F207139

General Info

Members Datasets Scaffolds Average Seq Length
149 121 116 771

Family's Representative Sequence

Representative Sequence 3300049569|Ga0501032_0000014|Ga0501032_0000014_65428_67860
Length 810
Sequence MMTIRKIAVIGSGVMGSGIAAQIANAGLPVVLLDIVPKDAKDRSMLAKGAIEKMLKADPAPFMRKSNAKLITPGNLEDDLDLLKDVDWIIEVVLEDLNIKHATYEKLNKVRKKGSIISSNTSTIPLHKLVEGIGKDFEADFMITHFFNPPRYMRLLELVVGKNTRPDAVQIIREICDVKLGKGVVICNDTPGFIANRLGVFWLTAGVNEAINLGISVEAADAIMSKPVGIPKTGVFGLIDLVGIDLMPKLSSSLLSTLAKDDPYRKIFVDHAFVHDMIKAGYTGRKGKGGFYRLDPNASGAKKEKQSLTLNGLKAGGPNFSPDVHFKKSDKVKLASEDAGKAGLKAVLEHEDEGGKYAWKVLSQTLAYAAFLVPEVADTIVEIDDGMKLGYNWKFGPFEMMDALGPAWFAEKLKAEGIEVPELLKKVGQGTFYKIENGKRQFFGTDGQYHDVVRPEGVLLLSDIKLAAKPVLKNASAKVWDIGDGVLCFEKTSKMNTFDEQVFDLLEETIKLVGDGKKQYKALVVYNEASNFSAGANLGLAAFMINIAMWPQVEEFIARGQRVFMGLKFAPFPVVSAPSGMALGGGCEILLSSDAVQAHAETYCGLVEVGVGIIPGWGGCKELILRFREREKAQFRKDLGKISKKNLWFSPDVTPMGATRKAFETIATATVAKSAFEAVDIGYLRESDQITMNRDRLLFDAKQKALALSKDYIPPVKAEDIRLPGVGGKMALDLAVSDLRKSGKATPYDVVVSGAVASVVTGGKKGDWTVKMREEDILALELKEFMKLLRNEGTMARIEHMLENGKPLRN

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2511231221 Azospirillum lipoferum 4B Isolate Rhizosphere
3 2513237087 Azorhizobium doebereinerae UFLA1-100 Isolate Nodule
4 2522572158 Azospirillum halopraeferens DSM 3675 Isolate Unclassified
5 2582581305 Rhizorhabdus wittichii YR128 Isolate Rhizosphere
6 2595698237 Methylobacterium sp. UNCCL125 Isolate Unclassified
7 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
8 2599185354 Sphingomonas sp. NFR15 Isolate Rhizoplane
9 2738541275 Novosphingobium sp. GV027 Isolate Unclassified
10 2738541301 Novosphingobium sp. GV079 Isolate Unclassified
11 2738541304 Novosphingobium sp. GV061 Isolate Unclassified
12 2738543022 Novosphingobium sp. GV055 Isolate Unclassified
13 2738543033 Novosphingobium sp. GV064 Isolate Unclassified
14 2751185897 Sphingomonas panacis DCY99 Isolate Unclassified
15 2773857925 Microvirga vignae BR3299 Isolate Unclassified
16 2821443989 Inquilinus ginsengisoli 584 Isolate Unclassified
17 2842333319 Skermanella aerolata SEMIA 4010 Isolate Nodule
18 2844533157 Inquilinus sp. R-72501 v. 2 Isolate Unclassified
19 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
20 2848858292 Azospirillum brasilense Az39 Isolate Unclassified
21 2882456835 Microvirga sp. KLBC 81 Isolate Unclassified
22 2883291878 Hypericibacter terrae R5913 Isolate Rhizosphere
23 2883354860 Hypericibacter adhaerens R5959 Isolate Rhizosphere
24 2896253425 Aurantiacibacter rhizosphaerae GH3-10 Isolate Rhizosphere
25 2897803580 Azospirillum doebereinerae GSF71 Isolate Unclassified
26 2902330777 Methylobacterium sp. 2A Isolate Unclassified
27 2919138771 Novosphingobium sp. 1748 Isolate Rhizosphere
28 2928100450 Novosphingobium sp. 1529 Isolate Rhizosphere
29 2928125067 Methylobacterium sp. 1973 Isolate Unclassified
30 2928959182 Novosphingobium capsulatum 1057 Isolate Unclassified
31 2946787523 Sphingomonas faeni W4I17 Isolate Rhizosphere
32 2995392953 Martelella limonii NBRC 109441 Isolate Unclassified
33 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
34 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
35 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
36 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
37 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
38 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
39 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
40 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
41 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
42 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
43 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
44 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
45 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
46 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
47 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
48 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
49 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
50 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
51 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
52 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
53 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
54 3300015690 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_D05 Metagenome Rhizosphere
55 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
56 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
58 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
59 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
60 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
74 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
75 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
76 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
77 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
78 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
79 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
80 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
81 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
82 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
83 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
84 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
85 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
86 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
87 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
88 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
89 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
90 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
91 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
92 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
93 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
94 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
95 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
96 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
97 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
98 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
102 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
108 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
109 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
111 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
112 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
113 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
114 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
115 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
116 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
117 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
118 3300053724 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 endosphere Metagenome Endosphere
119 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
120 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
121 8054002106 Azospirillum lipoferum 59b Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 77.85
Metatranscriptomes 0
Isolates 22.15

