F204574

General Info

Members Datasets Scaffolds Average Seq Length
148 115 109 440

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2816332139|2816509696
Length 503
Sequence AENRPARNRTDPDLRNSPDLRDSGAGPAPGADDPATRADDARAELAQPGAGRVEDVVPFGAALRAWFAISLQTFGGPAGQIAVMQRALVDDRRWIGQRRFLHALNYCMLLPGPEAHQLAIYVGWLLNGLRGGLAAGILFVLPGMVALLALSAIYVGFGDTTAVAALFTGLGAAVIAIVVQAVVRVGRRALTHPVLVGLAVAAFVALAAFGVPFPIVIGAAALLGWLAARRIPALARAGGHAPAADDGPAPLIPDDHLHTEAPSRRRTVTILAVGLLVWTAPVALIALITGVSSVYTTQGVFFSGAALVTFGGAYAVLAYVAQQAVTNFGWLTATDMTRGLALAESTPGPLIMVVQFVAFLGAYANPGPFDPWTAGIVASLLVTWVTFVPSFLFIFLGAPYIEALRSNRTLAAALTGITAAVVGVIANLALYFAVTTLFAATRHITTGPLSLTIPELTSLRPVPLLIAAVAALLVFATRWSVLRVLGVCATLGLAAGLLGLPVA

Samples

Sample ID Description Type Environment
1 2534681796 Rhizobium grahamii CCGE 502 Isolate Nodule
2 2582581304 Rhizobium sp. YR519 Isolate Rhizosphere
3 2585427594 Rhizobium sp. YR528 Isolate Rhizosphere
4 2600254933 Rhizobium sp. NFR12 Isolate Rhizoplane
5 2622736605 Geodermatophilus ruber DSM 45317 Isolate Rhizosphere
6 2643221558 Rhizobium sp. Root149 Isolate Unclassified
7 2643221590 Nocardioides sp. Root682 Isolate Unclassified
8 2643221617 Nocardioides sp. Root79 Isolate Unclassified
9 2643221620 Nocardioides sp. Root240 Isolate Unclassified
10 2643221637 Rhizobium sp. Root1212 Isolate Unclassified
11 2643221653 Rhizobium sp. Root1240 Isolate Unclassified
12 2643221715 Mycobacterium sp. Root265 Isolate Unclassified
13 2643221718 Rhizobium sp. Root268 Isolate Unclassified
14 2643221719 Rhizobium sp. Root274 Isolate Unclassified
15 2657244999 Sinorhizobium sojae CCBAU 05684 Isolate Unclassified
16 2738541272 Promicromonospora sp. AC04 Isolate Unclassified
17 2738541305 Nocardioides sp. CF167 Isolate Unclassified
18 2738543027 Promicromonospora sp. CF082 Isolate Unclassified
19 2758568621 Promicromonospora sukumoe SAI-064 Isolate Unclassified
20 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
21 2802429268 Sinorhizobium sojae CCBAU 05684 Isolate Unclassified
22 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
23 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
24 2818991272 Rhizobium sp. SLBN-4 Isolate Unclassified
25 2854896431 Neorhizobium alkalisoli DSM 21826 Isolate Unclassified
26 2854916844 Neorhizobium huautlense DSM 21817 Isolate Unclassified
27 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
28 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
29 2899803654 Agrobacterium sp. a22-2 Isolate Unclassified
30 2915358134 Pseudonocardia pini CAP47R Isolate Unclassified
31 2919171160 Neorhizobium sp. 2083 Isolate Unclassified
32 2989771324 Rhizobium rhizolycopersici DBTS2 Isolate Rhizosphere
33 2989776772 Rhizobium glycinendophyticum CL12 Isolate Unclassified
34 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
35 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
36 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
37 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
38 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
39 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
40 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
41 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
42 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
43 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
44 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
45 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
46 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
47 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
48 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
49 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
50 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
51 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
52 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
53 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
54 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
55 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
56 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
58 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
66 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
68 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
69 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
70 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
71 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
72 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
73 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
74 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
75 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
76 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
77 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
78 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
79 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
80 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
81 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
82 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
83 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
84 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
85 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
86 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
87 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
88 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
89 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
90 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
91 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
92 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
93 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
94 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
95 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
96 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
97 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
98 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
99 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
100 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
101 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
102 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
103 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
104 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
105 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
106 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
107 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
108 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
109 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
110 8005246636 Rhizobium wuzhouense W44 Isolate Rhizosphere
111 8005542996 Rhizobium grahamii CCGM3 Isolate Unclassified
112 8005658619 Rhizobium terrae CC-HIH110 Isolate Unclassified
113 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule
114 8056054917 Glycomyces luteolus NEAU-A15 Isolate Rhizosphere
115 8056579771 Promicromonospora iranensis UTMC 00792 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 73.65
Metatranscriptomes 0
Isolates 26.35

