F206008

General Info

Members Datasets Scaffolds Average Seq Length
149 100 145 399

Family's Representative Sequence

Representative Sequence 3300013296|Ga0157374_10000002|Ga0157374_10000002363
Length 435
Sequence MHLEEGIRLIIFHCSVEFKYNKTKKTEIWKFIYLYVSHMNPIVLTPQQARKIILHAAGLHRRAPFGKGREAVYKLIDHLGFVQLDTNYTVERAHHHVIASRVPDYKLEWLEELQADGRLFEYFTSDTGFLPMENYRFSKPVMEGFAVNRKPMTAAETNLMSKVLDRISREGPLMVKDFENDRQEASSGWWDWRPSKVALERLYLDGRLMITRTRDFQKLYDLPMNLVPDDIDTTTPSPVEFARHVIRRGLKAMGLASASQVAWKARYVKDNVIKKELENLAAEGAICKVAVEGVKTAVHYMLPEYKNKKIELSGEAFILSPWDIVNVFRRRLRDFFDFDYQIECFVPEPKRKYGYFSLPVLVGDRFVARMDSKADRKQRTLLIHNFHFEPGKLTKPEIGKISDALTAFAKFNQCREISFAKTNNKTQLKAIKDGL

Samples

Sample ID Description Type Environment
1 2818991444 Filimonas endophytica 3197 Isolate Unclassified
2 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
3 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
4 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
5 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
6 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
7 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
8 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
9 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
10 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
11 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
12 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
13 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
14 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
15 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
16 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
17 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
18 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
19 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
20 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
21 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
22 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
23 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
24 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
27 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
30 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
31 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
32 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
33 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
37 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
38 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
39 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
40 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
41 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
42 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
43 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
46 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
47 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
48 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
49 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
50 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
51 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
52 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
53 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
54 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
56 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
71 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
72 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
73 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
74 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
75 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
76 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
77 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
78 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
79 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
80 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
81 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
82 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
83 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
84 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
85 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
86 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
87 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
88 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
89 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
90 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
91 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
92 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
93 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
94 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
95 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
96 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
97 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
98 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
99 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
100 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.32
Metatranscriptomes 0
Isolates 2.68

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 25.5
Nodule 0
Rhizoplane 0
Rhizosphere 62.42
Stem 0
Stem Tuber 0
Unclassified 12.08