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.75
Nodule 1.34
Rhizoplane 4.03
Rhizosphere 61.07
Stem 0
Stem Tuber 0
Unclassified 20.81

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1806567 2162886007 Bacteria 5695
2 JGI25151J46595_10000246 3300003187 Bacteria 63372
3 rootH2_10016009 3300003320 Bacteria 30912
4 JGI25160J50197_1010652 3300003354 Bacteria 3310
5 Ga0065704_10001101 3300005289 Bacteria 18140
6 Ga0070658_10003210 3300005327 Bacteria 13496
7 Ga0070668_100028920 3300005347 Bacteria 4207
8 Ga0070669_100000688 3300005353 Bacteria 24774
9 Ga0070669_100004308 3300005353 Bacteria 10287
10 Ga0070667_100000137 3300005367 Bacteria 93476
11 Ga0070667_100000377 3300005367 Bacteria 48838
12 Ga0070667_100000891 3300005367 Bacteria 27611
13 Ga0070695_100003662 3300005545 Bacteria 8950
14 Ga0070665_100000385 3300005548 Bacteria 65243
15 Ga0068855_100018882 3300005563 Bacteria 8288
16 Ga0068854_100000923 3300005578 Bacteria 17655
17 Ga0068856_100062152 3300005614 Bacteria 3689
18 Ga0068852_100000166 3300005616 Bacteria 44169
19 Ga0068863_100001066 3300005841 Bacteria 27396
20 Ga0068860_100000493 3300005843 Bacteria 48857
21 Ga0068860_100026306 3300005843 Bacteria 5610
22 Ga0068860_100044019 3300005843 Bacteria 4256
23 Ga0081538_10019026 3300005981 Bacteria 5127
24 Ga0081538_10027462 3300005981 Bacteria 3945
25 Ga0105251_10003148 3300009011 Bacteria 12243
26 Ga0105240_10004217 3300009093 Bacteria 21977
27 Ga0105242_10011943 3300009176 Bacteria 6685
28 Ga0105248_10051571 3300009177 Bacteria 4616
29 Ga0183363_1001 3300015690 Bacteria 611534
30 Ga0209130_1000591 3300025284 Bacteria 35327
31 Ga0209676_1000197 3300025292 Bacteria 135043
32 Ga0209025_1000265 3300025294 Bacteria 123182
33 Ga0209758_1002800 3300025297 Bacteria 17020
34 Ga0207426_1000088 3300025302 Bacteria 287526
35 Ga0207696_1003371 3300025711 Bacteria 7324
36 Ga0207713_1001470 3300025735 Bacteria 18672
37 Ga0207713_1004824 3300025735 Bacteria 8656
38 Ga0207680_10016342 3300025903 Bacteria 3894
39 Ga0207647_10009044 3300025904 Bacteria 7091
40 Ga0207705_10000023 3300025909 Bacteria 301755
41 Ga0207681_10001142 3300025923 Bacteria 17127
42 Ga0207681_10001880 3300025923 Bacteria 13436
43 Ga0207668_10018142 3300025972 Bacteria 4421
44 Ga0207640_10007785 3300025981 Bacteria 5918
45 Ga0207658_10000122 3300025986 Bacteria 84415
46 Ga0207658_10000813 3300025986 Bacteria 26103
47 Ga0207658_10002446 3300025986 Bacteria 13591
48 Ga0207658_10005589 3300025986 Bacteria 8597
49 Ga0207641_10000303 3300026088 Bacteria 61340
50 Ga0207698_10000105 3300026142 Bacteria 53341
51 Ga0268266_10000338 3300028379 Bacteria 73458
52 Ga0268266_10018252 3300028379 Bacteria 5982
53 Ga0268264_10000533 3300028381 Bacteria 48241
54 Ga0268264_10010651 3300028381 Bacteria 7598
55 Ga0268264_10011691 3300028381 Bacteria 7239
