F203685

General Info

Members Datasets Scaffolds Average Seq Length
148 70 296 81

Family's Representative Sequence

Representative Sequence 3300032133|Ga0316583_10103981|Ga0316583_101039812
Length 98
Sequence MCLGIPGQVVFLEVAGGLRMGKVRFGDIVREACLEYVPEVGEGDYVIVHAGFAISRVNEEEASRTYQLLEEMGQLEELDSDGAEVEDTEDTSPGGASH

Samples

Sample ID Description Type Environment
1 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
5 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
6 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
7 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
8 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
9 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
10 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
11 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
12 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
13 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
14 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
15 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
16 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
17 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
18 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
19 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
20 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
27 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
28 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
29 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
30 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
31 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
32 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
33 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
34 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
35 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
36 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
37 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
38 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
39 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
40 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
41 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
42 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
43 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
44 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
45 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
46 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
47 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
48 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
49 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
50 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
51 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
52 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
53 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
54 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
55 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
56 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
57 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
58 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
59 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
60 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
61 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
62 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
63 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
64 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
65 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
66 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
67 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
68 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
69 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
70 2740891818 Desulfofaba hansenii DSM 12642 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.95
Metatranscriptomes 3.38
Isolates 0.68

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 80.41
Stem 0
Stem Tuber 0
Unclassified 16.89

