F208293

General Info

Members Datasets Scaffolds Average Seq Length
150 101 300 259

Family's Representative Sequence

Representative Sequence 3300005563|Ga0068855_100030367|Ga0068855_1000303672
Length 302
Sequence LRCGTDEDGRTLATAAFPDMPDFAFVIALPGSGWPDDLAMPATPVATTVDDVTALALASSDIDELTARVSVCRACPRLVAWREDVARVKRRSFADEAYWGRPVPGWGDPQARIAVVGLAPAAHGGNRTGRIFTGDRSGDWLFAALHRVGLAKLPTSTHADDGQRLIGVRMVAAVRCAPPANKPTTVERDTCRPWLARELELLAPTLKVVVVLGGFGWQALLPVLVAAGYAVPKPAPRFGHGVTVQLESGRRPPDEGGRLQLLGCYHPSQQNTFTGRLTESMLDAVLRSAVDLAQGSGDRVEP

Samples

Sample ID Description Type Environment
1 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
7 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
8 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
9 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
10 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
11 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
12 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
13 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
14 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
15 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
16 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
17 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
18 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
19 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
20 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
21 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
22 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
23 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
24 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
33 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
34 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
35 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
36 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
37 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
38 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
39 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
40 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
41 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
42 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
43 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
44 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
45 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
46 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
47 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
48 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
49 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
50 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
51 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
52 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
53 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
54 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
55 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
56 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
57 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
58 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
59 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
60 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
61 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
62 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
63 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
64 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
65 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
66 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
67 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
69 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
71 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
74 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
75 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
76 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
78 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
79 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
80 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
81 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
82 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
83 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
84 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
85 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
86 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
87 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
89 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
90 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
91 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
92 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
93 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
94 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
95 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
96 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
97 2731639228 Motilibacter peucedani DSM 45328 Isolate Rhizosphere
98 2773857933 Frankia sp. BMG5.30 Isolate Nodule
99 2856741275 Microbispora triticiradicis NEAU-HRDPA2-9 Isolate Unclassified
100 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
101 2891562705 Microbispora tritici MT50 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 94.67
Metatranscriptomes 1.33
Isolates 4