56 Ga0265331_10002072 3300031250 Bacteria 13869
57 Ga0307412_10008434 3300031911 Bacteria 5883
58 Ga0316584_0014125 3300036712 Bacteria 5674
59 Ga0436361_0391493 3300039447 Bacteria 3926
60 Ga0453684_0009942 3300044712 Bacteria 16415
61 Ga0495627_000836 3300046453 Bacteria 22193
62 Ga0495650_0000507 3300046471 Bacteria 58153
63 Ga0495607_0040879 3300046501 Bacteria 2757
64 Ga0495610_0000044 3300046512 Bacteria 156847
65 Ga0495620_0015277 3300046515 Bacteria 3880
66 Ga0495632_0000848 3300046519 Bacteria 26976
67 Ga0495637_0017178 3300046520 Bacteria 3376
68 Ga0495681_0000014 3300047470 Bacteria 184395
69 Ga0495686_0010203 3300047472 Bacteria 6692
70 Ga0496102_0002338 3300048905 Bacteria 16169
71 Ga0496103_0000038 3300048906 Bacteria 178822
72 Ga0496104_0005045 3300048907 Bacteria 11517
73 Ga0496105_0005537 3300048908 Bacteria 9585
74 Ga0496113_0000117 3300048916 Bacteria 34169
75 Ga0496117_0000629 3300048920 Bacteria 57168
76 Ga0496119_0000313 3300048922 Bacteria 67933
77 Ga0496119_0033016 3300048922 Bacteria 3441
78 Ga0496121_0000031 3300048924 Bacteria 384119
79 Ga0496121_0021189 3300048924 Bacteria 6381
80 Ga0496122_0029332 3300048925 Bacteria 4643
81 Ga0496124_0006922 3300048927 Bacteria 12186
82 Ga0496126_0000066 3300048929 Bacteria 252188
83 Ga0501032_0000014 3300049569 Bacteria 182017
84 Ga0501033_0001389 3300049570 Bacteria 21505
85 Ga0501033_0002359 3300049570 Bacteria 16108
86 Ga0501034_0000001 3300049571 Bacteria 2184493
87 Ga0501034_0024505 3300049571 Bacteria 6139
88 Ga0501034_0096361 3300049571 Bacteria 2955
89 Ga0501036_0020905 3300049572 Bacteria 5496
90 Ga0501036_0091045 3300049572 Bacteria 2576
91 Ga0501038_0000042 3300049574 Bacteria 115753
92 Ga0501039_0000016 3300049575 Bacteria 211521
93 Ga0501039_0018865 3300049575 Bacteria 5296
94 Ga0501042_0039268 3300049578 Bacteria 3363
95 Ga0501043_0046080 3300049579 Bacteria 3428
96 Ga0501047_0000896 3300049581 Bacteria 30435
97 Ga0501047_0011348 3300049581 Bacteria 8435
98 Ga0501070_0022184 3300049586 Bacteria 5318
99 Ga0501083_0006279 3300049744 Bacteria 8433
100 Ga0501083_0015430 3300049744 Bacteria 5350
101 Ga0501035_0005790 3300049822 Bacteria 11649
102 Ga0501035_0051309 3300049822 Bacteria 3694
103 Ga0501044_0009655 3300049823 Bacteria 10497
104 Ga0501044_0149934 3300049823 Bacteria 2315
105 Ga0500618_000514 3300053125 Bacteria 24477
106 Ga0500618_009388 3300053125 Bacteria 2672
107 Ga0500655_001276 3300053133 Bacteria 4773
108 Ga0500559_0007154 3300053136 Bacteria 4971
109 Ga0500590_006610 3300053148 Bacteria 5660
110 Ga0500622_0033402 3300053156 Bacteria 2698
111 Ga0500624_000825 3300053157 Bacteria 7096
112 Ga0500636_0004009 3300053177 Bacteria 8302
113 Ga0500636_0036141 3300053177 Bacteria 2923
114 Ga0500570_000052 3300053724 Bacteria 28845
115 Ga0500645_010410 3300053730 Bacteria 3078
116 Ga0500661_000346 3300055283 Bacteria 8439