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0316583_10103981 3300032133 Unclassified 990
2 Ga0070658_10900811 3300005327 Bacteria 769
3 Ga0070683_100000021 3300005329 Bacteria 183486
4 Ga0070690_101172012 3300005330 Bacteria 612
5 Ga0070666_11234232 3300005335 Bacteria 557
6 Ga0070667_101207072 3300005367 Bacteria 708
7 Ga0070684_100000010 3300005535 Bacteria 183486
8 Ga0068855_100127640 3300005563 Bacteria 2907
9 Ga0068856_101849891 3300005614 Bacteria 615
10 Ga0068852_100669512 3300005616 Bacteria 1046
11 Ga0068859_101099963 3300005617 Bacteria 874
12 Ga0068864_102438488 3300005618 Bacteria 529
13 Ga0068863_100777374 3300005841 Bacteria 954
14 Ga0068858_101113433 3300005842 Bacteria 775
15 Ga0070717_10220402 3300006028 Bacteria 1667
16 Ga0157370_11209182 3300013104 Bacteria 682
17 Ga0157369_10468508 3300013105 Bacteria 1304
18 Ga0157372_10715534 3300013307 Bacteria 1165
19 Ga0157376_12093510 3300014969 Bacteria 604
20 Ga0157376_12243608 3300014969 Unclassified 585
21 Ga0207685_10018999 3300025905 Bacteria 2256
22 Ga0207661_10000012 3300025944 Bacteria 354345
23 Ga0207667_10125956 3300025949 Bacteria 2638
24 Ga0207658_10978357 3300025986 Bacteria 772
25 Ga0207702_10900224 3300026078 Bacteria 877
26 Ga0207698_10377202 3300026142 Bacteria 1348
27 Ga0265323_10095481 3300028653 Bacteria 989
28 Ga0265329_10190832 3300031242 Bacteria 672
29 Ga0265316_10174645 3300031344 Bacteria 1602
30 Ga0265316_11220143 3300031344 Unclassified 520
31 Ga0316575_10129976 3300031665 Bacteria 1033
32 Ga0316575_10392681 3300031665 Unclassified 594
33 Ga0316575_10491668 3300031665 Bacteria 532
34 Ga0316579_10020679 3300031691 Unclassified 2924
35 Ga0316579_10042233 3300031691 Bacteria 2118
36 Ga0316579_10188953 3300031691 Bacteria 996
37 Ga0316579_10377013 3300031691 Unclassified 686
38 Ga0316576_10005280 3300031727 Bacteria 7867
39 Ga0316576_10037839 3300031727 Bacteria 3456
40 Ga0316576_10056909 3300031727 Bacteria 2857
41 Ga0316576_10100692 3300031727 Bacteria 2159
42 Ga0316576_10612589 3300031727 Bacteria 794
43 Ga0316576_10687884 3300031727 Bacteria 742
44 Ga0316576_10896505 3300031727 Bacteria 635
45 Ga0316578_10087800 3300031728 Bacteria 1855
46 Ga0316578_10436145 3300031728 Unclassified 775
47 Ga0316577_10001601 3300031733 Bacteria 10787
48 Ga0316577_10030037 3300031733 Bacteria 3033
49 Ga0316577_10048183 3300031733 Bacteria 2380
50 Ga0316577_10079576 3300031733 Bacteria 1831
51 Ga0316577_10199163 3300031733 Bacteria 1132
52 Ga0316577_10208684 3300031733 Bacteria 1104
53 Ga0316577_10261900 3300031733 Unclassified 978
54 Ga0316577_10512841 3300031733 Bacteria 682
55 Ga0316577_10525285 3300031733 Bacteria 673
56 Ga0316577_10753406 3300031733 Bacteria 553
57 Ga0316583_10086517 3300032133 Unclassified 1094
58 Ga0316583_10201596 3300032133 Unclassified 691
59 Ga0316585_10000835 3300032137 Bacteria 7814
60 Ga0316585_10120112 3300032137 Unclassified 865
61 Ga0316585_10320989 3300032137 Bacteria 515
62 Ga0316580_10002049 3300032139 Bacteria 5463
63 Ga0316593_10057312 3300032168 Bacteria 1326
64 Ga0316586_1061717 3300033527 Bacteria 682
65 Ga0316588_1180687 3300033528 Unclassified 547
66 Ga0316588_1192345 3300033528 Bacteria 532
67 Ga0316596_1035093 3300033541 Bacteria 1311
68 Ga0373953_0049422 3300035117 Bacteria 1697
69 Ga0373954_0005004 3300035118 Bacteria 5722
70 Ga0373954_0086736 3300035118 Bacteria 1500
71 Ga0373957_0099057 3300035120 Bacteria 1165
72 Ga0373946_0570608 3300035171 Bacteria 585
73 Ga0373955_0270601 3300035172 Bacteria 1021
74 Ga0316574_0011700 3300035398 Bacteria 4996
75 Ga0316574_0039603 3300035398 Bacteria 2899
76 Ga0316574_0179738 3300035398 Bacteria 1361
77 Ga0373924_0123898 3300035410 Bacteria 1122
78 Ga0373935_0167591 3300035692 Bacteria 1501
79 Ga0373933_0096142 3300035724 Bacteria 1833
80 Ga0373933_0387271 3300035724 Bacteria 911
81 Ga0373933_0490557 3300035724 Bacteria 805
82 Ga0373937_0001319 3300036401 Bacteria 20754
83 Ga0373937_0061228 3300036401 Bacteria 3460
84 Ga0316582_0077600 3300036647 Bacteria 2162
85 Ga0316582_0089825 3300036647 Unclassified 2020
86 Ga0316582_0226741 3300036647 Bacteria 1279
87 Ga0316582_0487347 3300036647 Bacteria 850
88 Ga0316582_0714322 3300036647 Bacteria 688
89 Ga0316582_0816428 3300036647 Bacteria 639
90 Ga0316582_0866510 3300036647 Unclassified 618
91 Ga0316584_0005282 3300036712 Bacteria 8651
92 Ga0316584_0006870 3300036712 Bacteria 7733
93 Ga0316584_0142446 3300036712 Bacteria 1787
94 Ga0316584_0229103 3300036712 Bacteria 1363
95 Ga0316584_0311291 3300036712 Unclassified 1138
96 Ga0316584_0515282 3300036712 Bacteria 839
97 Ga0316584_0516296 3300036712 Bacteria 838
98 Ga0316584_0979255 3300036712 Bacteria 566
99 Ga0316581_0058671 3300037588 Bacteria 1180
100 Ga0316581_0258610 3300037588 Bacteria 535
101 Ga0400484_02272 3300038725 Bacteria 2514
102 Ga0400484_11215 3300038725 Unclassified 1063
103 Ga0400484_17307 3300038725 Bacteria 1705
104 Ga0400490_21568 3300038726 Bacteria 50818
105 Ga0400490_26087 3300038726 Bacteria 2962
106 Ga0400490_39622 3300038726 Bacteria 6105
107 Ga0400490_40385 3300038726 Unclassified 1026
108 Ga0400490_42130 3300038726 Bacteria 10146
109 Ga0400490_49011 3300038726 Bacteria 1978