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.67
Nodule 0.67
Rhizoplane 4
Rhizosphere 88
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068855_100030367 3300005563 Bacteria 6464
2 Ga0070658_10010740 3300005327 Bacteria 7338
3 Ga0070658_10036155 3300005327 Bacteria 3980
4 Ga0070658_10094398 3300005327 Bacteria 2468
5 Ga0070683_100006805 3300005329 Bacteria 9604
6 Ga0070683_100037602 3300005329 Bacteria 4431
7 Ga0070680_100500124 3300005336 Bacteria 1040
8 Ga0068868_100061766 3300005338 Bacteria 2969
9 Ga0070659_100212197 3300005366 Bacteria 1596
10 Ga0070663_100268216 3300005455 Bacteria 1356
11 Ga0070679_100148246 3300005530 Bacteria 2324
12 Ga0070684_100210021 3300005535 Bacteria 1774
13 Ga0070665_100232299 3300005548 Bacteria 1844
14 Ga0068857_100244040 3300005577 Bacteria 1645
15 Ga0075365_10042338 3300006038 Bacteria 2977
16 Ga0075365_10257450 3300006038 Bacteria 1227
17 Ga0075363_100041673 3300006048 Bacteria 2422
18 Ga0075434_100438787 3300006871 Bacteria 1327
19 Ga0105240_10014482 3300009093 Bacteria 10766
20 Ga0105245_10058475 3300009098 Bacteria 3470
21 Ga0114129_10075593 3300009147 Bacteria 4690
22 Ga0105239_10260136 3300010375 Bacteria 1950
23 Ga0157370_10073580 3300013104 Bacteria 3224
24 Ga0157369_10021983 3300013105 Bacteria 7128
25 Ga0157369_10073986 3300013105 Bacteria 3654
26 Ga0157369_10202639 3300013105 Bacteria 2082
27 Ga0157369_10262447 3300013105 Bacteria 1801
28 Ga0157372_10038772 3300013307 Bacteria 5258
29 Ga0197907_11446944 3300020069 Bacteria 968
30 Ga0206356_10085852 3300020070 Bacteria 3189
31 Ga0207705_10069440 3300025909 Bacteria 2552
32 Ga0207705_10398553 3300025909 Bacteria 1064
33 Ga0207654_10333622 3300025911 Bacteria 1040
34 Ga0207652_10149037 3300025921 Bacteria 2094
35 Ga0207661_10144574 3300025944 Bacteria 2050
36 Ga0207667_10284218 3300025949 Bacteria 1690
37 Ga0207702_10627242 3300026078 Bacteria 1056
38 Ga0207674_10301697 3300026116 Bacteria 1551
39 Ga0268266_10284393 3300028379 Bacteria 1539
40 Ga0307518_10073395 3300031838 Bacteria 2476
41 Ga0307410_10382211 3300031852 Bacteria 1133
42 Ga0307407_10357061 3300031903 Bacteria 1037
43 Ga0307412_10026237 3300031911 Bacteria 3619
44 Ga0307412_10281020 3300031911 Bacteria 1307
45 Ga0307409_100093649 3300031995 Bacteria 2469
46 Ga0307409_100137195 3300031995 Bacteria 2101
47 Ga0307416_100383048 3300032002 Bacteria 1437
48 Ga0307415_100101676 3300032126 Bacteria 2110
49 Ga0307415_100768336 3300032126 Bacteria 876
50 Ga0373954_0245999 3300035118 Bacteria 880
51 Ga0373937_0179166 3300036401 Bacteria 1990
52 Ga0395900_0018383 3300037418 Bacteria 7129
53 Ga0395900_0205484 3300037418 Bacteria 1991
54 Ga0395898_0255726 3300037466 Bacteria 1670
55 Ga0400485_04416 3300038735 Bacteria 6522
56 Ga0400486_29215 3300038742 Bacteria 140932
57 Ga0439434_0002011 3300042435 Bacteria 5879
58 Ga0466972_0012309 3300044658 Bacteria 4300
59 Ga0466972_0015981 3300044658 Bacteria 3752
60 Ga0466966_0054401 3300044684 Bacteria 2537
61 Ga0466966_0095512 3300044684 Bacteria 1842
62 Ga0466966_0125959 3300044684 Bacteria 1571
63 Ga0466961_0035184 3300044693 Bacteria 3216
64 Ga0466961_0055174 3300044693 Bacteria 2534
65 Ga0466963_0006767 3300044694 Bacteria 6812
66 Ga0466963_0021635 3300044694 Bacteria 4060
67 Ga0466963_0027476 3300044694 Bacteria 3644
68 Ga0466963_0048150 3300044694 Bacteria 2815
69 Ga0466963_0080956 3300044694 Bacteria 2199
70 Ga0466963_0104150 3300044694 Bacteria 1944
71 Ga0466964_0005485 3300044706 Bacteria 4708
72 Ga0466971_0002274 3300044719 Bacteria 8143