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 16.89
Nodule 1.35
Rhizoplane 2.03
Rhizosphere 55.41
Stem 0
Stem Tuber 0
Unclassified 24.32

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10296474 3300003323 Bacteria 1603
2 JGI25407J50210_10004718 3300003373 Bacteria 3325
3 JGI25407J50210_10010749 3300003373 Bacteria 2332
4 Ga0055536_1004402 3300003781 Bacteria 7217
5 Ga0055531_10007700 3300003794 Bacteria 5820
6 Ga0065165_1013558 3300005262 Bacteria 3231
7 Ga0070683_100166271 3300005329 Bacteria 2093
8 Ga0070667_100068481 3300005367 Bacteria 3020
9 Ga0070698_100007487 3300005471 Bacteria 11815
10 Ga0068860_100001637 3300005843 Bacteria 24007
11 Ga0081455_10000568 3300005937 Bacteria 48117
12 Ga0081538_10004218 3300005981 Bacteria 13340
13 Ga0081538_10007591 3300005981 Bacteria 9354
14 Ga0081539_10004206 3300005985 Bacteria 16247
15 Ga0075368_10014706 3300006042 Bacteria 2895
16 Ga0075363_100021104 3300006048 Bacteria 3276
17 Ga0075363_100049576 3300006048 Bacteria 2236
18 Ga0075364_10003714 3300006051 Bacteria 8708
19 Ga0075364_10019206 3300006051 Bacteria 4288
20 Ga0075364_10091304 3300006051 Bacteria 2020
21 Ga0097621_100204967 3300006237 Bacteria 1713
22 Ga0075370_10016264 3300006353 Bacteria 4001
23 Ga0075370_10020061 3300006353 Bacteria 3648
24 Ga0105239_10014730 3300010375 Bacteria 8672
25 Ga0157370_10052652 3300013104 Bacteria 3886
26 Ga0157372_10059271 3300013307 Bacteria 4281
27 Ga0182008_10035579 3300014497 Bacteria 2493
28 Ga0209129_1001414 3300025258 Bacteria 13417
29 Ga0209676_1000092 3300025292 Bacteria 250453
30 Ga0209025_1034704 3300025294 Bacteria 2296
31 Ga0209050_1020970 3300025298 Bacteria 2405
32 Ga0209051_1001336 3300025303 Bacteria 21465
33 Ga0209257_1008003 3300025304 Bacteria 6172
34 Ga0207661_10145876 3300025944 Bacteria 2042
35 Ga0207712_10040555 3300025961 Bacteria 3196
36 Ga0207658_10057106 3300025986 Bacteria 2899
37 Ga0207675_100194769 3300026118 Bacteria 1945
38 Ga0209813_10001493 3300027866 Bacteria 5256
39 Ga0268264_10002168 3300028381 Bacteria 17511
40 Ga0307517_10076620 3300028786 Bacteria 2918
41 Ga0316181_1126879 3300030744 Bacteria 2025
42 Ga0316182_1008979 3300030745 Bacteria 8265
43 Ga0307408_100065497 3300031548 Bacteria 2665
44 Ga0307514_10017282 3300031649 Bacteria 5939
45 Ga0307405_10002475 3300031731 Bacteria 8153
46 Ga0307405_10045420 3300031731 Bacteria 2692
47 Ga0307413_10057408 3300031824 Bacteria 2380
48 Ga0307410_10031618 3300031852 Bacteria 3399
49 Ga0307410_10036172 3300031852 Bacteria 3213
50 Ga0307410_10073869 3300031852 Bacteria 2373
51 Ga0307406_10003023 3300031901 Bacteria 9148
52 Ga0307406_10090421 3300031901 Bacteria 2060
53 Ga0307407_10015659 3300031903 Bacteria 3757