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2946787523 2946788632 704
2 3300009176 Ga0105242_10011943 Ga0105242_100119435 713
3 3300049744 Ga0501083_0015430 Ga0501083_0015430_321_2696 745
4 3300036712 Ga0316584_0014125 Ga0316584_0014125_1306_3636 748
5 3300049570 Ga0501033_0002359 Ga0501033_0002359_5881_8172 751
6 3300049571 Ga0501034_0024505 Ga0501034_0024505_2765_5056 751
7 3300049822 Ga0501035_0051309 Ga0501035_0051309_817_3108 751
8 3300005563 Ga0068855_100018882 Ga0068855_1000188826 753
9 3300049823 Ga0501044_0149934 Ga0501044_0149934_39_2303 753
10 3300005548 Ga0070665_100000385 Ga0070665_10000038538 755
11 3300028379 Ga0268266_10000338 Ga0268266_1000033831 755
12 3300053125 Ga0500618_000514 Ga0500618_000514_18694_20961 755
13 3300005367 Ga0070667_100000377 Ga0070667_1000003772 757
14 3300025986 Ga0207658_10000813 Ga0207658_1000081320 757
15 3300028381 Ga0268264_10010651 Ga0268264_100106512 757
16 3300005578 Ga0068854_100000923 Ga0068854_10000092313 758
17 3300005614 Ga0068856_100062152 Ga0068856_1000621521 758
18 3300005616 Ga0068852_100000166 Ga0068852_10000016612 758
19 3300009093 Ga0105240_10004217 Ga0105240_1000421712 758
20 3300025904 Ga0207647_10009044 Ga0207647_100090443 758
21 3300025981 Ga0207640_10007785 Ga0207640_100077852 758
22 3300026142 Ga0207698_10000105 Ga0207698_1000010510 758
23 3300044712 Ga0453684_0009942 Ga0453684_0009942_6011_8332 758
24 3300046453 Ga0495627_000836 Ga0495627_000836_14113_16437 758
25 3300046471 Ga0495650_0000507 Ga0495650_0000507_34195_36519 758
26 3300046512 Ga0495610_0000044 Ga0495610_0000044_31226_33550 758
27 3300046515 Ga0495620_0015277 Ga0495620_0015277_454_2778 758
28 3300046519 Ga0495632_0000848 Ga0495632_0000848_23515_25839 758
29 3300047470 Ga0495681_0000014 Ga0495681_0000014_95807_98131 758
30 3300049586 Ga0501070_0022184 Ga0501070_0022184_2080_4386 759
31 3300049744 Ga0501083_0006279 Ga0501083_0006279_1165_3471 759
32 3300003320 rootH2_10016009 rootH2_1001600924 760
33 3300005981 Ga0081538_10019026 Ga0081538_100190262 761
34 3300053125 Ga0500618_009388 Ga0500618_009388_75_2429 761
35 3300005843 Ga0068860_100044019 Ga0068860_1000440191 762
36 3300025986 Ga0207658_10005589 Ga0207658_100055895 762
37 3300005981 Ga0081538_10027462 Ga0081538_100274622 763
38 3300025292 Ga0209676_1000197 Ga0209676_100019734 763
39 3300048925 Ga0496122_0029332 Ga0496122_0029332_1910_4249 763
40 3300053157 Ga0500624_000825 Ga0500624_000825_2584_4908 763
41 3300053177 Ga0500636_0036141 Ga0500636_0036141_96_2420 763
42 iso_pu_bacteria 2773857925 2774871509 763
43 iso_pu_bacteria 2882456835 2882459400 763
44 3300047472 Ga0495686_0010203 Ga0495686_0010203_2761_5058 764
45 3300048924 Ga0496121_0000031 Ga0496121_0000031_139836_142133 764
46 iso_pu_bacteria 2919138771 2919139335 764
47 3300049571 Ga0501034_0096361 Ga0501034_0096361_94_2460 765
48 3300049579 Ga0501043_0046080 Ga0501043_0046080_806_3112 765
