F202966

General Info

Members Datasets Scaffolds Average Seq Length
148 113 296 343

Family's Representative Sequence

Representative Sequence 3300009093|Ga0105240_10029236|Ga0105240_100292365
Length 401
Sequence MTPEEEDLLDEEYWESLDQATFDLREKTPAAEGYWMPAEFERHDATWMLWPERPDNWRDAGRPAQEAVLNVAAALRHFETVHLGINPESFDKVRDSMPAGVYPASLEFDDIWVRDIGPTFVVSEQPDTLRSIQWRFNAWGGLYQPYAKDVTVPREISSDAFGREMRDRYAVPMVLEGGAIHVDGQGTVLVTEECVLNPNRNPGITRERVEAVLREYLGVHHFIWLGKGVFNDETSGHIDNLACFVGPGKVCLTWTDDKRDPQHAISLDAWERLNDARDALGRRLEVFKVPMPGPLYMTAEEARGLVPSESMKRRYAGDRLAASYVNFYFANGGIIMPLLDPRTDEQAAAVLRRACPDRLIVGVPAREILLGGGGIHCITQQIPSYEIARTRPGPEPGKKLH

Samples

Sample ID Description Type Environment
1 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
4 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
10 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
11 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
12 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
15 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
18 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
19 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
20 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
21 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
22 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
23 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
24 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
25 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
26 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
27 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
28 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
30 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
31 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
32 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
33 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
34 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
35 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
36 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
37 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
38 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
39 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
40 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
41 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
42 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
64 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
65 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
66 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
67 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
68 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
69 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
70 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
71 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
72 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
73 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
74 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
75 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
76 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
77 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
78 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
79 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
80 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
81 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
82 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
83 3300041492 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_2 MetaG Metagenome Unclassified
84 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
85 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
86 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
87 3300042011 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z062817_5204 Metagenome Rhizosphere
88 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
89 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
90 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
91 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
92 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
93 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
94 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
95 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
96 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
97 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
98 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
99 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
103 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
104 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
105 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
106 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
107 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
108 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
109 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
110 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
111 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere
112 2995463766 Streptacidiphilus fuscans NEAU-YB345 Isolate Unclassified
113 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.3
Metatranscriptomes 0.68
Isolates 2.03

