F203846

General Info

Members Datasets Scaffolds Average Seq Length
148 108 296 366

Family's Representative Sequence

Representative Sequence 3300039437|Ga0436365_0530931|Ga0436365_0530931_5725_6861
Length 378
Sequence MAAVDPGDEKNTPPMVAARRSPVTTALITSCLREELQARLVVLGQPAYRASQVLHGIYRRRARDFAGLSDLPAALRAQLAAEFVFPALTLVRVLGARDTTQKFLFRLSDGQLIESVLIPASPALYGEASDRRTLCVSSQVGCAYGCKFCASGLDGWTRNLQAGEIVEQVLQAEALGGNRVDNLVFMGMGEPLANFDNLLRAIAILNDAEWGLGLGARRMTVSTSGLAPQIRQLADQPRQIRLAISLHGATDEVRSQIMPVNRKYPLAALLDACRYWRSHKKQRLTFEFILIADLNDSPAQAQALAALANELAAKVNLIPYNTVAGLPWLRPPEARCEAFLRTLRARGVAATLRREKGHDIDAACGQLRRQTMQGENGG

Samples

Sample ID Description Type Environment
1 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
2 3300001977 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5 Metagenome Rhizosphere
3 3300002077 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3 Metagenome Rhizosphere
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
7 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
8 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
9 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
10 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
11 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
12 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
13 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
14 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
15 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
16 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
17 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
18 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
19 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
20 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
21 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
22 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
26 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
29 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
30 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
31 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
32 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
33 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
36 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
37 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
38 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
39 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
40 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
41 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
42 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
43 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
44 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
45 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
46 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
47 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
48 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
49 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
50 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
51 3300025290 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (version 2) Metagenome Rhizosphere
52 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
74 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
75 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
76 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
77 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
78 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
79 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
80 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
81 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
82 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
83 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
84 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
85 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
86 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
87 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
88 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
89 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
90 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
91 3300042130 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030L_E14_070516_97 Metagenome Rhizosphere
92 3300042144 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624F_E14_070516_89 Metagenome Rhizosphere
93 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
94 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
95 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
96 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
97 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
98 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
99 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
101 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
102 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
103 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
104 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
105 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
106 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
107 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
108 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.76
Nodule 0
Rhizoplane 1.35
Rhizosphere 83.11
Stem 0
Stem Tuber 0
Unclassified 1.35