49 3300049581 Ga0501047_0000896 Ga0501047_0000896_15657_17963 765
50 iso_pu_bacteria 2513237087 2513591012 765
51 iso_pu_bacteria 2582581305 2585261141 765
52 iso_pu_bacteria 2897803580 2897806919 765
53 iso_pu_bacteria 2511231221 2512035238 766
54 iso_pu_bacteria 2522572158 2523105725 766
55 iso_pu_bacteria 2522572158 2523107643 766
56 iso_pu_bacteria 2595698237 2596376327 766
57 iso_pu_bacteria 2597490356 2599104287 766
58 iso_pu_bacteria 2821443989 2821448341 766
59 iso_pu_bacteria 2842333319 2842339127 766
60 iso_pu_bacteria 2844533157 2844535109 766
61 iso_pu_bacteria 2846952575 2846956598 766
62 iso_pu_bacteria 2848858292 2848862809 766
63 iso_pu_bacteria 2902330777 2902332128 766
64 iso_pu_bacteria 2928125067 2928129165 766
65 iso_pu_bacteria 8054002106 8054009118 766
66 3300049570 Ga0501033_0001389 Ga0501033_0001389_5887_8220 767
67 3300049572 Ga0501036_0020905 Ga0501036_0020905_2054_4387 767
68 3300049575 Ga0501039_0018865 Ga0501039_0018865_1173_3503 767
69 3300049581 Ga0501047_0011348 Ga0501047_0011348_1832_4165 767
70 3300049822 Ga0501035_0005790 Ga0501035_0005790_6609_8939 767
71 3300049823 Ga0501044_0009655 Ga0501044_0009655_1384_3717 767
72 3300053730 Ga0500645_010410 Ga0500645_010410_286_2640 767
73 3300005367 Ga0070667_100000137 Ga0070667_10000013759 768
74 3300005841 Ga0068863_100001066 Ga0068863_1000010666 768
75 3300005843 Ga0068860_100000493 Ga0068860_1000004932 768
76 3300025903 Ga0207680_10016342 Ga0207680_100163422 768
77 3300025986 Ga0207658_10000122 Ga0207658_1000012277 768
78 3300026088 Ga0207641_10000303 Ga0207641_1000030352 768
79 3300028381 Ga0268264_10000533 Ga0268264_1000053341 768
80 3300031911 Ga0307412_10008434 Ga0307412_100084345 768
81 3300039447 Ga0436361_0391493 Ga0436361_0391493_1154_3466 768
82 3300046520 Ga0495637_0017178 Ga0495637_0017178_978_3296 768
83 3300049578 Ga0501042_0039268 Ga0501042_0039268_468_2807 768
84 3300053133 Ga0500655_001276 Ga0500655_001276_2355_4673 768
85 3300053148 Ga0500590_006610 Ga0500590_006610_1275_3593 768
86 3300053156 Ga0500622_0033402 Ga0500622_0033402_104_2422 768
87 3300053724 Ga0500570_000052 Ga0500570_000052_13568_15886 768
88 iso_pu_bacteria 2599185354 2600202442 768
89 iso_pu_bacteria 2751185897 2753764234 768
90 iso_pu_bacteria 2995392953 2995393683 768
91 3300003187 JGI25151J46595_10000246 JGI25151J46595_1000024630 769
92 3300003354 JGI25160J50197_1010652 JGI25160J50197_10106522 769
93 3300005545 Ga0070695_100003662 Ga0070695_1000036626 769
94 3300025284 Ga0209130_1000591 Ga0209130_10005914 769
95 3300025294 Ga0209025_1000265 Ga0209025_100026587 769
96 3300025297 Ga0209758_1002800 Ga0209758_10028004 769
97 3300025302 Ga0207426_1000088 Ga0207426_100008817 769
98 3300031250 Ga0265331_10002072 Ga0265331_1000207210 769
99 3300049569 Ga0501032_0000014 Ga0501032_0000014_65428_67860 769
100 3300049571 Ga0501034_0000001 Ga0501034_0000001_324307_326739 769