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.19
Nodule 0
Rhizoplane 4.05
Rhizosphere 74.32
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105240_10029236 3300009093 Bacteria 7185
2 rootH1_10083627 3300003323 Bacteria 6218
3 Ga0065707_10081729 3300005295 Bacteria 59248
4 Ga0065707_10181383 3300005295 Bacteria 1416
5 Ga0070677_10011597 3300005333 Bacteria 3043
6 Ga0070682_100015378 3300005337 Bacteria 4433
7 Ga0070691_10056729 3300005341 Bacteria 1878
8 Ga0070671_100020247 3300005355 Bacteria 5424
9 Ga0070714_100004789 3300005435 Bacteria 10255
10 Ga0070711_100005261 3300005439 Bacteria 7722
11 Ga0070705_100001843 3300005440 Bacteria 10928
12 Ga0070700_100168683 3300005441 Bacteria 1514
13 Ga0070678_100325164 3300005456 Bacteria 1314
14 Ga0070681_10001582 3300005458 Bacteria 20207
15 Ga0070681_10219995 3300005458 Bacteria 1814
16 Ga0068867_100226232 3300005459 Bacteria 1510
17 Ga0070696_100000873 3300005546 Bacteria 19508
18 Ga0070665_100219426 3300005548 Bacteria 1902
19 Ga0068859_100162355 3300005617 Bacteria 2313
20 Ga0068863_100217228 3300005841 Bacteria 1841
21 Ga0068860_100008012 3300005843 Bacteria 10535
22 Ga0075365_10003850 3300006038 Bacteria 7836
23 Ga0075365_10057772 3300006038 Bacteria 2581
24 Ga0075365_10098557 3300006038 Bacteria 2000
25 Ga0075365_10118130 3300006038 Bacteria 1827
26 Ga0075365_10253138 3300006038 Bacteria 1238
27 Ga0075368_10010079 3300006042 Bacteria 3411
28 Ga0075363_100007282 3300006048 Bacteria 5074
29 Ga0075363_100051468 3300006048 Bacteria 2196
30 Ga0075363_100079071 3300006048 Bacteria 1796
31 Ga0075364_10003963 3300006051 Bacteria 8499
32 Ga0075364_10007996 3300006051 Bacteria 6302
33 Ga0075370_10045046 3300006353 Bacteria 2494
34 Ga0075428_100220386 3300006844 Bacteria 2049
35 Ga0097620_100162349 3300006931 Bacteria 2313
36 Ga0105250_10000036 3300009092 Bacteria 147009
37 Ga0105240_10037124 3300009093 Bacteria 6263
38 Ga0105240_10059090 3300009093 Bacteria 4786
39 Ga0111539_10359698 3300009094 Bacteria 1694
40 Ga0105243_10017369 3300009148 Bacteria 5438
41 Ga0105248_10120355 3300009177 Bacteria 2962
42 Ga0099796_10012419 3300010159 Bacteria 2405
43 Ga0157371_10163147 3300013102 Bacteria 1591
44 Ga0157370_10142280 3300013104 Bacteria 2235
45 Ga0157369_10008182 3300013105 Bacteria 11999
46 Ga0157372_10123419 3300013307 Bacteria 2977
47 Ga0157375_10082826 3300013308 Bacteria 3251
48 Ga0163163_10048142 3300014325 Bacteria 4191
49 Ga0163163_10286226 3300014325 Bacteria 1700
50 Ga0157379_10008661 3300014968 Bacteria 8860
51 Ga0163161_10032441 3300017792 Bacteria 3729
52 Ga0213876_10014502 3300021384 Bacteria 4176
53 Ga0209675_1031692 3300025291 Bacteria 1247
54 Ga0207696_1000135 3300025711 Bacteria 129665
55 Ga0207682_10039384 3300025893 Bacteria 1921
56 Ga0207645_10107039 3300025907 Bacteria 1808
57 Ga0207707_10182269 3300025912 Bacteria 1833
58 Ga0207695_10087307 3300025913 Bacteria 3142
59 Ga0207695_10152233 3300025913 Bacteria 2251
60 Ga0207662_10232227 3300025918 Bacteria 1205
61 Ga0207664_10000046 3300025929 Bacteria 140749
62 Ga0207690_10305560 3300025932 Bacteria 1246
63 Ga0207686_10097676 3300025934 Bacteria 1954
64 Ga0207704_10114863 3300025938 Bacteria 1828
65 Ga0207691_10165867 3300025940 Bacteria 1936
66 Ga0207691_10332801 3300025940 Bacteria 1301
67 Ga0207689_10074226 3300025942 Bacteria 2795
68 Ga0207679_10184017 3300025945 Bacteria 1731
69 Ga0207667_10039875 3300025949 Bacteria 5002
70 Ga0207678_10166213 3300026067 Bacteria 1884
71 Ga0207708_10111640 3300026075 Bacteria 2122