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10000227 3300001979 Bacteria 23804
2 JGI24739J22299_10000101 3300001989 Bacteria 25628
3 JGI25154J39366_1000001 3300002738 Bacteria 483450
4 JGI25157J39369_1002351 3300002741 Unclassified 4863
5 JGI25153J46596_10005374 3300003215 Bacteria 6729
6 rootH2_10018538 3300003320 Bacteria 11760
7 rootH2_10019167 3300003320 Bacteria 10007
8 rootH2_10034875 3300003320 Bacteria 13583
9 rootH1_10032098 3300003323 Bacteria 8504
10 JGI25160J50197_1006862 3300003354 Bacteria 4548
11 JGI25160J50197_1012627 3300003354 Bacteria 2922
12 Ga0055528_1000599 3300003790 Bacteria 27118
13 Ga0055530_10001407 3300003791 Bacteria 17698
14 Ga0055531_10001234 3300003794 Bacteria 19452
15 Ga0065165_1000127 3300005262 Bacteria 129837
16 Ga0070670_100155157 3300005331 Bacteria 1982
17 Ga0068869_100251199 3300005334 Bacteria 1412
18 Ga0070666_10071320 3300005335 Bacteria 2364
19 Ga0070691_10014161 3300005341 Bacteria 3657
20 Ga0070667_100084468 3300005367 Unclassified 2721
21 Ga0070681_10053752 3300005458 Bacteria 4013
22 Ga0070699_100189680 3300005518 Bacteria 1826
23 Ga0068853_100113969 3300005539 Bacteria 2404
24 Ga0068853_100125880 3300005539 Bacteria 2289
25 Ga0070665_100002043 3300005548 Bacteria 22717
26 Ga0068855_100006320 3300005563 Bacteria 14437
27 Ga0068855_100087484 3300005563 Bacteria 3601
28 Ga0068855_100219471 3300005563 Unclassified 2133
29 Ga0068857_100000234 3300005577 Bacteria 37184
30 Ga0068854_100016151 3300005578 Bacteria 4969
31 Ga0068856_100055727 3300005614 Bacteria 3901
32 Ga0068852_100000661 3300005616 Bacteria 22523
33 Ga0068851_10017385 3300005834 Bacteria 3453
34 Ga0068863_100003266 3300005841 Bacteria 16010
35 Ga0068860_100000059 3300005843 Bacteria 196400
36 Ga0068860_100002303 3300005843 Bacteria 20070
37 Ga0097621_100088974 3300006237 Bacteria 2581
38 Ga0105240_10000105 3300009093 Bacteria 172035
39 Ga0105240_10001161 3300009093 Bacteria 46154
40 Ga0105240_10001547 3300009093 Bacteria 39045
41 Ga0105240_10004596 3300009093 Bacteria 20919
42 Ga0105240_10014532 3300009093 Bacteria 10746
43 Ga0105240_10107582 3300009093 Bacteria 3380
44 Ga0105240_10270747 3300009093 Bacteria 1956
45 Ga0114129_10066919 3300009147 Bacteria 5010
46 Ga0105241_10044168 3300009174 Bacteria 3376
47 Ga0105241_10046565 3300009174 Unclassified 3294
48 Ga0105237_10001273 3300009545 Bacteria 33627
49 Ga0105237_10031040 3300009545 Bacteria 5420
50 Ga0105237_10059893 3300009545 Unclassified 3809
51 Ga0105237_10065292 3300009545 Bacteria 3636
52 Ga0105237_10169194 3300009545 Bacteria 2185
53 Ga0105238_10004202 3300009551 Bacteria 14294
54 Ga0105238_10014762 3300009551 Bacteria 7899
55 Ga0105238_10052307 3300009551 Bacteria 4105
56 Ga0105249_10006902 3300009553 Bacteria 9898
57 Ga0105249_10211375 3300009553 Bacteria 1904
58 Ga0105239_10000128 3300010375 Bacteria 107095
59 Ga0105239_10000779 3300010375 Bacteria 45211
60 Ga0105239_10001195 3300010375 Bacteria 35500
61 Ga0105239_10006538 3300010375 Bacteria 13506
62 Ga0105239_10069617 3300010375 Bacteria 3866
63 Ga0105239_10339600 3300010375 Unclassified 1695
64 Ga0157374_10000002 3300013296 Bacteria 1054226
65 Ga0157378_10011072 3300013297 Bacteria 7895
66 Ga0163162_10000396 3300013306 Bacteria 39981
67 Ga0157372_10000406 3300013307 Bacteria 47333
68 Ga0157372_10011222 3300013307 Bacteria 9530
69 Ga0157375_10198282 3300013308 Bacteria 2163
70 Ga0157376_10233190 3300014969 Bacteria 1711
71 Ga0209436_100704 3300025208 Bacteria 13991
72 Ga0209646_1000002 3300025246 Bacteria 1425781