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0436365_0530931 3300039437 Bacteria 35243
2 JGI24746J21847_1000080 3300001977 Bacteria 10383
3 JGI24744J21845_10003080 3300002077 Bacteria 3417
4 rootH2_10001039 3300003320 Bacteria 81374
5 rootH2_10059120 3300003320 Bacteria 3179
6 rootL2_10056047 3300003322 Bacteria 8420
7 JGI25405J52794_10001456 3300003911 Bacteria 3893
8 Ga0065704_10186281 3300005289 Bacteria 1196
9 Ga0065712_10115220 3300005290 Bacteria 1750
10 Ga0065715_10004475 3300005293 Bacteria 5164
11 Ga0065715_10239409 3300005293 Bacteria 1205
12 Ga0070658_10006730 3300005327 Bacteria 9313
13 Ga0070658_10066710 3300005327 Bacteria 2940
14 Ga0070690_100066199 3300005330 Bacteria 2338
15 Ga0070689_100009609 3300005340 Bacteria 6864
16 Ga0070689_100133489 3300005340 Bacteria 1992
17 Ga0070661_100002066 3300005344 Bacteria 13821
18 Ga0070661_100157799 3300005344 Bacteria 1717
19 Ga0070711_100036517 3300005439 Bacteria 3292
20 Ga0070708_100303991 3300005445 Bacteria 1502
21 Ga0070662_100001412 3300005457 Bacteria 14822
22 Ga0068867_100002128 3300005459 Bacteria 13902
23 Ga0070706_100014263 3300005467 Bacteria 7344
24 Ga0070706_100094666 3300005467 Bacteria 2771
25 Ga0070707_100022786 3300005468 Bacteria 5922
26 Ga0070707_100042947 3300005468 Bacteria 4328
27 Ga0070698_100003506 3300005471 Bacteria 17260
28 Ga0070698_100009539 3300005471 Bacteria 10391
29 Ga0070698_100013263 3300005471 Bacteria 8720
30 Ga0070698_100025039 3300005471 Bacteria 6220
31 Ga0070699_100015646 3300005518 Bacteria 6516
32 Ga0070697_100003353 3300005536 Bacteria 12307
33 Ga0070697_100195780 3300005536 Bacteria 1716
34 Ga0070665_100144226 3300005548 Bacteria 2385
35 Ga0068855_100013156 3300005563 Bacteria 9980
36 Ga0070664_100002075 3300005564 Bacteria 16005
37 Ga0068858_100031362 3300005842 Bacteria 4936
38 Ga0068858_100073659 3300005842 Bacteria 3170
39 Ga0068860_100000576 3300005843 Bacteria 44149
40 Ga0068860_100043458 3300005843 Bacteria 4287
41 Ga0081455_10001872 3300005937 Bacteria 25307
42 Ga0081455_10016935 3300005937 Bacteria 7007
43 Ga0081455_10054574 3300005937 Bacteria 3404
44 Ga0081539_10019235 3300005985 Bacteria 4685
45 Ga0070717_10199123 3300006028 Bacteria 1754
46 Ga0070712_100163567 3300006175 Bacteria 1720
47 Ga0075362_10042653 3300006177 Bacteria 2006
48 Ga0075436_100035708 3300006914 Bacteria 3428
49 Ga0105240_10000412 3300009093 Bacteria 79783
50 Ga0105245_10258793 3300009098 Bacteria 1693
51 Ga0105243_10003011 3300009148 Bacteria 13908
52 Ga0105237_10006408 3300009545 Bacteria 13060
53 Ga0105249_10022074 3300009553 Bacteria 5700
54 Ga0099796_10089959 3300010159 Bacteria 1140
55 Ga0105239_10015195 3300010375 Bacteria 8532
56 Ga0105239_10086420 3300010375 Bacteria 3457
57 Ga0105239_10233501 3300010375 Bacteria 2064
58 Ga0105239_10763283 3300010375 Bacteria 1107
59 Ga0105246_10016454 3300011119 Bacteria 4684
60 Ga0157373_10001032 3300013100 Bacteria 21476
61 Ga0157371_10074048 3300013102 Bacteria 2412
62 Ga0157370_10000415 3300013104 Bacteria 53917
63 Ga0157374_10000160 3300013296 Bacteria 62026
64 Ga0157378_10238392 3300013297 Bacteria 1737
65 Ga0163162_10213724 3300013306 Bacteria 2058
66 Ga0157372_10218823 3300013307 Bacteria 2207
67 Ga0157376_10001916 3300014969 Bacteria 13888
68 Ga0157376_10018271 3300014969 Bacteria 5370
69 Ga0213876_10000779 3300021384 Bacteria 21764
70 Ga0213876_10011728 3300021384 Bacteria 4676
71 Ga0207673_1005267 3300025290 Bacteria 1573
72 Ga0209050_1000490 3300025298 Bacteria 68371