101 3300049572 Ga0501036_0091045 Ga0501036_0091045_70_2502 769
102 3300049574 Ga0501038_0000042 Ga0501038_0000042_26336_28753 769
103 3300049575 Ga0501039_0000016 Ga0501039_0000016_57199_59631 769
104 3300053177 Ga0500636_0004009 Ga0500636_0004009_1299_3638 769
105 iso_pu_bacteria 2896253425 2896255530 769
106 3300015690 Ga0183363_1001 Ga0183363_1001187 770
107 3300046501 Ga0495607_0040879 Ga0495607_0040879_266_2596 770
108 iso_pu_bacteria 2883354860 2883359637 771
109 2162886007 SwRhRL2b_contig_1806567 SwRhRL2b_0366.00005090 772
110 3300005289 Ga0065704_10001101 Ga0065704_1000110117 772
111 3300005327 Ga0070658_10003210 Ga0070658_100032107 772
112 3300005347 Ga0070668_100028920 Ga0070668_1000289202 772
113 3300005353 Ga0070669_100000688 Ga0070669_10000068815 772
114 3300005353 Ga0070669_100004308 Ga0070669_1000043085 772
115 3300005367 Ga0070667_100000891 Ga0070667_10000089116 772
116 3300005843 Ga0068860_100026306 Ga0068860_1000263063 772
117 3300009011 Ga0105251_10003148 Ga0105251_1000314810 772
118 3300009177 Ga0105248_10051571 Ga0105248_100515713 772
119 3300025711 Ga0207696_1003371 Ga0207696_10033712 772
120 3300025735 Ga0207713_1001470 Ga0207713_10014707 772
121 3300025735 Ga0207713_1004824 Ga0207713_10048245 772
122 3300025909 Ga0207705_10000023 Ga0207705_1000002353 772
123 3300025923 Ga0207681_10001142 Ga0207681_1000114216 772
124 3300025923 Ga0207681_10001880 Ga0207681_1000188010 772
125 3300025972 Ga0207668_10018142 Ga0207668_100181422 772
126 3300025986 Ga0207658_10002446 Ga0207658_100024469 772
127 3300028379 Ga0268266_10018252 Ga0268266_100182525 772
128 3300028381 Ga0268264_10011691 Ga0268264_100116912 772
129 3300048905 Ga0496102_0002338 Ga0496102_0002338_10010_12328 772
130 3300048906 Ga0496103_0000038 Ga0496103_0000038_131582_133900 772
131 3300048907 Ga0496104_0005045 Ga0496104_0005045_5295_7613 772
132 3300048908 Ga0496105_0005537 Ga0496105_0005537_877_3195 772
133 3300048916 Ga0496113_0000117 Ga0496113_0000117_31262_33580 772
134 3300048920 Ga0496117_0000629 Ga0496117_0000629_9911_12229 772
135 3300048922 Ga0496119_0000313 Ga0496119_0000313_29507_31825 772
136 3300048922 Ga0496119_0033016 Ga0496119_0033016_617_2965 772
137 3300048924 Ga0496121_0021189 Ga0496121_0021189_302_2635 772
138 3300048927 Ga0496124_0006922 Ga0496124_0006922_8894_11212 772
139 3300048929 Ga0496126_0000066 Ga0496126_0000066_87361_89679 772
140 3300053136 Ga0500559_0007154 Ga0500559_0007154_2135_4468 772
141 3300055283 Ga0500661_000346 Ga0500661_000346_5609_7942 772
142 iso_pu_bacteria 2738541275 2738710258 772
143 iso_pu_bacteria 2738541301 2738848683 772
144 iso_pu_bacteria 2738541304 2738864412 772
145 iso_pu_bacteria 2738543022 2739296930 772
146 iso_pu_bacteria 2738543033 2739358608 772
147 iso_pu_bacteria 2883291878 2883296871 772
148 iso_pu_bacteria 2928100450 2928101903 772
149 iso_pu_bacteria 2928959182 2928959995 772