110 Ga0400490_58477 3300038726 Bacteria 2190
111 Ga0400485_19867 3300038735 Bacteria 20910
112 Ga0400485_21110 3300038735 Bacteria 1178
113 Ga0400488_13491 3300038741 Bacteria 4180
114 Ga0400488_27460 3300038741 Bacteria 1650
115 Ga0400488_39402 3300038741 Bacteria 7878
116 Ga0400488_43771 3300038741 Unclassified 1155
117 Ga0400486_15513 3300038742 Bacteria 89826
118 Ga0400486_26720 3300038742 Bacteria 9377
119 Ga0400486_31635 3300038742 Bacteria 8888
120 Ga0400483_028973 3300039062 Unclassified 1003
121 Ga0400483_104166 3300039062 Unclassified 1114
122 Ga0400483_243215 3300039062 Bacteria 98015
123 Ga0400483_274110 3300039062 Bacteria 1458
124 Ga0400489_06367 3300039093 Bacteria 8111
125 Ga0400489_19193 3300039093 Bacteria 12708
126 Ga0400489_67469 3300039093 Bacteria 13260
127 Ga0400487_48240 3300039110 Bacteria 2853
128 Ga0400487_55318 3300039110 Bacteria 2211
129 Ga0451577_0541046 3300042876 Bacteria 1057
130 Ga0451577_0682278 3300042876 Bacteria 931
131 Ga0453683_0184231 3300044673 Bacteria 1324
132 Ga0453683_0471578 3300044673 Bacteria 813
133 Ga0453684_0000021 3300044712 Bacteria 873490
134 Ga0453684_0003270 3300044712 Bacteria 37005
135 Ga0453684_0023272 3300044712 Bacteria 9138
136 Ga0453684_0085757 3300044712 Bacteria 3911
137 Ga0453684_0738368 3300044712 Bacteria 1067
138 Ga0453684_0872094 3300044712 Bacteria 966
139 Ga0453684_0872460 3300044712 Bacteria 965
140 Ga0453684_1117127 3300044712 Unclassified 832
141 Ga0453684_2334796 3300044712 Unclassified 531
142 Ga0495592_0957332 3300046454 Unclassified 500
143 Ga0495653_0476136 3300046463 Bacteria 782
144 Ga0495645_0391012 3300046543 Unclassified 888
145 nmdc:mga0qj67_1379373_c1 3300050509 Unclassified 544
146 nmdc:mga06r32_188706_c1 3300050510 Bacteria 2048
147 Ga0495601_0397099 3300053077 Bacteria 894
148 2740992758 2740891818 Bacteria 6711283
149 Ga0316583_10103981
150 Ga0070658_10900811
151 Ga0070683_100000021
152 Ga0070690_101172012
153 Ga0070666_11234232
154 Ga0070667_101207072
155 Ga0070684_100000010
156 Ga0068855_100127640
157 Ga0068856_101849891
158 Ga0068852_100669512
159 Ga0068859_101099963
160 Ga0068864_102438488
161 Ga0068863_100777374
162 Ga0068858_101113433
163 Ga0070717_10220402
164 Ga0157370_11209182
165 Ga0157369_10468508
166 Ga0157372_10715534
167 Ga0157376_12093510
168 Ga0157376_12243608
169 Ga0207685_10018999
170 Ga0207661_10000012
171 Ga0207667_10125956
172 Ga0207658_10978357
173 Ga0207702_10900224
174 Ga0207698_10377202
175 Ga0265323_10095481
176 Ga0265329_10190832
177 Ga0265316_10174645
178 Ga0265316_11220143
179 Ga0316575_10129976
180 Ga0316575_10392681
181 Ga0316575_10491668
182 Ga0316579_10020679
183 Ga0316579_10042233
184 Ga0316579_10188953
185 Ga0316579_10377013
186 Ga0316576_10005280
187 Ga0316576_10037839
188 Ga0316576_10056909
189 Ga0316576_10100692
190 Ga0316576_10612589
191 Ga0316576_10687884
192 Ga0316576_10896505
193 Ga0316578_10087800
194 Ga0316578_10436145
195 Ga0316577_10001601
196 Ga0316577_10030037
197 Ga0316577_10048183
198 Ga0316577_10079576
199 Ga0316577_10199163
200 Ga0316577_10208684
201 Ga0316577_10261900
202 Ga0316577_10512841
203 Ga0316577_10525285
204 Ga0316577_10753406
205 Ga0316583_10086517
206 Ga0316583_10201596
207 Ga0316585_10000835
208 Ga0316585_10120112
209 Ga0316585_10320989
210 Ga0316580_10002049
211 Ga0316593_10057312
212 Ga0316586_1061717
213 Ga0316588_1180687
214 Ga0316588_1192345
215 Ga0316596_1035093
216 Ga0373953_0049422
217 Ga0373954_0005004
218 Ga0373954_0086736
219 Ga0373957_0099057
220 Ga0373946_0570608
221 Ga0373955_0270601
222 Ga0316574_0011700
223 Ga0316574_0039603
224 Ga0316574_0179738
225 Ga0373924_0123898
226 Ga0373935_0167591
227 Ga0373933_0096142
228 Ga0373933_0387271
229 Ga0373933_0490557
230 Ga0373937_0001319
231 Ga0373937_0061228
232 Ga0316582_0077600
233 Ga0316582_0089825
234 Ga0316582_0226741
235 Ga0316582_0487347
236 Ga0316582_0714322
237 Ga0316582_0816428
238 Ga0316582_0866510
239 Ga0316584_0005282
240 Ga0316584_0006870
241 Ga0316584_0142446
242 Ga0316584_0229103
243 Ga0316584_0311291
244 Ga0316584_0515282
245 Ga0316584_0516296
246 Ga0316584_0979255
247 Ga0316581_0058671
248 Ga0316581_0258610
249 Ga0400484_02272
250 Ga0400484_11215
251 Ga0400484_17307
252 Ga0400490_21568
253 Ga0400490_26087
254 Ga0400490_39622
255 Ga0400490_40385
256 Ga0400490_42130
257 Ga0400490_49011
258 Ga0400490_58477
259 Ga0400485_19867
260 Ga0400485_21110
261 Ga0400488_13491
262 Ga0400488_27460
263 Ga0400488_39402
264 Ga0400488_43771
265 Ga0400486_15513
266 Ga0400486_26720
267 Ga0400486_31635
268 Ga0400483_028973
269 Ga0400483_104166
270 Ga0400483_243215
271 Ga0400483_274110
272 Ga0400489_06367
273 Ga0400489_19193
274 Ga0400489_67469
275 Ga0400487_48240
276 Ga0400487_55318
277 Ga0451577_0541046
278 Ga0451577_0682278
279 Ga0453683_0184231
280 Ga0453683_0471578
281 Ga0453684_0000021
282 Ga0453684_0003270
283 Ga0453684_0023272
284 Ga0453684_0085757
285 Ga0453684_0738368
286 Ga0453684_0872094
287 Ga0453684_0872460
288 Ga0453684_1117127
289 Ga0453684_2334796
290 Ga0495592_0957332
291 Ga0495653_0476136
292 Ga0495645_0391012
293 nmdc:mga0qj67_1379373_c1
294 nmdc:mga06r32_188706_c1
295 Ga0495601_0397099
296 2740992758