73 Ga0207697_10001162 3300025315 Bacteria 14457
74 Ga0207697_10001294 3300025315 Bacteria 13739
75 Ga0207692_10042090 3300025898 Bacteria 2265
76 Ga0207699_10089847 3300025906 Bacteria 1926
77 Ga0207645_10002545 3300025907 Bacteria 14269
78 Ga0207705_10045422 3300025909 Bacteria 3157
79 Ga0207705_10051389 3300025909 Bacteria 2966
80 Ga0207684_10024895 3300025910 Bacteria 5100
81 Ga0207684_10078023 3300025910 Bacteria 2817
82 Ga0207671_10154663 3300025914 Bacteria 1773
83 Ga0207693_10029525 3300025915 Unclassified 4330
84 Ga0207657_10040647 3300025919 Bacteria 4119
85 Ga0207649_10053988 3300025920 Bacteria 2499
86 Ga0207649_10079565 3300025920 Bacteria 2118
87 Ga0207646_10141008 3300025922 Bacteria 2171
88 Ga0207706_10007861 3300025933 Bacteria 9842
89 Ga0207709_10001879 3300025935 Bacteria 13895
90 Ga0207670_10117512 3300025936 Bacteria 1927
91 Ga0207679_10010040 3300025945 Bacteria 6084
92 Ga0207658_10002575 3300025986 Bacteria 13170
93 Ga0207648_10004760 3300026089 Bacteria 13860
94 Ga0207698_10130156 3300026142 Bacteria 2149
95 Ga0268265_10290180 3300028380 Bacteria 1468
96 Ga0268264_10001424 3300028381 Bacteria 22372
97 Ga0265331_10003755 3300031250 Bacteria 9649
98 Ga0265327_10003888 3300031251 Bacteria 13751
99 Ga0265327_10004418 3300031251 Bacteria 12461
100 Ga0307408_100000014 3300031548 Bacteria 377369
101 Ga0307406_10000117 3300031901 Bacteria 46339
102 Ga0307407_10000225 3300031903 Bacteria 16830
103 Ga0307412_10000057 3300031911 Bacteria 145184
104 Ga0307414_10000019 3300032004 Bacteria 235390
105 Ga0307411_10218365 3300032005 Bacteria 1477
106 Ga0373931_0015102 3300035691 Bacteria 3785
107 Ga0373947_0032869 3300035725 Bacteria 3060
108 Ga0373937_0062847 3300036401 Bacteria 3414
109 Ga0395898_0114544 3300037466 Unclassified 2584
110 Ga0436364_1504028 3300037853 Bacteria 2088
111 Ga0395901_0003735 3300038443 Bacteria 15340
112 Ga0395901_0288092 3300038443 Bacteria 1705
113 Ga0436365_0302585 3300039437 Bacteria 2713
114 Ga0436365_0379833 3300039437 Bacteria 8140
115 Ga0436365_1112867 3300039437 Bacteria 50005
116 Ga0436365_1287296 3300039437 Bacteria 12739
117 Ga0436365_1392086 3300039437 Bacteria 2472
118 Ga0436360_1187429 3300039438 Bacteria 2563
119 Ga0436361_0006758 3300039447 Bacteria 10394
120 Ga0436361_0058938 3300039447 Bacteria 13177
121 Ga0436361_0202236 3300039447 Bacteria 1638
122 Ga0436361_0589004 3300039447 Bacteria 3064
123 Ga0436361_0756631 3300039447 Bacteria 4682
124 Ga0436361_1014615 3300039447 Bacteria 5119
125 Ga0436363_1006348 3300039450 Bacteria 15622
126 Ga0450890_000082 3300042127 Bacteria 16195
127 Ga0450892_002438 3300042130 Bacteria 1590
128 Ga0450889_001712 3300042144 Bacteria 2226
129 Ga0450893_0004484 3300042532 Bacteria 2225
130 Ga0451577_0001677 3300042876 Bacteria 28601
131 Ga0451576_0005907 3300045051 Bacteria 15187
132 Ga0495643_0000125 3300046522 Bacteria 124041
133 Ga0496109_0030181 3300048912 Bacteria 4860
134 Ga0496115_0033315 3300048918 Bacteria 4067
135 Ga0501032_0072947 3300049569 Bacteria 2287
136 Ga0501227_000130 3300049665 Bacteria 13500
137 Ga0501080_0007380 3300049742 Bacteria 9921
138 Ga0501080_0035918 3300049742 Bacteria 4626
139 Ga0501080_0088135 3300049742 Bacteria 2883
140 nmdc:mga05p37_4003_c1 3300050507 Bacteria 17226
141 Ga0500610_0061420 3300053079 Bacteria 1962
142 Ga0500555_000011 3300053103 Bacteria 259962
143 Ga0500559_0000655 3300053136 Bacteria 23262
144 Ga0500568_0011669 3300053139 Bacteria 4064
145 Ga0500616_0003284 3300053153 Bacteria 12479
146 Ga0500616_0022166 3300053153 Bacteria 3551