73 Ga0209026_1000450 3300025250 Bacteria 32815
74 Ga0209673_1000034 3300025273 Bacteria 328788
75 Ga0209130_1003734 3300025284 Bacteria 6232
76 Ga0209564_1002532 3300025295 Bacteria 14101
77 Ga0209564_1004146 3300025295 Bacteria 9087
78 Ga0209758_1008045 3300025297 Bacteria 6959
79 Ga0209758_1008140 3300025297 Bacteria 6892
80 Ga0209050_1000959 3300025298 Bacteria 37200
81 Ga0207426_1000002 3300025302 Bacteria 1249660
82 Ga0207426_1000177 3300025302 Bacteria 159426
83 Ga0207426_1000329 3300025302 Bacteria 90476
84 Ga0207426_1000444 3300025302 Bacteria 66461
85 Ga0207426_1010247 3300025302 Bacteria 3648
86 Ga0207426_1043360 3300025302 Bacteria 1382
87 Ga0209257_1000005 3300025304 Bacteria 1592528
88 Ga0209257_1004814 3300025304 Bacteria 10032
89 Ga0207695_10000193 3300025913 Bacteria 172070
90 Ga0207695_10001198 3300025913 Bacteria 44620
91 Ga0207695_10039630 3300025913 Bacteria 5061
92 Ga0207695_10111899 3300025913 Bacteria 2709
93 Ga0207671_10006613 3300025914 Bacteria 10284
94 Ga0207671_10011937 3300025914 Bacteria 7023
95 Ga0207671_10014425 3300025914 Bacteria 6246
96 Ga0207671_10100980 3300025914 Bacteria 2185
97 Ga0207694_10027472 3300025924 Bacteria 4334
98 Ga0207689_10266079 3300025942 Bacteria 1419
99 Ga0207667_10000151 3300025949 Bacteria 104054
100 Ga0207712_10003954 3300025961 Bacteria 9362
101 Ga0207640_10075554 3300025981 Bacteria 2284
102 Ga0207639_10096846 3300026041 Bacteria 2375
103 Ga0207639_10187224 3300026041 Bacteria 1765
104 Ga0207676_10064414 3300026095 Bacteria 2915
105 Ga0207674_10000935 3300026116 Bacteria 38035
106 Ga0207698_10003227 3300026142 Bacteria 9793
107 Ga0268266_10000016 3300028379 Bacteria 629101
108 Ga0268264_10000015 3300028381 Bacteria 508501
109 Ga0268264_10014860 3300028381 Bacteria 6393
110 Ga0307511_10004941 3300030521 Bacteria 13598
111 Ga0307513_10018895 3300031456 Bacteria 8219
112 Ga0307509_10020842 3300031507 Bacteria 7433
113 Ga0307508_10007092 3300031616 Bacteria 10447
114 Ga0307507_10075997 3300033179 Bacteria 3000
115 Ga0307510_10020219 3300033180 Bacteria 7785
116 Ga0395905_0000702 3300037471 Bacteria 44428
117 Ga0395905_0008197 3300037471 Bacteria 10318
118 Ga0395901_0094527 3300038443 Bacteria 3132
119 Ga0466969_0000696 3300044656 Bacteria 18235
120 Ga0466972_0000035 3300044658 Bacteria 147516
121 Ga0466972_0000062 3300044658 Bacteria 108852
122 Ga0466972_0020572 3300044658 Bacteria 3297
123 Ga0466959_0000029 3300045049 Bacteria 112104
124 Ga0495606_0028860 3300046507 Bacteria 3906
125 Ga0495648_0002284 3300046524 Bacteria 17886
126 Ga0495668_0004392 3300046616 Bacteria 10044
127 Ga0495687_000004 3300047443 Bacteria 779298
128 Ga0501047_0068304 3300049581 Bacteria 3423
129 nmdc:mga0k408_97244_c1 3300050493 Bacteria 1733
130 nmdc:mga05p37_161443_c1 3300050507 Bacteria 2737
131 Ga0500578_0000003 3300053086 Bacteria 266033
132 Ga0500646_0008812 3300053090 Bacteria 2584
133 Ga0500583_0004232 3300053092 Bacteria 4646
134 Ga0500650_0013235 3300053098 Bacteria 3457
135 Ga0500608_000182 3300053122 Bacteria 25762
136 Ga0500618_000004 3300053125 Bacteria 293180
137 Ga0500588_0019721 3300053146 Bacteria 1798
138 Ga0500616_0030418 3300053153 Bacteria 2965
139 Ga0500622_0000017 3300053156 Bacteria 332114
140 Ga0500622_0000065 3300053156 Bacteria 125090
141 Ga0500622_0002896 3300053156 Bacteria 11968
142 Ga0500622_0003568 3300053156 Bacteria 10276
143 Ga0500636_0038745 3300053177 Unclassified 2819
144 Ga0500637_0013102 3300053178 Bacteria 4337
145 Ga0466962_0029183 3300061719 Bacteria 2640