54 Ga0307407_10028576 3300031903 Bacteria 2983
55 Ga0307407_10032343 3300031903 Bacteria 2843
56 Ga0307407_10060275 3300031903 Bacteria 2214
57 Ga0307407_10075842 3300031903 Bacteria 2017
58 Ga0307409_100003856 3300031995 Bacteria 8281
59 Ga0307409_100019031 3300031995 Bacteria 4637
60 Ga0307409_100025989 3300031995 Bacteria 4120
61 Ga0307409_100034445 3300031995 Bacteria 3698
62 Ga0307409_100042529 3300031995 Bacteria 3404
63 Ga0307409_100052674 3300031995 Bacteria 3122
64 Ga0307409_100060815 3300031995 Bacteria 2948
65 Ga0307409_100123435 3300031995 Bacteria 2198
66 Ga0307416_100000989 3300032002 Bacteria 15036
67 Ga0307416_100021074 3300032002 Bacteria 4670
68 Ga0307416_100056082 3300032002 Bacteria 3177
69 Ga0307416_100060759 3300032002 Bacteria 3080
70 Ga0307415_100011658 3300032126 Bacteria 5043
71 Ga0307415_100064002 3300032126 Bacteria 2558
72 Ga0307415_100085327 3300032126 Bacteria 2268
73 Ga0307415_100092489 3300032126 Bacteria 2193
74 Ga0307415_100127084 3300032126 Bacteria 1923
75 Ga0395901_0011536 3300038443 Bacteria 8954
76 Ga0439466_0009023 3300041411 Bacteria 3744
77 Ga0439431_0001339 3300041997 Bacteria 5427
78 Ga0439445_0003935 3300042004 Bacteria 3348
79 Ga0466972_0036687 3300044658 Bacteria 2397
80 Ga0466970_0055195 3300044765 Bacteria 2121
81 Ga0466970_0072709 3300044765 Bacteria 1850
82 Ga0466960_0000824 3300044901 Bacteria 10915
83 Ga0466960_0010998 3300044901 Bacteria 3770
84 Ga0466960_0028007 3300044901 Bacteria 2576
85 Ga0451576_0083115 3300045051 Bacteria 3331
86 Ga0495662_0013654 3300046476 Bacteria 3955
87 Ga0495606_0002243 3300046507 Bacteria 23003
88 Ga0495608_0000278 3300046511 Bacteria 36436
89 Ga0495667_0002424 3300046559 Bacteria 12449
90 Ga0495668_0000614 3300046616 Bacteria 43070
91 Ga0495625_0001526 3300046660 Bacteria 27701
92 Ga0495636_0112729 3300047318 Bacteria 1198
93 Ga0495687_002944 3300047443 Bacteria 12934
94 Ga0495626_0000060 3300048091 Bacteria 145172
95 Ga0496102_0226748 3300048905 Bacteria 1762
96 Ga0496104_0000177 3300048907 Bacteria 56749
97 Ga0496118_0029854 3300048921 Bacteria 4563
98 Ga0496121_0000459 3300048924 Bacteria 80085
99 Ga0496122_0108926 3300048925 Bacteria 1825
100 Ga0496123_0097868 3300048926 Bacteria 1717
101 nmdc:mga03n38_40930_c1 3300050490 Bacteria 2016
102 nmdc:mga00v17_133_c1 3300050491 Bacteria 7552
103 nmdc:mga00v17_37865_c1 3300050491 Bacteria 2882
104 nmdc:mga00v17_74305_c1 3300050491 Bacteria 2112
105 nmdc:mga04h51_6491_c1 3300050495 Bacteria 3036
106 nmdc:mga06r32_259833_c1 3300050510 Bacteria 1724
107 Ga0500644_0000019 3300053088 Bacteria 102598
108 Ga0500616_0000191 3300053153 Bacteria 100381
109 Ga0466962_0032471 3300061719 Bacteria 2500

