023374 3300035692 Unclassified 3799
111 Ga0373947_0023558 3300035725 Unclassified 3583
112 Ga0373925_0003040 3300037068 Bacteria 13200
113 Ga0436365_1416355 3300039437 Bacteria 117881
114 Ga0436360_1020628 3300039438 Bacteria 6504
115 Ga0436360_1145226 3300039438 Bacteria 4456
116 Ga0436361_1207236 3300039447 Bacteria 8702
117 Ga0436363_1238758 3300039450 Bacteria 3650
118 Ga0450892_000007 3300042130 Bacteria 21217
119 Ga0450893_0000266 3300042532 Bacteria 7099
120 Ga0451577_0000012 3300042876 Bacteria 575467
121 Ga0453683_0002792 3300044673 Bacteria 13286
122 Ga0453684_0006551 3300044712 Bacteria 22049
123 Ga0453684_0018492 3300044712 Bacteria 10691
124 Ga0451576_0005374 3300045051 Bacteria 16098
125 Ga0451576_0017942 3300045051 Bacteria 7769
126 Ga0495592_0006437 3300046454 Bacteria 8743
127 Ga0495641_0020425 3300046461 Bacteria 3358
128 Ga0495630_0005913 3300046517 Bacteria 8651
129 Ga0495640_0038909 3300046533 Unclassified 3342
130 Ga0495587_0005040 3300046536 Bacteria 8644
131 Ga0495634_0014835 3300046642 Bacteria 5603
132 Ga0495658_0007363 3300046683 Bacteria 5442
133 Ga0495613_0007920 3300046689 Bacteria 7905
134 Ga0495674_0008948 3300047319 Bacteria 9515
135 Ga0495602_0037873 3300048088 Bacteria 4467
136 Ga0496108_0023057 3300048911 Bacteria 5121
137 Ga0496109_0001244 3300048912 Bacteria 21112
138 Ga0496109_0032598 3300048912 Unclassified 4684
139 Ga0496112_0005836 3300048915 Bacteria 10720
140 Ga0496113_0046097 3300048916 Unclassified 3236
141 Ga0496115_0006815 3300048918 Bacteria 8382
142 Ga0501032_0000093 3300049569 Bacteria 76932
143 Ga0501046_0030010 3300049580 Bacteria 4416
144 Ga0501227_000743 3300049665 Bacteria 7130
145 Ga0501083_0002547 3300049744 Bacteria 12518
146 Ga0501083_0009528 3300049744 Bacteria 6861
147 Ga0501035_0003295 3300049822 Bacteria 15478
148 Ga0501044_0000050 3300049823 Bacteria 143754
149 nmdc:mga06r32_44025_c1 3300050510 Unclassified 4249
150 Ga0495601_0012001 3300053077 Bacteria 5191
151 Ga0451576_0000708
152 CNXas_1000025
153 JGI25406J46586_10000011
154 rootH2_10102419
155 rootL2_10063421
156 Ga0065712_10000641
157 Ga0065715_10001901
158 Ga0065715_10002198
159 Ga0070676_10004452
160 Ga0070683_100014398
161 Ga0070683_100020294
162 Ga0070689_100003710
163 Ga0070661_100010424
164 Ga0070675_100004884
165 Ga0070675_100006611
166 Ga0070671_100011608
167 Ga0070671_100024168
168 Ga0070671_100046082
169 Ga0070674_100040845
170 Ga0070673_100001593
171 Ga0070673_100025720
172 Ga0070688_100002461
173 Ga0070659_100023420
174 Ga0070667_100002420
175 Ga0070711_100007806
176 Ga0070678_100025834
177 Ga0070681_10005188
178 Ga0068867_100004770
179 Ga0070706_100000116
180 Ga0070706_100022719
181 Ga0070707_100001914
182 Ga0070707_100009712
183 Ga0070707_100032665
184 Ga0070698_100001128
185 Ga0070698_100002754
186 Ga0070698_100014571
187 Ga0070684_100004688
188 Ga0070697_100000885
189 Ga0070697_100001611
190 Ga0070697_100003783
191 Ga0070697_100052644
192 Ga0070672_100027924
193 Ga0070686_100014260
194 Ga0068857_100004493
195 Ga0068857_100005267
196 Ga0081455_10001384
197 Ga0081455_10002878
198 Ga0081540_1000010
199 Ga0081539_10000139
200 Ga0070717_10000624
201 Ga0070717_10013427
202 Ga0070717_10018051
203 Ga0097621_100014453
204 Ga0068871_100028293
205 Ga0075431_100006538
206 Ga0105240_10000768
207 Ga0105242_10007619
208 Ga0157374_10052734
209 Ga0157378_10009471
210 Ga0163162_10005533
211 Ga0163162_10069084
212 Ga0157375_10075040
213 Ga0163163_10018433
214 Ga0163163_10029893
215 Ga0157376_10002170
216 Ga0157376_10018997
217 Ga0213876_10000122
218 Ga0209050_1000928
219 Ga0207697_10000265
220 Ga0207697_10000479
221 Ga0207697_10002161
222 Ga0207697_10002287
223 Ga0207688_10007399
224 Ga0207680_10009671
225 Ga0207645_10001870
226 Ga0207645_10004679
227 Ga0207684_10000190
228 Ga0207684_10002366
229 Ga0207684_10014076
230 Ga0207695_10000552
231 Ga0207693_10003611
232 Ga0207693_10015715
233 Ga0207663_10005273
234 Ga0207662_10003513
235 Ga0207646_10000248
236 Ga0207646_10001113
237 Ga0207646_10011797
238 Ga0207646_10033325
239 Ga0207681_10014694
240 Ga0207681_10033376
241 Ga0207659_10007029
242 Ga0207700_10009571
243 Ga0207706_10000611
244 Ga0207691_10000956
245 Ga0207661_10013622
246 Ga0207702_10000141
247 Ga0207648_10003405
248 Ga0207674_10002184
249 Ga0207683_10004760
250 Ga0268266_10003380
251 Ga0268266_10003997
252 Ga0265327_10002501
253 Ga0307408_100000021
254 Ga0307408_100001887
255 Ga0307508_10000551
256 Ga0307406_10000089
257 Ga0307412_10000013
258 Ga0307409_100000812
259 Ga0307414_10000036
260 Ga0373935_0023374
261 Ga0373947_0023558
262 Ga0373925_0003040
263 Ga0436365_1416355
264 Ga0436360_1020628
265 Ga0436360_1145226
266 Ga0436361_1207236
267 Ga0436363_1238758
268 Ga0450892_000007
269 Ga0450893_0000266
270 Ga0451577_0000012
271 Ga0453683_0002792
272 Ga0453684_0006551
273 Ga0453684_0018492
274 Ga0451576_0005374
275 Ga0451576_0017942
276 Ga0495592_0006437
277 Ga0495641_0020425
278 Ga0495630_0005913
279 Ga0495640_0038909
280 Ga0495587_0005040
281 Ga0495634_0014835
282 Ga0495658_0007363
283 Ga0495613_0007920
284 Ga0495674_0008948
285 Ga0495602_0037873
286 Ga0496108_0023057
287 Ga0496109_0001244
288 Ga0496109_0032598
289 Ga0496112_0005836
290 Ga0496113_0046097
291 Ga0496115_0006815
292 Ga0501032_0000093
293 Ga0501046_0030010
294 Ga0501227_000743
295 Ga0501083_0002547
296 Ga0501083_0009528
297 Ga0501035_0003295
298 Ga0501044_0000050
299 nmdc:mga06r32_44025_c1
300 Ga0495601_0012001