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300050493 nmdc:mga0k408_97244_c1 nmdc:mga0k408_97244_c1_292_1419 369
2 3300005518 Ga0070699_100189680 Ga0070699_1001896801 374
3 3300037471 Ga0395905_0000702 Ga0395905_0000702_28551_29732 382
4 3300038443 Ga0395901_0094527 Ga0395901_0094527_1431_2615 383
5 3300037471 Ga0395905_0008197 Ga0395905_0008197_7819_9012 385
6 3300003320 rootH2_10019167 rootH2_100191674 390
7 3300009545 Ga0105237_10031040 Ga0105237_100310406 393
8 3300025914 Ga0207671_10006613 Ga0207671_100066137 393
9 iso_pu_bacteria 2884791551 2884794617 393
10 iso_pu_bacteria 2929921140 2929922753 393
11 iso_pu_bacteria 8003151029 8003154544 393
12 3300005539 Ga0068853_100113969 Ga0068853_1001139691 394
13 3300026041 Ga0207639_10096846 Ga0207639_100968461 394
14 3300003794 Ga0055531_10001234 Ga0055531_1000123410 395
15 3300005331 Ga0070670_100155157 Ga0070670_1001551571 395
16 3300005367 Ga0070667_100084468 Ga0070667_1000844683 395
17 3300005834 Ga0068851_10017385 Ga0068851_100173853 395
18 3300005841 Ga0068863_100003266 Ga0068863_1000032667 395
19 3300009553 Ga0105249_10006902 Ga0105249_100069021 395
20 3300013297 Ga0157378_10011072 Ga0157378_100110727 395
21 3300013308 Ga0157375_10198282 Ga0157375_101982822 395
22 3300025304 Ga0209257_1000005 Ga0209257_10000051103 395
23 3300025961 Ga0207712_10003954 Ga0207712_100039544 395
24 3300026095 Ga0207676_10064414 Ga0207676_100644142 395
25 3300044658 Ga0466972_0000062 Ga0466972_0000062_30496_31683 395
26 3300053086 Ga0500578_0000003 Ga0500578_0000003_71995_73185 395
27 3300053122 Ga0500608_000182 Ga0500608_000182_9978_11165 395
28 3300053146 Ga0500588_0019721 Ga0500588_0019721_250_1437 395
29 3300053156 Ga0500622_0000017 Ga0500622_0000017_283402_284655 395
30 3300053156 Ga0500622_0000065 Ga0500622_0000065_79131_80384 395
31 3300003320 rootH2_10034875 rootH2_100348754 396
32 3300005563 Ga0068855_100006320 Ga0068855_10000632013 396
33 3300005563 Ga0068855_100219471 Ga0068855_1002194712 396
34 3300009093 Ga0105240_10107582 Ga0105240_101075823 396
35 3300009093 Ga0105240_10270747 Ga0105240_102707472 396
36 3300009545 Ga0105237_10059893 Ga0105237_100598932 396
37 3300009545 Ga0105237_10169194 Ga0105237_101691942 396
38 3300010375 Ga0105239_10000128 Ga0105239_1000012835 396
39 3300010375 Ga0105239_10006538 Ga0105239_1000653810 396
40 3300025914 Ga0207671_10100980 Ga0207671_101009802 396
41 3300033180 Ga0307510_10020219 Ga0307510_100202192 396
42 3300044656 Ga0466969_0000696 Ga0466969_0000696_5714_6907 396
43 3300045049 Ga0466959_0000029 Ga0466959_0000029_105238_106431 396
44 3300049581 Ga0501047_0068304 Ga0501047_0068304_111_1301 396
45 3300053156 Ga0500622_0003568 Ga0500622_0003568_7711_8913 396
46 3300001979 JGI24740J21852_10000227 JGI24740J21852_100002272 397
47 3300001989 JGI24739J22299_10000101 JGI24739J22299_1000010110 397
48 3300002738 JGI25154J39366_1000001 JGI25154J39366_100000127 397
49 3300002741 JGI25157J39369_1002351 JGI25157J39369_10023513 397
50 3300003215 JGI25153J46596_10005374 JGI25153J46596_100053743 397
51 3300003320 rootH2_10018538 rootH2_100185384 397
52 3300003323 rootH1_10032098 rootH1_100320986 397
53 3300003354 JGI25160J50197_1006862 JGI25160J50197_10068621 397
54 3300003354 JGI25160J50197_1012627 JGI25160J50197_10126273 397
55 3300003790 Ga0055528_1000599 Ga0055528_10005999 397
56 3300003791 Ga0055530_10001407 Ga0055530_1000140714 397
57 3300005262 Ga0065165_1000127 Ga0065165_100012742 397
58 3300005334 Ga0068869_100251199 Ga0068869_1002511991 397
59 3300005335 Ga0070666_10071320 Ga0070666_100713202 397
60 3300005341 Ga0070691_10014161 Ga0070691_100141613 397
61 3300005458 Ga0070681_10053752 Ga0070681_100537524 397
62 3300005539 Ga0068853_100125880 Ga0068853_1001258802 397
63 3300005548 Ga0070665_100002043 Ga0070665_10000204318 397
64 3300005563 Ga0068855_100087484 Ga0068855_1000874843 397
65 3300005577 Ga0068857_100000234 Ga0068857_10000023417 397
66 3300005578 Ga0068854_100016151 Ga0068854_1000161512 397
67 3300005614 Ga0068856_100055727 Ga0068856_1000557272 397
68 3300005616 Ga0068852_100000661 Ga0068852_1000006618 397
69 3300005843 Ga0068860_100000059 Ga0068860_100000059132 397
70 3300005843 Ga0068860_100002303 Ga0068860_1000023038 397
71 3300006237 Ga0097621_100088974 Ga0097621_1000889742 397
72 3300009093 Ga0105240_10000105 Ga0105240_10000105112 397
73 3300009093 Ga0105240_10001161 Ga0105240_100011615 397
74 3300009093 Ga0105240_10001547 Ga0105240_1000154719 397