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300031995 Ga0307409_100042529 Ga0307409_1000425293 333
2 3300047318 Ga0495636_0112729 Ga0495636_0112729_52_1188 364
3 3300031995 Ga0307409_100034445 Ga0307409_1000344455 378
4 3300046511 Ga0495608_0000278 Ga0495608_0000278_31913_33298 380
5 3300046559 Ga0495667_0002424 Ga0495667_0002424_3266_4651 380
6 3300031903 Ga0307407_10075842 Ga0307407_100758422 386
7 3300032126 Ga0307415_100064002 Ga0307415_1000640023 387
8 3300031903 Ga0307407_10032343 Ga0307407_100323431 391
9 3300038443 Ga0395901_0011536 Ga0395901_0011536_2963_4312 396
10 3300003373 JGI25407J50210_10004718 JGI25407J50210_100047184 397
11 3300005981 Ga0081538_10007591 Ga0081538_100075911 397
12 3300025292 Ga0209676_1000092 Ga0209676_1000092167 398
13 3300025298 Ga0209050_1020970 Ga0209050_10209703 398
14 3300050510 nmdc:mga06r32_259833_c1 nmdc:mga06r32_259833_c1_132_1517 399
15 3300031548 Ga0307408_100065497 Ga0307408_1000654973 401
16 3300006048 Ga0075363_100021104 Ga0075363_1000211042 403
17 3300031731 Ga0307405_10002475 Ga0307405_100024757 403
18 3300031901 Ga0307406_10003023 Ga0307406_100030235 403
19 3300031903 Ga0307407_10060275 Ga0307407_100602752 403
20 3300031995 Ga0307409_100003856 Ga0307409_1000038566 403
21 3300031995 Ga0307409_100019031 Ga0307409_1000190314 403
22 3300032002 Ga0307416_100000989 Ga0307416_1000009892 403
23 3300050490 nmdc:mga03n38_40930_c1 nmdc:mga03n38_40930_c1_721_1980 403
24 3300031824 Ga0307413_10057408 Ga0307413_100574082 405
25 3300032126 Ga0307415_100092489 Ga0307415_1000924892 405
26 3300014497 Ga0182008_10035579 Ga0182008_100355792 406
27 3300031852 Ga0307410_10073869 Ga0307410_100738693 406
28 3300048924 Ga0496121_0000459 Ga0496121_0000459_1374_2717 408
29 3300041411 Ga0439466_0009023 Ga0439466_0009023_1184_2617 410
30 3300006353 Ga0075370_10020061 Ga0075370_100200613 411
31 3300031995 Ga0307409_100123435 Ga0307409_1001234352 411
32 3300032126 Ga0307415_100127084 Ga0307415_1001270842 411
33 3300031852 Ga0307410_10036172 Ga0307410_100361723 412
34 3300044901 Ga0466960_0010998 Ga0466960_0010998_948_2198 413
35 3300006042 Ga0075368_10014706 Ga0075368_100147062 414
36 3300027866 Ga0209813_10001493 Ga0209813_100014933 414
37 3300050495 nmdc:mga04h51_6491_c1 nmdc:mga04h51_6491_c1_1077_2408 414
38 3300005367 Ga0070667_100068481 Ga0070667_1000684812 416
39 3300025986 Ga0207658_10057106 Ga0207658_100571062 416
40 3300032002 Ga0307416_100056082 Ga0307416_1000560822 419
41 3300041997 Ga0439431_0001339 Ga0439431_0001339_86_1519 419
42 3300042004 Ga0439445_0003935 Ga0439445_0003935_555_1988 419
43 3300050491 nmdc:mga00v17_74305_c1 nmdc:mga00v17_74305_c1_755_2095 419
44 3300005843 Ga0068860_100001637 Ga0068860_10000163710 420
45 3300006051 Ga0075364_10003714 Ga0075364_100037147 420
46 3300028381 Ga0268264_10002168 Ga0268264_100021688 420
47 3300030744 Ga0316181_1126879 Ga0316181_11268792 420
48 3300030745 Ga0316182_1008979 Ga0316182_10089796 420
49 3300050491 nmdc:mga00v17_37865_c1 nmdc:mga00v17_37865_c1_545_1945 420
50 3300031903 Ga0307407_10015659 Ga0307407_100156593 421
51 3300031995 Ga0307409_100025989 Ga0307409_1000259891 421
52 3300032126 Ga0307415_100085327 Ga0307415_1000853273 421
53 3300006051 Ga0075364_10019206 Ga0075364_100192064 422
54 3300028786 Ga0307517_10076620 Ga0307517_100766203 422
55 3300050491 nmdc:mga00v17_133_c1 nmdc:mga00v17_133_c1_5360_6703 422
56 3300031649 Ga0307514_10017282 Ga0307514_100172826 423
57 3300031995 Ga0307409_100052674 Ga0307409_1000526741 423
58 3300032126 Ga0307415_100011658 Ga0307415_1000116582 423
59 3300048925 Ga0496122_0108926 Ga0496122_0108926_135_1550 424
60 3300048926 Ga0496123_0097868 Ga0496123_0097868_216_1631 424
61 3300005985 Ga0081539_10004206 Ga0081539_100042069 425
62 3300003373 JGI25407J50210_10010749 JGI25407J50210_100107493 427
63 3300005981 Ga0081538_10004218 Ga0081538_100042189 427
64 3300006048 Ga0075363_100049576 Ga0075363_1000495762 427
65 3300006051 Ga0075364_10091304 Ga0075364_100913042 427
66 3300005262 Ga0065165_1013558 Ga0065165_10135582 430
67 3300031903 Ga0307407_10028576 Ga0307407_100285764 431
68 3300031852 Ga0307410_10031618 Ga0307410_100316183 432
69 3300031995 Ga0307409_100060815 Ga0307409_1000608153 432
