F202440

General Info

Members Datasets Scaffolds Average Seq Length
148 77 296 248

Family's Representative Sequence

Representative Sequence 3300005435|Ga0070714_100143025|Ga0070714_1001430253
Length 253
Sequence MSGHSKWHNIKLKKGKVDAQRGQLFTKLSKEIIVAAKSGSPDPEANFRLKMAVTKARESNMPMENIKRAIGRATGAEKGATLEEIRYEGYGPAGVAVIADVVTDNRHRTAGEMRFVFSRNGGNLGESGCVGWLFDERGLVVVPAEGLTEDEVLEVAVVEGVIDVRTEGDTVEILTDPKSLSAVRERVERELLTPRRKAVESAGVELVPKSRVDVSKDDAPVVLRLLDALEEHEDVTHVYSNAEIPDAVLEALA

Samples

Sample ID Description Type Environment
1 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
5 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
10 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
11 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
12 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
13 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
14 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
15 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
16 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
17 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
18 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
19 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
20 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
21 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
22 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
23 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
24 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
25 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
26 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
27 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
28 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
29 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
30 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
31 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
32 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
33 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300028017 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4 Metagenome Rhizosphere
45 3300028023 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 Metagenome Rhizosphere
46 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
47 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
48 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
49 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
50 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
51 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
52 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
53 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
54 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
55 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
56 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
57 3300034820 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 Metagenome Rhizosphere
58 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
59 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
60 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
61 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
62 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
63 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
64 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
65 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
66 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
67 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
68 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
69 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
70 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
71 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
72 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
73 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
74 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
75 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
76 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
77 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.95
Metatranscriptomes 4.05
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 83.78
Stem 0
Stem Tuber 0
Unclassified 8.78