147 Ga0500616_0029263 3300053153 Bacteria 3032
148 Ga0500645_034191 3300053730 Bacteria 1518
149 Ga0436365_0530931
150 JGI24746J21847_1000080
151 JGI24744J21845_10003080
152 rootH2_10001039
153 rootH2_10059120
154 rootL2_10056047
155 JGI25405J52794_10001456
156 Ga0065704_10186281
157 Ga0065712_10115220
158 Ga0065715_10004475
159 Ga0065715_10239409
160 Ga0070658_10006730
161 Ga0070658_10066710
162 Ga0070690_100066199
163 Ga0070689_100009609
164 Ga0070689_100133489
165 Ga0070661_100002066
166 Ga0070661_100157799
167 Ga0070711_100036517
168 Ga0070708_100303991
169 Ga0070662_100001412
170 Ga0068867_100002128
171 Ga0070706_100014263
172 Ga0070706_100094666
173 Ga0070707_100022786
174 Ga0070707_100042947
175 Ga0070698_100003506
176 Ga0070698_100009539
177 Ga0070698_100013263
178 Ga0070698_100025039
179 Ga0070699_100015646
180 Ga0070697_100003353
181 Ga0070697_100195780
182 Ga0070665_100144226
183 Ga0068855_100013156
184 Ga0070664_100002075
185 Ga0068858_100031362
186 Ga0068858_100073659
187 Ga0068860_100000576
188 Ga0068860_100043458
189 Ga0081455_10001872
190 Ga0081455_10016935
191 Ga0081455_10054574
192 Ga0081539_10019235
193 Ga0070717_10199123
194 Ga0070712_100163567
195 Ga0075362_10042653
196 Ga0075436_100035708
197 Ga0105240_10000412
198 Ga0105245_10258793
199 Ga0105243_10003011
200 Ga0105237_10006408
201 Ga0105249_10022074
202 Ga0099796_10089959
203 Ga0105239_10015195
204 Ga0105239_10086420
205 Ga0105239_10233501
206 Ga0105239_10763283
207 Ga0105246_10016454
208 Ga0157373_10001032
209 Ga0157371_10074048
210 Ga0157370_10000415
211 Ga0157374_10000160
212 Ga0157378_10238392
213 Ga0163162_10213724
214 Ga0157372_10218823
215 Ga0157376_10001916
216 Ga0157376_10018271
217 Ga0213876_10000779
218 Ga0213876_10011728
219 Ga0207673_1005267
220 Ga0209050_1000490
221 Ga0207697_10001162
222 Ga0207697_10001294
223 Ga0207692_10042090
224 Ga0207699_10089847
225 Ga0207645_10002545
226 Ga0207705_10045422
227 Ga0207705_10051389
228 Ga0207684_10024895
229 Ga0207684_10078023
230 Ga0207671_10154663
231 Ga0207693_10029525
232 Ga0207657_10040647
233 Ga0207649_10053988
234 Ga0207649_10079565
235 Ga0207646_10141008
236 Ga0207706_10007861
237 Ga0207709_10001879
238 Ga0207670_10117512
239 Ga0207679_10010040
240 Ga0207658_10002575
241 Ga0207648_10004760
242 Ga0207698_10130156
243 Ga0268265_10290180
244 Ga0268264_10001424
245 Ga0265331_10003755
246 Ga0265327_10003888
247 Ga0265327_10004418
248 Ga0307408_100000014
249 Ga0307406_10000117
250 Ga0307407_10000225
251 Ga0307412_10000057
252 Ga0307414_10000019
253 Ga0307411_10218365
254 Ga0373931_0015102
255 Ga0373947_0032869
256 Ga0373937_0062847
257 Ga0395898_0114544
258 Ga0436364_1504028
259 Ga0395901_0003735
260 Ga0395901_0288092
261 Ga0436365_0302585
262 Ga0436365_0379833
263 Ga0436365_1112867
264 Ga0436365_1287296
265 Ga0436365_1392086
266 Ga0436360_1187429
267 Ga0436361_0006758
268 Ga0436361_0058938
269 Ga0436361_0202236
270 Ga0436361_0589004
271 Ga0436361_0756631
272 Ga0436361_1014615
273 Ga0436363_1006348
274 Ga0450890_000082
275 Ga0450892_002438
276 Ga0450889_001712
277 Ga0450893_0004484
278 Ga0451577_0001677
279 Ga0451576_0005907
280 Ga0495643_0000125
281 Ga0496109_0030181
282 Ga0496115_0033315
283 Ga0501032_0072947
284 Ga0501227_000130
285 Ga0501080_0007380
286 Ga0501080_0035918
287 Ga0501080_0088135
288 nmdc:mga05p37_4003_c1
289 Ga0500610_0061420
290 Ga0500555_000011
291 Ga0500559_0000655
292 Ga0500568_0011669
293 Ga0500616_0003284
294 Ga0500616_0022166
295 Ga0500616_0029263
296 Ga0500645_034191