70 3300045051 Ga0451576_0083115 Ga0451576_0083115_1281_2579 432
71 3300005471 Ga0070698_100007487 Ga0070698_1000074878 433
72 iso_pu_bacteria 2643221558 2643810468 434
73 iso_pu_bacteria 8005658619 8005661818 434
74 iso_pu_bacteria 2643221653 2644297481 435
75 iso_pu_bacteria 2643221719 2644655734 435
76 iso_pu_bacteria 2818991272 2819243142 435
77 iso_pu_bacteria 2989776772 2989777600 435
78 iso_pu_bacteria 8005246636 8005247235 435
79 3300032002 Ga0307416_100060759 Ga0307416_1000607593 436
80 iso_pu_bacteria 2854896431 2854898366 436
81 iso_pu_bacteria 2899803654 2899804401 436
82 3300003781 Ga0055536_1004402 Ga0055536_10044024 437
83 3300003794 Ga0055531_10007700 Ga0055531_100077005 437
84 3300025303 Ga0209051_1001336 Ga0209051_100133623 437
85 3300025304 Ga0209257_1008003 Ga0209257_10080036 437
86 3300053153 Ga0500616_0000191 Ga0500616_0000191_97098_98435 437
87 iso_pu_bacteria 2854916844 2854919082 437
88 iso_pu_bacteria 2919171160 2919171982 437
89 3300046507 Ga0495606_0002243 Ga0495606_0002243_19275_20708 438
90 3300046616 Ga0495668_0000614 Ga0495668_0000614_2188_3621 438
91 3300046660 Ga0495625_0001526 Ga0495625_0001526_738_2171 438
92 3300048091 Ga0495626_0000060 Ga0495626_0000060_31565_32998 438
93 iso_pu_bacteria 2582581304 2585259493 438
94 iso_pu_bacteria 2585427594 2585844566 438
95 iso_pu_bacteria 2643221637 2644206609 438
96 iso_pu_bacteria 2643221718 2644650256 438
97 3300010375 Ga0105239_10014730 Ga0105239_100147307 439
98 3300031731 Ga0307405_10045420 Ga0307405_100454202 439
99 3300044901 Ga0466960_0000824 Ga0466960_0000824_6736_8097 439
100 3300006353 Ga0075370_10016264 Ga0075370_100162642 440
101 iso_pu_bacteria 2600254933 2600374794 440
102 3300025961 Ga0207712_10040555 Ga0207712_100405552 441
103 3300026118 Ga0207675_100194769 Ga0207675_1001947692 441
104 3300032002 Ga0307416_100021074 Ga0307416_1000210743 441
105 iso_pu_bacteria 2534681796 2535515180 441
106 iso_pu_bacteria 8005542996 8005543857 441
107 3300053088 Ga0500644_0000019 Ga0500644_0000019_68731_70089 442
108 3300013104 Ga0157370_10052652 Ga0157370_100526523 443
109 3300025258 Ga0209129_1001414 Ga0209129_10014143 443
110 3300025294 Ga0209025_1034704 Ga0209025_10347041 443
111 3300048905 Ga0496102_0226748 Ga0496102_0226748_195_1574 444
112 iso_pu_bacteria 2895427314 2895429801 445
113 3300005329 Ga0070683_100166271 Ga0070683_1001662712 446
114 3300025944 Ga0207661_10145876 Ga0207661_101458762 446
115 3300046476 Ga0495662_0013654 Ga0495662_0013654_490_1890 447
116 iso_pu_bacteria 2643221617 2644101816 447
117 iso_pu_bacteria 2643221620 2644115878 447
118 iso_pu_bacteria 2738541305 2738868893 447
119 iso_pu_bacteria 2773857762 2774396722 447
120 iso_pu_bacteria 2811994878 2812349563 447
121 iso_pu_bacteria 2891968417 2891969413 447
122 3300044658 Ga0466972_0036687 Ga0466972_0036687_898_2256 448
123 3300044765 Ga0466970_0055195 Ga0466970_0055195_26_1390 448
124 3300044765 Ga0466970_0072709 Ga0466970_0072709_395_1759 448
125 3300044901 Ga0466960_0028007 Ga0466960_0028007_67_1425 448
126 3300048921 Ga0496118_0029854 Ga0496118_0029854_2553_3923 448
127 3300061719 Ga0466962_0032471 Ga0466962_0032471_241_1605 448
128 iso_pu_bacteria 2643221590 2643960065 448
129 iso_pu_bacteria 2657244999 2657681980 448
130 iso_pu_bacteria 2802429268 2804750998 448
131 3300005937 Ga0081455_10000568 Ga0081455_1000056843 449
132 3300013307 Ga0157372_10059271 Ga0157372_100592713 449
133 3300047443 Ga0495687_002944 Ga0495687_002944_10586_11989 449
134 iso_pu_bacteria 2738541272 2738696428 449
135 iso_pu_bacteria 2738543027 2739325576 449
136 iso_pu_bacteria 2758568621 2760622431 449
137 iso_pu_bacteria 2915358134 2915364981 449
138 iso_pu_bacteria 8056054917 8056055599 449
139 iso_pu_bacteria 8056579771 8056583654 449
140 3300003323 rootH1_10296474 rootH1_102964741 450
141 3300006237 Ga0097621_100204967 Ga0097621_1002049672 450
142 3300031901 Ga0307406_10090421 Ga0307406_100904212 450
143 3300048907 Ga0496104_0000177 Ga0496104_0000177_42514_43941 450
144 iso_pu_bacteria 2622736605 2623502133 450
145 iso_pu_bacteria 2643221715 2644637985 450
146 iso_pu_bacteria 2816332139 2816509696 450
147 iso_pu_bacteria 2989771324 2989774043 450
148 iso_pu_bacteria 8055412473 8055414513 450