72 Ga0207708_10179112 3300026075 Bacteria 1683
73 Ga0207675_100090839 3300026118 Bacteria 2871
74 Ga0207675_100264687 3300026118 Bacteria 1667
75 Ga0207683_10254090 3300026121 Bacteria 1604
76 Ga0207698_10190849 3300026142 Bacteria 1825
77 Ga0268266_10172795 3300028379 Bacteria 1962
78 Ga0268264_10088183 3300028381 Bacteria 2669
79 Ga0265326_10000006 3300028558 Bacteria 233392
80 Ga0265334_10000040 3300028573 Bacteria 100264
81 Ga0265336_10009370 3300028666 Bacteria 3391
82 Ga0265338_10000661 3300028800 Bacteria 59507
83 Ga0265324_10001592 3300029957 Bacteria 12634
84 Ga0265770_1000630 3300030878 Bacteria 4875
85 Ga0307509_10099944 3300031507 Bacteria 2941
86 Ga0316579_10045577 3300031691 Bacteria 2045
87 Ga0316576_10006228 3300031727 Bacteria 7402
88 Ga0316576_10016743 3300031727 Bacteria 4963
89 Ga0316576_10136764 3300031727 Bacteria 1844
90 Ga0316576_10306597 3300031727 Bacteria 1186
91 Ga0316578_10008230 3300031728 Bacteria 5292
92 Ga0307412_10058663 3300031911 Bacteria 2576
93 Ga0307416_100304242 3300032002 Bacteria 1587
94 Ga0307416_100425658 3300032002 Bacteria 1373
95 Ga0307415_100225004 3300032126 Bacteria 1507
96 Ga0316574_0020049 3300035398 Bacteria 3953
97 Ga0316574_0076462 3300035398 Bacteria 2121
98 Ga0316574_0077179 3300035398 Bacteria 2111
99 Ga0316574_0083489 3300035398 Bacteria 2031
100 Ga0316582_0151407 3300036647 Bacteria 1568
101 Ga0316584_0021950 3300036712 Bacteria 4649
102 Ga0316584_0153365 3300036712 Bacteria 1714
103 Ga0395898_0021572 3300037466 Bacteria 6529
104 Ga0395905_0015912 3300037471 Bacteria 7147
105 Ga0395901_0352383 3300038443 Bacteria 1519
106 Ga0436365_1243573 3300039437 Bacteria 3993
107 Ga0451835_0504013 3300041492 Bacteria 1500
108 Ga0451837_1280280 3300041494 Bacteria 3937
109 Ga0451851_0634748 3300041507 Bacteria 1348
110 Ga0451853_1411077 3300041512 Bacteria 1150
111 Ga0451853_3528083 3300041512 Bacteria 1770
112 Ga0439454_003044 3300042011 Bacteria 1833
113 Ga0466966_0040473 3300044684 Bacteria 3000
114 Ga0466970_0061235 3300044765 Bacteria 2016
115 Ga0466957_0079719 3300044842 Bacteria 2038
116 Ga0495625_0033544 3300046660 Bacteria 3795
117 Ga0495672_0009691 3300047320 Bacteria 6947
118 Ga0496102_0051505 3300048905 Bacteria 3750
119 Ga0496110_0002014 3300048913 Bacteria 15135
120 Ga0496110_0121347 3300048913 Bacteria 2355
121 Ga0496111_0014569 3300048914 Bacteria 5376
122 Ga0496112_0045827 3300048915 Bacteria 4286
123 Ga0496114_0008089 3300048917 Bacteria 8329
124 Ga0496124_0108606 3300048927 Bacteria 2237
125 Ga0501034_0000495 3300049571 Bacteria 63904
126 Ga0501034_0030404 3300049571 Bacteria 5490
127 Ga0501034_0107587 3300049571 Bacteria 2780
128 Ga0501034_0135621 3300049571 Bacteria 2442
129 Ga0501034_0281854 3300049571 Bacteria 1601
130 Ga0501036_0439783 3300049572 Bacteria 1087
131 Ga0501047_0035593 3300049581 Bacteria 4810
132 Ga0501071_0112806 3300049587 Bacteria 2010
133 Ga0501071_0303244 3300049587 Bacteria 1211
134 Ga0501081_0387013 3300049743 Bacteria 1034
135 Ga0501044_0024053 3300049823 Bacteria 6472
136 nmdc:mga00v17_154232_c1 3300050491 Bacteria 1476
137 nmdc:mga00v17_17058_c1 3300050491 Bacteria 4101
138 nmdc:mga00v17_63130_c1 3300050491 Bacteria 2281
139 nmdc:mga0yw44_11254_c1 3300050492 Bacteria 4609
140 nmdc:mga0yw44_201319_c1 3300050492 Bacteria 1315
141 nmdc:mga0yw44_94844_c1 3300050492 Bacteria 1892
142 nmdc:mga07m45_83235_c1 3300050496 Bacteria 1828
143 nmdc:mga08y16_116903_c1 3300050511 Bacteria 2776
144 nmdc:mga0sz30_60552_c1 3300050516 Bacteria 1616
145 Ga0530510_0002594 3300061734 Bacteria 12416