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070714_100143025 3300005435 Unclassified 2149
2 Ga0070658_10000790 3300005327 Bacteria 27140
3 Ga0070683_100308409 3300005329 Bacteria 1506
4 Ga0070660_100236845 3300005339 Bacteria 1486
5 Ga0070691_10007828 3300005341 Bacteria 4888
6 Ga0070661_100084230 3300005344 Bacteria 2349
7 Ga0070714_100026967 3300005435 Bacteria 4753
8 Ga0070714_100038235 3300005435 Bacteria 4035
9 Ga0070714_100239411 3300005435 Bacteria 1674
10 Ga0070714_100447812 3300005435 Unclassified 1226
11 Ga0070713_100305681 3300005436 Bacteria 1465
12 Ga0070711_100138327 3300005439 Bacteria 1823
13 Ga0070707_100092146 3300005468 Bacteria 2934
14 Ga0070679_100112360 3300005530 Bacteria 2710
15 Ga0068853_100181634 3300005539 Bacteria 1908
16 Ga0068853_100211400 3300005539 Bacteria 1768
17 Ga0068853_100303516 3300005539 Bacteria 1476
18 Ga0068855_100000056 3300005563 Bacteria 135739
19 Ga0068855_100003320 3300005563 Bacteria 19679
20 Ga0068854_100000006 3300005578 Bacteria 186299
21 Ga0068856_100001064 3300005614 Bacteria 29056
22 Ga0068851_10054260 3300005834 Unclassified 2041
23 Ga0070717_10445926 3300006028 Bacteria 1166
24 Ga0105243_10147546 3300009148 Unclassified 2014
25 Ga0105241_10262302 3300009174 Bacteria 1469
26 Ga0105237_10000089 3300009545 Bacteria 123429
27 Ga0105238_10137916 3300009551 Bacteria 2417
28 Ga0157373_10325314 3300013100 Unclassified 1094
29 Ga0157369_10173735 3300013105 Bacteria 2269
30 Ga0157369_10710261 3300013105 Bacteria 1035
31 Ga0157374_10074857 3300013296 Bacteria 3199
32 Ga0197907_10377528 3300020069 Bacteria 981
33 Ga0206350_10137361 3300020080 Bacteria 1182
34 Ga0213873_10005145 3300021358 Bacteria 2491
35 Ga0213873_10016641 3300021358 Bacteria 1665
36 Ga0213872_10006586 3300021361 Bacteria 5800
37 Ga0213872_10017609 3300021361 Bacteria 3300
38 Ga0213872_10041809 3300021361 Unclassified 2091
39 Ga0213874_10016404 3300021377 Bacteria 1971
40 Ga0213876_10028161 3300021384 Bacteria 2962
41 Ga0213875_10000001 3300021388 Bacteria 2793540
42 Ga0213875_10001155 3300021388 Bacteria 18114
43 Ga0213875_10008434 3300021388 Bacteria 5281
44 Ga0213875_10017842 3300021388 Bacteria 3425
45 Ga0213871_10055864 3300021441 Bacteria 1091
46 Ga0213871_10063685 3300021441 Bacteria 1031
47 Ga0224712_10157317 3300022467 Bacteria 1011
48 Ga0207671_10000160 3300025914 Bacteria 104908
49 Ga0207657_10017832 3300025919 Bacteria 6795
50 Ga0207657_10411757 3300025919 Bacteria 1063
51 Ga0207649_10133980 3300025920 Bacteria 1687
52 Ga0207646_10146504 3300025922 Bacteria 2128
53 Ga0207700_10795742 3300025928 Unclassified 846
54 Ga0207664_10001082 3300025929 Bacteria 18173
55 Ga0207664_10036336 3300025929 Bacteria 3807
56 Ga0207664_10055561 3300025929 Bacteria 3142
57 Ga0207664_10229057 3300025929 Bacteria 1615
58 Ga0207664_10444023 3300025929 Bacteria 1157
59 Ga0207667_10000083 3300025949 Bacteria 154785
60 Ga0207667_10000516 3300025949 Bacteria 50888
61 Ga0207640_10000005 3300025981 Bacteria 408618
62 Ga0207639_10195224 3300026041 Bacteria 1732
63 Ga0207639_10308586 3300026041 Bacteria 1401
64 Ga0207678_10410604 3300026067 Bacteria 1173
65 Ga0207702_10013471 3300026078 Bacteria 6794
66 Ga0265356_1000011 3300028017 Bacteria 31463
67 Ga0265357_1002459 3300028023 Bacteria 1518
68 Ga0265338_10000089 3300028800 Bacteria 172762
69 Ga0265762_1003872 3300030760 Bacteria 2682
70 Ga0265770_1016872 3300030878 Unclassified 1123
71 Ga0265760_10001066 3300031090 Bacteria 7958
72 Ga0265325_10001318 3300031241 Bacteria 17573
73 Ga0265325_10025731 3300031241 Bacteria 3193
74 Ga0265340_10123318 3300031247 Unclassified 1191
75 Ga0265327_10024415 3300031251 Bacteria 3553
76 Ga0265316_10024775 3300031344 Bacteria 5017
77 Ga0265316_10177448 3300031344 Unclassified 1587
78 Ga0265313_10000043 3300031595 Bacteria 117620
79 Ga0265342_10005400 3300031712 Bacteria 9755
80 Ga0265342_10005425 3300031712 Bacteria 9727
81 Ga0307416_100922753 3300032002 Bacteria 974
82 Ga0373959_0060517 3300034820 Bacteria 837
83 Ga0373937_0479006 3300036401 Unclassified 1182
84 Ga0395899_0001529 3300037312 Bacteria 19551
85 Ga0395899_0020821 3300037312 Bacteria 4974
86 Ga0395900_0001425 3300037418 Bacteria 28530
87 Ga0395898_0041403 3300037466 Bacteria 4550
88 Ga0395905_0160884 3300037471 Bacteria 2110
89 Ga0436364_0032157 3300037853 Bacteria 1349
90 Ga0436364_0267414 3300037853 Bacteria 1776
91 Ga0436364_0273345 3300037853 Bacteria 2794207
92 Ga0436364_0310824 3300037853 Bacteria 1714
93 Ga0436364_0312727 3300037853 Bacteria 1083
94 Ga0436364_0455281 3300037853 Bacteria 20597
95 Ga0436364_0829766 3300037853 Bacteria 3416
96 Ga0436364_0906301 3300037853 Bacteria 6247
97 Ga0436364_1049875 3300037853 Bacteria 3502
98 Ga0436364_1264896 3300037853 Bacteria 19842
99 Ga0395901_0034279 3300038443 Bacteria 5242
100 Ga0436365_0418862 3300039437 Bacteria 14588
101 Ga0436365_1026841 3300039437 Bacteria 1377
102 Ga0436365_1240511 3300039437 Bacteria 1585
103 Ga0436360_0085068 3300039438 Unclassified 1072
104 Ga0436360_0097986 3300039438 Bacteria 8757
105 Ga0436360_0109378 3300039438 Bacteria 5327
106 Ga0436360_0170592 3300039438 Bacteria 1155
107 Ga0436360_0297322 3300039438 Bacteria 1328
108 Ga0436360_0630802 3300039438 Bacteria 3550