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02417

Chromate_transp

Chromate transporter

61

225

0.97

PF02417

Chromate_transp

Chromate transporter

296

493

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
3mxl-assembly1.cif.gz_B crystal structure of nitrososynthase from micromonospora carbonacea var. africana 0.278 245 372
8ght-assembly1.cif.gz_B cryo-electron microscopy structure of the zinc transporter from bordetella bronchiseptica 0.2754 11 434
8ght-assembly1.cif.gz_B cryo-electron microscopy structure of the zinc transporter from bordetella bronchiseptica 0.2728 11 434
5tsb-assembly1.cif.gz_A crystal structure of the zrt-/irt-like protein from bordetella bronchiseptica with bound cd2+ 0.2605 118 381
7z6m-assembly1.cif.gz_A-2 crystal structure of zn2+-transporter bbzip in a cadmium bound state 0.2572 113 385
ID Description Score Start End Superfamily
af_A0A1D6KB92_269_431_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.3328 220 359 1.20.1250.20
af_Q54E68_44_188_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.3216 218 374 1.20.1250.20
af_P0AAY1_1_126_1.20.120.160 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);HPT domain 0.3194 216 353 1.20.120.160
af_P9WJW9_258_425_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.3178 214 378 1.20.1250.20
af_P0AAY1_1_126_1.20.120.160 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);HPT domain 0.3034 216 353 1.20.120.160
ID Description Score Start End GO Terms
AF-A0A3N5TC38-F1-model_v4 Chromate efflux transporter 0.953 6 420 GO:0005886
GO:0015109
AF-A0A2V6A8V5-F1-model_v4 Chromate transporter 0.9507 4 449 GO:0005886
GO:0015109
AF-L8JYX2-F1-model_v4 Chromate transport protein ChrA 0.9483 37 449 GO:0005886
GO:0015109
AF-A0A3A0D7Z2-F1-model_v4 Chromate transporter 0.9458 1 450 GO:0005886
GO:0015109
AF-A0A3A0D7Z2-F1-model_v4 Chromate transporter 0.9438 1 450 GO:0005886
GO:0015109

Feature Viewer

pLDDT pTM Quality
85.57 0.84 High
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Predicted Structure (AlphaFold2)

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