73 Ga0466970_0052777 3300044765 Bacteria 2170
74 Ga0466970_0135791 3300044765 Bacteria 1353
75 Ga0466957_0014071 3300044842 Bacteria 4654
76 Ga0466957_0403824 3300044842 Bacteria 935
77 Ga0466958_0002316 3300045836 Bacteria 9501
78 Ga0466958_0016986 3300045836 Bacteria 4198
79 Ga0466958_0120130 3300045836 Bacteria 1645
80 Ga0466967_0032494 3300045976 Bacteria 4407
81 Ga0466967_0059614 3300045976 Bacteria 3379
82 Ga0466967_0098623 3300045976 Bacteria 2668
83 Ga0466967_0109086 3300045976 Bacteria 2541
84 Ga0466967_0181756 3300045976 Bacteria 1984
85 Ga0495676_0048886 3300047321 Bacteria 3406
86 Ga0496102_0143008 3300048905 Bacteria 2244
87 Ga0496105_0233584 3300048908 Bacteria 1494
88 Ga0496106_0024939 3300048909 Bacteria 4447
89 Ga0496108_0058915 3300048911 Bacteria 3229
90 Ga0496113_0152770 3300048916 Bacteria 1822
91 Ga0496114_0003252 3300048917 Bacteria 12478
92 Ga0496119_0001880 3300048922 Bacteria 24224
93 Ga0496120_0010016 3300048923 Bacteria 6657
94 Ga0501031_0156792 3300049568 Bacteria 1488
95 Ga0501032_0012007 3300049569 Bacteria 6201
96 Ga0501034_0028090 3300049571 Bacteria 5722
97 Ga0501036_0655228 3300049572 Bacteria 869
98 Ga0501037_0127767 3300049573 Bacteria 1824
99 Ga0501038_0026951 3300049574 Bacteria 5115
100 Ga0501038_0048652 3300049574 Bacteria 3668
101 Ga0501038_0206926 3300049574 Bacteria 1572
102 Ga0501039_0042888 3300049575 Bacteria 3495
103 Ga0501040_0058103 3300049576 Bacteria 2656
104 Ga0501040_0117124 3300049576 Bacteria 1867
105 Ga0501041_0137575 3300049577 Bacteria 1522
106 Ga0501042_0301306 3300049578 Bacteria 1158
107 Ga0501043_0008250 3300049579 Bacteria 8205
108 Ga0501043_0203016 3300049579 Bacteria 1538
109 Ga0501046_0141876 3300049580 Bacteria 1817
110 Ga0501048_0000895 3300049582 Bacteria 21993
111 Ga0501048_0053458 3300049582 Bacteria 2872
112 Ga0501048_0362082 3300049582 Bacteria 1035
113 Ga0501067_0006074 3300049583 Bacteria 6695
114 Ga0501069_0006712 3300049585 Bacteria 6027
115 Ga0501070_0008660 3300049586 Bacteria 8601
116 Ga0501070_0041963 3300049586 Bacteria 3809
117 Ga0501070_0179333 3300049586 Bacteria 1744
118 Ga0501071_0037019 3300049587 Bacteria 3482
119 Ga0501072_0088356 3300049588 Bacteria 2459
120 Ga0501072_0235113 3300049588 Bacteria 1459
121 Ga0501076_0019750 3300049592 Bacteria 5153
122 Ga0501076_0247669 3300049592 Bacteria 1458
123 Ga0501079_0217515 3300049741 Bacteria 1492
124 Ga0501080_0003628 3300049742 Bacteria 13607
125 Ga0501080_0093211 3300049742 Bacteria 2797
126 Ga0501080_0116061 3300049742 Bacteria 2482
127 Ga0501080_0298740 3300049742 Bacteria 1461
128 Ga0501081_0045886 3300049743 Bacteria 3001
129 Ga0501081_0078894 3300049743 Bacteria 2302
130 Ga0501081_0118971 3300049743 Bacteria 1880
131 Ga0501035_0025633 3300049822 Bacteria 5404
132 Ga0501035_0228034 3300049822 Bacteria 1588
133 Ga0501044_0071115 3300049823 Bacteria 3538
134 nmdc:mga0yw44_18540_c1 3300050492 Bacteria 3816
135 nmdc:mga0n895_371571_c1 3300050512 Bacteria 1447
136 Ga0495619_0092657 3300053085 Bacteria 2047
137 Ga0501084_0247720 3300054114 Bacteria 1504
138 Ga0501084_0560788 3300054114 Bacteria 965
139 Ga0501082_0195770 3300060353 Bacteria 1758
140 Ga0466962_0011472 3300061719 Bacteria 4266
141 Ga0466962_0066693 3300061719 Bacteria 1718
142 Ga0530510_0021014 3300061734 Bacteria 4643
143 Ga0530510_0041381 3300061734 Bacteria 3327
144 Ga0530510_0050144 3300061734 Bacteria 3015
145 2676492986 2675903060 Bacteria 10051191
146 2731909251 2731639228 Bacteria 4187555