146 2935396133 2935390628 Bacteria 7043367
147 2995465608 2995463766 Bacteria 8577691
148 8054165912 8054160619 Bacteria 7783213
149 Ga0105240_10029236
150 rootH1_10083627
151 Ga0065707_10081729
152 Ga0065707_10181383
153 Ga0070677_10011597
154 Ga0070682_100015378
155 Ga0070691_10056729
156 Ga0070671_100020247
157 Ga0070714_100004789
158 Ga0070711_100005261
159 Ga0070705_100001843
160 Ga0070700_100168683
161 Ga0070678_100325164
162 Ga0070681_10001582
163 Ga0070681_10219995
164 Ga0068867_100226232
165 Ga0070696_100000873
166 Ga0070665_100219426
167 Ga0068859_100162355
168 Ga0068863_100217228
169 Ga0068860_100008012
170 Ga0075365_10003850
171 Ga0075365_10057772
172 Ga0075365_10098557
173 Ga0075365_10118130
174 Ga0075365_10253138
175 Ga0075368_10010079
176 Ga0075363_100007282
177 Ga0075363_100051468
178 Ga0075363_100079071
179 Ga0075364_10003963
180 Ga0075364_10007996
181 Ga0075370_10045046
182 Ga0075428_100220386
183 Ga0097620_100162349
184 Ga0105250_10000036
185 Ga0105240_10037124
186 Ga0105240_10059090
187 Ga0111539_10359698
188 Ga0105243_10017369
189 Ga0105248_10120355
190 Ga0099796_10012419
191 Ga0157371_10163147
192 Ga0157370_10142280
193 Ga0157369_10008182
194 Ga0157372_10123419
195 Ga0157375_10082826
196 Ga0163163_10048142
197 Ga0163163_10286226
198 Ga0157379_10008661
199 Ga0163161_10032441
200 Ga0213876_10014502
201 Ga0209675_1031692
202 Ga0207696_1000135
203 Ga0207682_10039384
204 Ga0207645_10107039
205 Ga0207707_10182269
206 Ga0207695_10087307
207 Ga0207695_10152233
208 Ga0207662_10232227
209 Ga0207664_10000046
210 Ga0207690_10305560
211 Ga0207686_10097676
212 Ga0207704_10114863
213 Ga0207691_10165867
214 Ga0207691_10332801
215 Ga0207689_10074226
216 Ga0207679_10184017
217 Ga0207667_10039875
218 Ga0207678_10166213
219 Ga0207708_10111640
220 Ga0207708_10179112
221 Ga0207675_100090839
222 Ga0207675_100264687
223 Ga0207683_10254090
224 Ga0207698_10190849
225 Ga0268266_10172795
226 Ga0268264_10088183
227 Ga0265326_10000006
228 Ga0265334_10000040
229 Ga0265336_10009370
230 Ga0265338_10000661
231 Ga0265324_10001592
232 Ga0265770_1000630
233 Ga0307509_10099944
234 Ga0316579_10045577
235 Ga0316576_10006228
236 Ga0316576_10016743
237 Ga0316576_10136764
238 Ga0316576_10306597
239 Ga0316578_10008230
240 Ga0307412_10058663
241 Ga0307416_100304242
242 Ga0307416_100425658
243 Ga0307415_100225004
244 Ga0316574_0020049
245 Ga0316574_0076462
246 Ga0316574_0077179
247 Ga0316574_0083489
248 Ga0316582_0151407
249 Ga0316584_0021950
250 Ga0316584_0153365
251 Ga0395898_0021572
252 Ga0395905_0015912
253 Ga0395901_0352383
254 Ga0436365_1243573
255 Ga0451835_0504013
256 Ga0451837_1280280
257 Ga0451851_0634748
258 Ga0451853_1411077
259 Ga0451853_3528083
260 Ga0439454_003044
261 Ga0466966_0040473
262 Ga0466970_0061235
263 Ga0466957_0079719
264 Ga0495625_0033544
265 Ga0495672_0009691
266 Ga0496102_0051505
267 Ga0496110_0002014
268 Ga0496110_0121347
269 Ga0496111_0014569
270 Ga0496112_0045827
271 Ga0496114_0008089
272 Ga0496124_0108606
273 Ga0501034_0000495
274 Ga0501034_0030404
275 Ga0501034_0107587
276 Ga0501034_0135621
277 Ga0501034_0281854
278 Ga0501036_0439783
279 Ga0501047_0035593
280 Ga0501071_0112806
281 Ga0501071_0303244
282 Ga0501081_0387013
283 Ga0501044_0024053
284 nmdc:mga00v17_154232_c1
285 nmdc:mga00v17_17058_c1
286 nmdc:mga00v17_63130_c1
287 nmdc:mga0yw44_11254_c1
288 nmdc:mga0yw44_201319_c1
289 nmdc:mga0yw44_94844_c1
290 nmdc:mga07m45_83235_c1
291 nmdc:mga08y16_116903_c1
292 nmdc:mga0sz30_60552_c1
293 Ga0530510_0002594
294 2935396133
295 2995465608
296 8054165912