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF21016

RlmN_N

Ribosomal RNA large subunit methyltransferase N-terminal domain

28

85

0.94

PF04055

Radical_SAM

Radical SAM superfamily

136

303

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
6fz6-assembly2.cif.gz_B crystal structure of a radical sam methyltransferase from sphaerobacter thermophilus 0.9311 8 347
6fz6-assembly2.cif.gz_B crystal structure of a radical sam methyltransferase from sphaerobacter thermophilus 0.9153 8 347
3rfa-assembly2.cif.gz_A x-ray structure of rlmn from escherichia coli in complex with s-adenosylmethionine 0.8913 7 338
4pl1-assembly2.cif.gz_A x-ray crystal structure of c118a rlmn from escherichia coli with s-adenosylmethionine 0.8911 7 338
4pl1-assembly2.cif.gz_A x-ray crystal structure of c118a rlmn from escherichia coli with s-adenosylmethionine 0.8886 7 338
ID Description Score Start End Superfamily
af_A0A1D6MYU6_82_194_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9486 115 221 3.20.20.70
af_Q2FZ66_80_363_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9279 70 356 3.20.20.70
af_A0A1D6FPJ6_15_105_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9228 193 274 3.20.20.70
6fz6B02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9217 70 347 3.20.20.70
4pl1B01 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1; 0.9204 7 68 1.10.150.530
ID Description Score Start End GO Terms
AF-A0A3D2JKG7-F1-model_v4 deleted 0.9764 184 287
AF-A0A7V4J2A9-F1-model_v4 Probable dual-specificity RNA methyltransferase RlmN (EC 2.1.1.192) (23S rRNA (adenine(2503)-C(2))-methyltransferase) (23S rRNA m2A2503 methyltransferase) (Ribosomal RNA large subunit methyltransferase N) (tRNA (adenine(37)-C(2))-methyltransferase) (tRNA m2A37 methyltransferase) 0.9689 2 334 GO:0000049
GO:0002935
GO:0005737
GO:0006355
GO:0019843
GO:0030488
GO:0046872
GO:0051539
GO:0070040
GO:0070475
AF-A0A3A0V329-F1-model_v4 Radical SAM protein 0.9662 160 314 GO:0003824
GO:0030488
GO:0046872
GO:0051539
GO:0070475
AF-A0A4U3AZC1-F1-model_v4 deleted 0.9659 169 298
AF-A0A2V5NT62-F1-model_v4 23S rRNA (Adenine(2503)-C(2))-methyltransferase RlmN 0.9624 58 277 GO:0008168
GO:0030488
GO:0046872
GO:0051539
GO:0070475

Map