75 3300009093 Ga0105240_10004596 Ga0105240_100045964 397
76 3300009093 Ga0105240_10014532 Ga0105240_1001453210 397
77 3300009147 Ga0114129_10066919 Ga0114129_100669193 397
78 3300009174 Ga0105241_10044168 Ga0105241_100441683 397
79 3300009174 Ga0105241_10046565 Ga0105241_100465654 397
80 3300009545 Ga0105237_10001273 Ga0105237_1000127313 397
81 3300009545 Ga0105237_10065292 Ga0105237_100652923 397
82 3300009551 Ga0105238_10004202 Ga0105238_1000420213 397
83 3300009551 Ga0105238_10014762 Ga0105238_100147624 397
84 3300009551 Ga0105238_10052307 Ga0105238_100523073 397
85 3300009553 Ga0105249_10211375 Ga0105249_102113752 397
86 3300010375 Ga0105239_10000779 Ga0105239_1000077912 397
87 3300010375 Ga0105239_10001195 Ga0105239_1000119526 397
88 3300010375 Ga0105239_10069617 Ga0105239_100696171 397
89 3300010375 Ga0105239_10339600 Ga0105239_103396002 397
90 3300013296 Ga0157374_10000002 Ga0157374_10000002363 397
91 3300013306 Ga0163162_10000396 Ga0163162_100003969 397
92 3300013307 Ga0157372_10000406 Ga0157372_1000040639 397
93 3300013307 Ga0157372_10011222 Ga0157372_1001122211 397
94 3300014969 Ga0157376_10233190 Ga0157376_102331902 397
95 3300025208 Ga0209436_100704 Ga0209436_1007044 397
96 3300025246 Ga0209646_1000002 Ga0209646_100000228 397
97 3300025250 Ga0209026_1000450 Ga0209026_100045028 397
98 3300025273 Ga0209673_1000034 Ga0209673_10000342 397
99 3300025284 Ga0209130_1003734 Ga0209130_10037344 397
100 3300025295 Ga0209564_1002532 Ga0209564_10025322 397
101 3300025295 Ga0209564_1004146 Ga0209564_10041463 397
102 3300025297 Ga0209758_1008045 Ga0209758_10080456 397
103 3300025297 Ga0209758_1008140 Ga0209758_10081402 397
104 3300025298 Ga0209050_1000959 Ga0209050_100095928 397
105 3300025302 Ga0207426_1000002 Ga0207426_1000002296 397
106 3300025302 Ga0207426_1000177 Ga0207426_100017733 397
107 3300025302 Ga0207426_1000329 Ga0207426_100032936 397
108 3300025302 Ga0207426_1000444 Ga0207426_100044425 397
109 3300025302 Ga0207426_1010247 Ga0207426_10102472 397
110 3300025302 Ga0207426_1043360 Ga0207426_10433602 397
111 3300025304 Ga0209257_1004814 Ga0209257_10048144 397
112 3300025913 Ga0207695_10000193 Ga0207695_1000019326 397
113 3300025913 Ga0207695_10001198 Ga0207695_1000119819 397
114 3300025913 Ga0207695_10039630 Ga0207695_100396303 397
115 3300025913 Ga0207695_10111899 Ga0207695_101118992 397
116 3300025914 Ga0207671_10011937 Ga0207671_100119375 397
117 3300025914 Ga0207671_10014425 Ga0207671_100144252 397
118 3300025924 Ga0207694_10027472 Ga0207694_100274724 397
119 3300025942 Ga0207689_10266079 Ga0207689_102660792 397
120 3300025949 Ga0207667_10000151 Ga0207667_1000015134 397
121 3300025981 Ga0207640_10075554 Ga0207640_100755542 397
122 3300026041 Ga0207639_10187224 Ga0207639_101872242 397
123 3300026116 Ga0207674_10000935 Ga0207674_1000093534 397
124 3300026142 Ga0207698_10003227 Ga0207698_100032274 397
125 3300028379 Ga0268266_10000016 Ga0268266_10000016515 397
126 3300028381 Ga0268264_10000015 Ga0268264_10000015341 397
127 3300028381 Ga0268264_10014860 Ga0268264_100148603 397
128 3300030521 Ga0307511_10004941 Ga0307511_1000494113 397
129 3300031456 Ga0307513_10018895 Ga0307513_100188953 397
130 3300031507 Ga0307509_10020842 Ga0307509_100208423 397
131 3300031616 Ga0307508_10007092 Ga0307508_100070926 397
132 3300033179 Ga0307507_10075997 Ga0307507_100759972 397
133 3300044658 Ga0466972_0000035 Ga0466972_0000035_42052_43254 397
134 3300044658 Ga0466972_0020572 Ga0466972_0020572_1050_2252 397
135 3300046507 Ga0495606_0028860 Ga0495606_0028860_1028_2224 397
136 3300046524 Ga0495648_0002284 Ga0495648_0002284_3028_4221 397
137 3300046616 Ga0495668_0004392 Ga0495668_0004392_5449_6648 397
138 3300047443 Ga0495687_000004 Ga0495687_000004_679007_680203 397
139 3300050507 nmdc:mga05p37_161443_c1 nmdc:mga05p37_161443_c1_920_2119 397
140 3300053090 Ga0500646_0008812 Ga0500646_0008812_144_1337 397
141 3300053092 Ga0500583_0004232 Ga0500583_0004232_1118_2311 397
142 3300053098 Ga0500650_0013235 Ga0500650_0013235_1144_2337 397
143 3300053125 Ga0500618_000004 Ga0500618_000004_225437_226630 397
144 3300053153 Ga0500616_0030418 Ga0500616_0030418_1055_2248 397
145 3300053156 Ga0500622_0002896 Ga0500622_0002896_3613_4806 397
146 3300053177 Ga0500636_0038745 Ga0500636_0038745_782_1975 397
147 3300053178 Ga0500637_0013102 Ga0500637_0013102_1298_2500 397
148 3300061719 Ga0466962_0029183 Ga0466962_0029183_1043_2278 397
149 iso_pu_bacteria 2818991444 2819588510 397