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01455

HupF_HypC

HupF/HypC family

1

69

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
3vyt-assembly1.cif.gz_A-2 crystal structure of the hypc-hypd-hype complex (form i inward) 0.9628 3 58
3vyt-assembly1.cif.gz_A-2 crystal structure of the hypc-hypd-hype complex (form i inward) 0.9452 3 58
6my0-assembly2.cif.gz_B structure of 53bp1 tandem tudor domains with e1549p and d1550n mutations 0.8986 7 33
5j26-assembly1.cif.gz_A crystal structure of a 53bp1 tudor domain in complex with a ubiquitin variant 0.891 7 31
7d9j-assembly1.cif.gz_A spdh spermidine dehydrogenase y443a mutant 0.8625 7 33
ID Description Score Start End Superfamily
3vytA00 Mainly Beta;Roll;SH3 type barrels.; 0.9628 3 58 2.30.30.140
3vytA00 Mainly Beta;Roll;SH3 type barrels.; 0.9452 3 58 2.30.30.140
2z1cB00 Mainly Beta;Roll;SH3 type barrels.; 0.9077 2 73 2.30.30.140
af_Q57653_1_80_2.30.30.140 Mainly Beta;Roll;SH3 type barrels.; 0.8891 1 72 2.30.30.140
af_P0AAM7_1_79_2.30.30.140 Mainly Beta;Roll;SH3 type barrels.; 0.8825 1 73 2.30.30.140
ID Description Score Start End GO Terms
AF-A0A838Q9N6-F1-model_v4 HypC/HybG/HupF family hydrogenase formation chaperone 0.9972 1 73 GO:0005506
GO:0051604
GO:1902670
AF-A0A852VEA9-F1-model_v4 Hydrogenase expression/formation protein HypC 0.9857 1 73 GO:0005506
GO:0051604
GO:1902670
AF-A0A2W4IYM5-F1-model_v4 HypC/HybG/HupF family hydrogenase formation chaperone 0.9854 1 74 GO:0005506
GO:0051604
GO:1902670
AF-A0A7Y5QAW6-F1-model_v4 HypC/HybG/HupF family hydrogenase formation chaperone 0.9832 1 73 GO:0005506
GO:0051604
GO:1902670
AF-A0A5A7WMX2-F1-model_v4 HypC/HybG/HupF family hydrogenase formation chaperone 0.9807 1 73 GO:0005506
GO:0051604
GO:1902670

Map