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02737

3HCDH_N

3-hydroxyacyl-CoA dehydrogenase, NAD binding domain

6

190

0.91

PF00725

3HCDH

3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

192

294

0.88

PF00378

ECH_1

Enoyl-CoA hydratase/isomerase

485

634

0.86

PF03446

NAD_binding_2

NAD binding domain of 6-phosphogluconate dehydrogenase

6

129

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
6pvi-assembly1.cif.gz_A crystal structure of phqk in complex with paraherquamide l 0.9575 7 34
7da9-assembly1.cif.gz_B structure of 6-hydroxy-3-succinoyl-pyridine 3-monooxygenase (hspb) from pseudomonas putida s16 0.9442 7 35
6pvj-assembly1.cif.gz_A crystal structure of phqk in complex with malbrancheamide c 0.9095 4 36
4bk1-assembly1.cif.gz_A-2 crystal structure of 3-hydroxybenzoate 6-hydroxylase uncovers lipid- assisted flavoprotein strategy for regioselective aromatic hydroxylation: h213s mutant in complex with 3-hydroxybenzoate 0.903 6 39
4bk3-assembly1.cif.gz_A-2 crystal structure of 3-hydroxybenzoate 6-hydroxylase uncovers lipid- assisted flavoprotein strategy for regioselective aromatic hydroxylation: y105f mutant 0.9004 6 39
ID Description Score Start End Superfamily
af_I1MHA5_112_472_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9765 7 34 3.50.50.60
3kd9B02 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9687 5 34 3.50.50.60
af_Q2G1C9_445_749_3.90.226.10 Alpha Beta;Alpha-Beta Complex;2-enoyl-CoA Hydratase; Chain A, domain 1;2-enoyl-CoA Hydratase; Chain A, domain 1 0.9565 469 768 3.90.226.10
af_Q2G1C9_445_749_3.90.226.10 Alpha Beta;Alpha-Beta Complex;2-enoyl-CoA Hydratase; Chain A, domain 1;2-enoyl-CoA Hydratase; Chain A, domain 1 0.9382 469 768 3.90.226.10
af_Q2G1C9_1_191_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.938 4 194 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A520D2I0-F1-model_v4 deleted 0.9947 475 772
AF-A0A520ITL8-F1-model_v4 Enoyl-CoA hydratase/isomerase family protein 0.9941 512 772 GO:0016853
AF-A0A358HSP4-F1-model_v4 3-hydroxyacyl-CoA dehydrogenase 0.9922 542 772
AF-A0A520ITL8-F1-model_v4 Enoyl-CoA hydratase/isomerase family protein 0.9903 512 772 GO:0016853
AF-A0A520D2I0-F1-model_v4 deleted 0.9848 475 772

Feature Viewer

pLDDT pTM Quality
92.55 0.9 High
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Predicted Structure (AlphaFold2)

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