109 Ga0436360_0786358 3300039438 Bacteria 2007
110 Ga0436360_0893255 3300039438 Bacteria 6572
111 Ga0436360_0963837 3300039438 Bacteria 931
112 Ga0436360_1173331 3300039438 Bacteria 6462
113 Ga0436360_1173454 3300039438 Bacteria 3914
114 Ga0436360_1282267 3300039438 Bacteria 1351
115 Ga0436361_0022640 3300039447 Bacteria 18180
116 Ga0436361_0025491 3300039447 Bacteria 5220
117 Ga0436361_0026786 3300039447 Unclassified 2113
118 Ga0436361_0606335 3300039447 Bacteria 1238
119 Ga0436361_0998965 3300039447 Bacteria 1910
120 Ga0436361_1051531 3300039447 Bacteria 12543
121 Ga0436361_1073708 3300039447 Bacteria 851
122 Ga0436361_1080106 3300039447 Bacteria 1602
123 Ga0436363_0117676 3300039450 Bacteria 12182
124 Ga0436363_0747682 3300039450 Bacteria 1284
125 Ga0436363_0777342 3300039450 Bacteria 2766
126 Ga0436363_1273396 3300039450 Bacteria 1919
127 Ga0436363_1286436 3300039450 Bacteria 1408
128 Ga0436362_0120877 3300039453 Bacteria 1870
129 Ga0436362_0154693 3300039453 Bacteria 835
130 Ga0436362_0259610 3300039453 Bacteria 849
131 Ga0436362_0287532 3300039453 Bacteria 3059
132 Ga0436362_0374161 3300039453 Bacteria 11821
133 Ga0436362_0398943 3300039453 Bacteria 4083
134 Ga0436362_0558155 3300039453 Bacteria 1176
135 Ga0436362_0835155 3300039453 Bacteria 1537
136 Ga0436362_0861001 3300039453 Bacteria 966
137 Ga0436362_0879053 3300039453 Bacteria 4525
138 Ga0466966_0003751 3300044684 Bacteria 10017
139 Ga0466963_0022265 3300044694 Bacteria 4011
140 Ga0466963_0449940 3300044694 Bacteria 909
141 Ga0453684_0016591 3300044712 Bacteria 11496
142 Ga0466957_0016337 3300044842 Bacteria 4341
143 Ga0466958_0006374 3300045836 Bacteria 6417
144 Ga0466958_0055262 3300045836 Bacteria 2409
145 Ga0466967_0028143 3300045976 Bacteria 4687
146 Ga0466967_0360329 3300045976 Bacteria 1409
147 Ga0501257_001840 3300049686 Bacteria 4416
148 Ga0495601_0175182 3300053077 Bacteria 1402
149 Ga0070714_100143025
150 Ga0070658_10000790
151 Ga0070683_100308409
152 Ga0070660_100236845
153 Ga0070691_10007828
154 Ga0070661_100084230
155 Ga0070714_100026967
156 Ga0070714_100038235
157 Ga0070714_100239411
158 Ga0070714_100447812
159 Ga0070713_100305681
160 Ga0070711_100138327
161 Ga0070707_100092146
162 Ga0070679_100112360
163 Ga0068853_100181634
164 Ga0068853_100211400
165 Ga0068853_100303516
166 Ga0068855_100000056
167 Ga0068855_100003320
168 Ga0068854_100000006
169 Ga0068856_100001064
170 Ga0068851_10054260
171 Ga0070717_10445926
172 Ga0105243_10147546
173 Ga0105241_10262302
174 Ga0105237_10000089
175 Ga0105238_10137916
176 Ga0157373_10325314
177 Ga0157369_10173735
178 Ga0157369_10710261
179 Ga0157374_10074857
180 Ga0197907_10377528
181 Ga0206350_10137361
182 Ga0213873_10005145
183 Ga0213873_10016641
184 Ga0213872_10006586
185 Ga0213872_10017609
186 Ga0213872_10041809
187 Ga0213874_10016404
188 Ga0213876_10028161
189 Ga0213875_10000001
190 Ga0213875_10001155
191 Ga0213875_10008434
192 Ga0213875_10017842
193 Ga0213871_10055864
194 Ga0213871_10063685
195 Ga0224712_10157317
196 Ga0207671_10000160
197 Ga0207657_10017832
198 Ga0207657_10411757
199 Ga0207649_10133980
200 Ga0207646_10146504
201 Ga0207700_10795742
202 Ga0207664_10001082
203 Ga0207664_10036336
204 Ga0207664_10055561
205 Ga0207664_10229057
206 Ga0207664_10444023
207 Ga0207667_10000083
208 Ga0207667_10000516
209 Ga0207640_10000005
210 Ga0207639_10195224
211 Ga0207639_10308586
212 Ga0207678_10410604
213 Ga0207702_10013471
214 Ga0265356_1000011
215 Ga0265357_1002459
216 Ga0265338_10000089
217 Ga0265762_1003872
218 Ga0265770_1016872
219 Ga0265760_10001066
220 Ga0265325_10001318
221 Ga0265325_10025731
222 Ga0265340_10123318
223 Ga0265327_10024415
224 Ga0265316_10024775
225 Ga0265316_10177448
226 Ga0265313_10000043
227 Ga0265342_10005400
228 Ga0265342_10005425
229 Ga0307416_100922753
230 Ga0373959_0060517
231 Ga0373937_0479006
232 Ga0395899_0001529
233 Ga0395899_0020821
234 Ga0395900_0001425
235 Ga0395898_0041403
236 Ga0395905_0160884
237 Ga0436364_0032157
238 Ga0436364_0267414
239 Ga0436364_0273345
240 Ga0436364_0310824
241 Ga0436364_0312727
242 Ga0436364_0455281
243 Ga0436364_0829766
244 Ga0436364_0906301
245 Ga0436364_1049875
246 Ga0436364_1264896
247 Ga0395901_0034279
248 Ga0436365_0418862
249 Ga0436365_1026841
250 Ga0436365_1240511
251 Ga0436360_0085068
252 Ga0436360_0097986
253 Ga0436360_0109378
254 Ga0436360_0170592
255 Ga0436360_0297322
256 Ga0436360_0630802
257 Ga0436360_0786358
258 Ga0436360_0893255
259 Ga0436360_0963837
260 Ga0436360_1173331
261 Ga0436360_1173454
262 Ga0436360_1282267
263 Ga0436361_0022640
264 Ga0436361_0025491
265 Ga0436361_0026786
266 Ga0436361_0606335
267 Ga0436361_0998965
268 Ga0436361_1051531
269 Ga0436361_1073708
270 Ga0436361_1080106
271 Ga0436363_0117676
272 Ga0436363_0747682
273 Ga0436363_0777342
274 Ga0436363_1273396
275 Ga0436363_1286436
276 Ga0436362_0120877
277 Ga0436362_0154693
278 Ga0436362_0259610
279 Ga0436362_0287532
280 Ga0436362_0374161
281 Ga0436362_0398943
282 Ga0436362_0558155
283 Ga0436362_0835155
284 Ga0436362_0861001
285 Ga0436362_0879053
286 Ga0466966_0003751
287 Ga0466963_0022265
288 Ga0466963_0449940
289 Ga0453684_0016591
290 Ga0466957_0016337
291 Ga0466958_0006374
292 Ga0466958_0055262
293 Ga0466967_0028143
294 Ga0466967_0360329
295 Ga0501257_001840
296 Ga0495601_0175182