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04371

PAD_porph

Porphyromonas-type peptidyl-arginine deiminase

35

383

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
2q3u-assembly2.cif.gz_B ensemble refinement of the protein crystal structure of gene product from arabidopsis thaliana at5g08170, agmatine iminohydrolase 0.9634 8 343
6nic-assembly1.cif.gz_B crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) in complex with 6-aminohexanamide 0.9619 14 343
6nic-assembly2.cif.gz_D crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) in complex with 6-aminohexanamide 0.9605 14 343
6nic-assembly2.cif.gz_C crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) in complex with 6-aminohexanamide 0.9572 14 343
3h7k-assembly1.cif.gz_A crystal structure of arabidopsis thaliana agmatine deiminase complexed with a covalently bound reaction intermediate 0.9524 2 345
ID Description Score Start End Superfamily
3h7kA00 Alpha Beta;5-stranded Propeller;L-arginine/glycine Amidinotransferase; Chain A;L-arginine/glycine Amidinotransferase; Chain A 0.9315 2 345 3.75.10.10
3h7kA00 Alpha Beta;5-stranded Propeller;L-arginine/glycine Amidinotransferase; Chain A;L-arginine/glycine Amidinotransferase; Chain A 0.9262 2 345 3.75.10.10
2ewoA00 Alpha Beta;5-stranded Propeller;L-arginine/glycine Amidinotransferase; Chain A;L-arginine/glycine Amidinotransferase; Chain A 0.8994 2 345 3.75.10.10
2ewoA00 Alpha Beta;5-stranded Propeller;L-arginine/glycine Amidinotransferase; Chain A;L-arginine/glycine Amidinotransferase; Chain A 0.8944 2 345 3.75.10.10
6b10B00 Alpha Beta;5-stranded Propeller;L-arginine/glycine Amidinotransferase; Chain A;L-arginine/glycine Amidinotransferase; Chain A 0.8412 13 345 3.75.10.10
ID Description Score Start End GO Terms
AF-A0A6D2KCS2-F1-model_v4 Agmatine deiminase 0.9986 8 101 GO:0004668
GO:0009446
GO:0047632
AF-G7ZU96-F1-model_v4 Agmatine deiminase 0.9956 16 98 GO:0004668
GO:0009446
GO:0047632
AF-A0A059N2K9-F1-model_v4 Agmatine deiminase 0.9919 6 119 GO:0004668
GO:0009446
GO:0047632
AF-A0A0H1RQG1-F1-model_v4 deleted 0.9876 1 205
AF-V5I7D1-F1-model_v4 Putative agmatine deiminase 0.9866 3 185 GO:0004668
GO:0009446
GO:0047632

Map