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06224

AlkZ-like

DNA glycosylase AlkZ-like

76

411

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
1s3j-assembly1.cif.gz_B x-ray crystal structure of yuso protein from bacillus subtilis 0.8177 204 266
5j6x-assembly2.cif.gz_B crystal structure of the apo-zalpha of zebrafish pkz 0.8139 199 264
3gfj-assembly1.cif.gz_A-2 crystal structure of the st1710 mutant (r89a) protein 0.8026 203 264
7l1i-assembly1.cif.gz_A-2 crystal structure of the marr family transcriptional regulator from acineotobacter baumannii bound to indole 3 acetic acid 0.8016 204 268
3gfm-assembly1.cif.gz_A-2 crystal structure of the st1710 mutant (k91a) protein 0.8004 203 264
ID Description Score Start End Superfamily
5j6xB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8139 199 264 1.10.10.10
2a61A00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8017 204 264 1.10.10.10
2yr2A00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.7848 203 268 1.10.10.10
5j6xB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.7818 199 264 1.10.10.10
1s3jB02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.7795 204 264 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A1H8VYS1-F1-model_v4 Winged helix-turn-helix domain-containing protein 0.9742 1 397
AF-A0A1H8VYS1-F1-model_v4 Winged helix-turn-helix domain-containing protein 0.9718 1 397
AF-A0A4Q5S3F8-F1-model_v4 Winged helix-turn-helix domain-containing protein 0.9682 1 208
AF-A0A6N4E8W0-F1-model_v4 deleted 0.963 235 397
AF-A0A4Q5S3F8-F1-model_v4 Winged helix-turn-helix domain-containing protein 0.9591 1 208

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pLDDT pTM Quality
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Predicted Structure (AlphaFold2)

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