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF20772

TACO1_YebC_N

TACO1/YebC protein N-terminal domain

5

76

0.98

PF01709

Transcrip_reg

TACO1/YebC second and third domain

82

242

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
1lfp-assembly1.cif.gz_A crystal structure of a conserved hypothetical protein aq1575 from aquifex aeolicus 0.8963 18 242
1kon-assembly1.cif.gz_A crystal structure of e.coli yebc 0.8864 4 244
1kon-assembly1.cif.gz_A crystal structure of e.coli yebc 0.8658 4 244
1mw7-assembly1.cif.gz_A x-ray structure of y162_helpy northeast structural genomics consortium target pr6 0.8435 24 239
1lfp-assembly1.cif.gz_A crystal structure of a conserved hypothetical protein aq1575 from aquifex aeolicus 0.8309 18 242
ID Description Score Start End Superfamily
1lfpA02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;YebC, transcriptional regulation domain 0.9666 83 242 3.30.70.980
1lfpA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Integrase, N-terminal zinc-binding domain 0.9273 18 81 1.10.10.200
4f3qA03 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;YebC, transcriptional regulation domain 0.9221 130 206 3.30.70.980
1lfpA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Integrase, N-terminal zinc-binding domain 0.9133 18 81 1.10.10.200
4f3qA03 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;YebC, transcriptional regulation domain 0.9106 130 206 3.30.70.980
ID Description Score Start End GO Terms
AF-A0A1I7Y1Y2-F1-model_v4 YebC/PmpR family DNA-binding transcriptional regulator 0.9754 103 208 GO:0005829
AF-A0A382CZZ0-F1-model_v4 TACO1/YebC-like second and third domain-containing protein 0.9736 81 249 GO:0005829
AF-A0A3M1HJ34-F1-model_v4 YebC/PmpR family DNA-binding transcriptional regulator 0.9715 108 250 GO:0003677
GO:0005829
AF-A0A7W0J1L6-F1-model_v4 YebC/PmpR family DNA-binding transcriptional regulator 0.9681 118 250 GO:0003677
GO:0005829
AF-A0A7V3FN36-F1-model_v4 YebC/PmpR family DNA-binding transcriptional regulator 0.9664 110 250 GO:0003677
GO:0005829

Map