147 2774901364 2773857933 Bacteria 5818019
148 2856741675 2856741275 Bacteria 8096094
149 2862297289 2862290372 Bacteria 7471434
150 2891566240 2891562705 Bacteria 8039471
151 Ga0068855_100030367
152 Ga0070658_10010740
153 Ga0070658_10036155
154 Ga0070658_10094398
155 Ga0070683_100006805
156 Ga0070683_100037602
157 Ga0070680_100500124
158 Ga0068868_100061766
159 Ga0070659_100212197
160 Ga0070663_100268216
161 Ga0070679_100148246
162 Ga0070684_100210021
163 Ga0070665_100232299
164 Ga0068857_100244040
165 Ga0075365_10042338
166 Ga0075365_10257450
167 Ga0075363_100041673
168 Ga0075434_100438787
169 Ga0105240_10014482
170 Ga0105245_10058475
171 Ga0114129_10075593
172 Ga0105239_10260136
173 Ga0157370_10073580
174 Ga0157369_10021983
175 Ga0157369_10073986
176 Ga0157369_10202639
177 Ga0157369_10262447
178 Ga0157372_10038772
179 Ga0197907_11446944
180 Ga0206356_10085852
181 Ga0207705_10069440
182 Ga0207705_10398553
183 Ga0207654_10333622
184 Ga0207652_10149037
185 Ga0207661_10144574
186 Ga0207667_10284218
187 Ga0207702_10627242
188 Ga0207674_10301697
189 Ga0268266_10284393
190 Ga0307518_10073395
191 Ga0307410_10382211
192 Ga0307407_10357061
193 Ga0307412_10026237
194 Ga0307412_10281020
195 Ga0307409_100093649
196 Ga0307409_100137195
197 Ga0307416_100383048
198 Ga0307415_100101676
199 Ga0307415_100768336
200 Ga0373954_0245999
201 Ga0373937_0179166
202 Ga0395900_0018383
203 Ga0395900_0205484
204 Ga0395898_0255726
205 Ga0400485_04416
206 Ga0400486_29215
207 Ga0439434_0002011
208 Ga0466972_0012309
209 Ga0466972_0015981
210 Ga0466966_0054401
211 Ga0466966_0095512
212 Ga0466966_0125959
213 Ga0466961_0035184
214 Ga0466961_0055174
215 Ga0466963_0006767
216 Ga0466963_0021635
217 Ga0466963_0027476
218 Ga0466963_0048150
219 Ga0466963_0080956
220 Ga0466963_0104150
221 Ga0466964_0005485
222 Ga0466971_0002274
223 Ga0466970_0052777
224 Ga0466970_0135791
225 Ga0466957_0014071
226 Ga0466957_0403824
227 Ga0466958_0002316
228 Ga0466958_0016986
229 Ga0466958_0120130
230 Ga0466967_0032494
231 Ga0466967_0059614
232 Ga0466967_0098623
233 Ga0466967_0109086
234 Ga0466967_0181756
235 Ga0495676_0048886
236 Ga0496102_0143008
237 Ga0496105_0233584
238 Ga0496106_0024939
239 Ga0496108_0058915
240 Ga0496113_0152770
241 Ga0496114_0003252
242 Ga0496119_0001880
243 Ga0496120_0010016
244 Ga0501031_0156792
245 Ga0501032_0012007
246 Ga0501034_0028090
247 Ga0501036_0655228
248 Ga0501037_0127767
249 Ga0501038_0026951
250 Ga0501038_0048652
251 Ga0501038_0206926
252 Ga0501039_0042888
253 Ga0501040_0058103
254 Ga0501040_0117124
255 Ga0501041_0137575
256 Ga0501042_0301306
257 Ga0501043_0008250
258 Ga0501043_0203016
259 Ga0501046_0141876
260 Ga0501048_0000895
261 Ga0501048_0053458
262 Ga0501048_0362082
263 Ga0501067_0006074
264 Ga0501069_0006712
265 Ga0501070_0008660
266 Ga0501070_0041963
267 Ga0501070_0179333
268 Ga0501071_0037019
269 Ga0501072_0088356
270 Ga0501072_0235113
271 Ga0501076_0019750
272 Ga0501076_0247669
273 Ga0501079_0217515
274 Ga0501080_0003628
275 Ga0501080_0093211
276 Ga0501080_0116061
277 Ga0501080_0298740
278 Ga0501081_0045886
279 Ga0501081_0078894
280 Ga0501081_0118971
281 Ga0501035_0025633
282 Ga0501035_0228034
283 Ga0501044_0071115
284 nmdc:mga0yw44_18540_c1
285 nmdc:mga0n895_371571_c1
286 Ga0495619_0092657
287 Ga0501084_0247720
288 Ga0501084_0560788
289 Ga0501082_0195770
290 Ga0466962_0011472
291 Ga0466962_0066693
292 Ga0530510_0021014
293 Ga0530510_0041381
294 Ga0530510_0050144
295 2676492986
296 2731909251
297 2774901364
298 2856741675
299 2862297289
300 2891566240