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01068

DNA_ligase_A_M

ATP dependent DNA ligase domain

861

921

0.96

PF04675

DNA_ligase_A_N

DNA ligase N terminus

343

559

0.92

PF01068

DNA_ligase_A_M

ATP dependent DNA ligase domain

705

836

0.91

PF04679

DNA_ligase_A_C

ATP dependent DNA ligase C terminal region

941

1033

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
3af6-assembly1.cif.gz_A the crystal structure of an archaeal cpsf subunit, ph1404 from pyrococcus horikoshii complexed with rna-analog 0.8164 26 312
3af5-assembly1.cif.gz_A the crystal structure of an archaeal cpsf subunit, ph1404 from pyrococcus horikoshii 0.8048 26 312
2i7v-assembly1.cif.gz_A structure of human cpsf-73 0.7976 17 313
2xr1-assembly2.cif.gz_A dimeric archaeal cleavage and polyadenylation specificity factor with n-terminal kh domains (kh-cpsf) from methanosarcina mazei 0.7959 26 311
7d9y-assembly1.cif.gz_A dna binding domain of human dna ligase iv mutant - a3v 0.7941 344 513
ID Description Score Start End Superfamily
af_P9WNV5_381_507_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.963 770 893 2.40.50.140
3rr5A03 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9523 772 896 2.40.50.140
af_Q57635_441_573_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9512 770 896 2.40.50.140
3gdeA01 Mainly Alpha;Orthogonal Bundle;DNA ligase i, domain 1;DNA ligase, ATP-dependent, N-terminal domain 0.947 344 552 1.10.3260.10
af_P9WNV5_381_507_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9336 770 893 2.40.50.140
ID Description Score Start End GO Terms
AF-A0A2V6M984-F1-model_v4 DNA ligase 0.9968 1 133 GO:0003684
GO:0006303
GO:0016874
GO:0035312
GO:0036297
AF-A0A2V6M984-F1-model_v4 DNA ligase 0.9893 1 133 GO:0003684
GO:0006303
GO:0016874
GO:0035312
GO:0036297
AF-A0A2V5P509-F1-model_v4 DNA ligase 0.9831 1 264 GO:0003684
GO:0006303
GO:0016874
GO:0035312
GO:0036297
AF-A0A2V5P509-F1-model_v4 DNA ligase 0.9794 1 264 GO:0003684
GO:0006303
GO:0016874
GO:0035312
GO:0036297
AF-A0A7C2BEX7-F1-model_v4 DNA ligase ATP-dependent C-terminal domain-containing protein 0.9788 791 893 GO:0003910
GO:0006266
GO:0006273
GO:0006281
GO:0006310

Map