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03167

UDG

Uracil DNA glycosylase superfamily

104

289

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
2dp6-assembly1.cif.gz_A crystal structure of uracil-dna glycosylase in complex with ap:c containing dna 0.9025 32 263
2dp6-assembly1.cif.gz_A crystal structure of uracil-dna glycosylase in complex with ap:c containing dna 0.8909 32 263
1ui1-assembly1.cif.gz_A crystal structure of uracil-dna glycosylase from thermus thermophilus hb8 0.7578 33 260
1ui1-assembly1.cif.gz_A crystal structure of uracil-dna glycosylase from thermus thermophilus hb8 0.7395 33 260
8iiq-assembly1.cif.gz_A msmudgx h109s/e52n double mutant 0.7222 23 261
ID Description Score Start End Superfamily
af_P9WM53_47_267_3.40.470.10 Alpha Beta;3-Layer(aba) Sandwich;Uracil-DNA Glycosylase, subunit E;Uracil-DNA glycosylase-like domain 0.9173 35 263 3.40.470.10
2d3yA00 Alpha Beta;3-Layer(aba) Sandwich;Uracil-DNA Glycosylase, subunit E;Uracil-DNA glycosylase-like domain 0.912 32 263 3.40.470.10
af_P9WM53_47_267_3.40.470.10 Alpha Beta;3-Layer(aba) Sandwich;Uracil-DNA Glycosylase, subunit E;Uracil-DNA glycosylase-like domain 0.9014 35 263 3.40.470.10
2d3yA00 Alpha Beta;3-Layer(aba) Sandwich;Uracil-DNA Glycosylase, subunit E;Uracil-DNA glycosylase-like domain 0.9001 32 263 3.40.470.10
1ui0A00 Alpha Beta;3-Layer(aba) Sandwich;Uracil-DNA Glycosylase, subunit E;Uracil-DNA glycosylase-like domain 0.7621 33 260 3.40.470.10
ID Description Score Start End GO Terms
AF-W7T1Z4-F1-model_v4 Uracil-DNA glycosylase, family 4 0.9829 141 262 GO:0006281
GO:0046872
GO:0051539
GO:0097506
AF-A0A1X4I8D6-F1-model_v4 Uracil-DNA glycosylase 0.9805 176 263
AF-A0A1S8CBF3-F1-model_v4 Uracil-DNA glycosylase 0.9731 154 262 GO:0016020
AF-A0A838V6Y0-F1-model_v4 Uracil-DNA glycosylase 0.9728 115 262 GO:0006281
GO:0046872
GO:0051539
GO:0097506
AF-A0A7V8Y024-F1-model_v4 Uracil-DNA glycosylase 0.9698 181 263

Map