F201681

General Info

Members Datasets Scaffolds Average Seq Length
147 94 147 253

Family's Representative Sequence

Representative Sequence 3300053077|Ga0495601_0177129|Ga0495601_0177129_365_1204
Length 279
Sequence MASKSSEGRAGWSGRALRQAALAATILLSGLAVAAAAEAQPPSGVTHAPGGSRQKQLQLGEGLFAANCASCHGFRGEGVLTPSESGVGDVSGEGPSLVGVGELAPDFYLRTGRMPLDHAGEEPERQRPLFNSHEIEAISAYVASFGGGPKVPEPEPDFGALSEGMSLFTEHCAGCHQIVGEGGYVTGAKVPVLGHATPTEIAEAVRIGPFLMPKFPPSQISDRDLDKIIAYVQRSKDPEDPGGWGIGHIGPVPEGIVAWFVAIFVLGGICAVIGRRLST

Samples

Sample ID Description Type Environment
1 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
4 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
8 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
14 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
15 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
19 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
20 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
21 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
22 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
23 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
24 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
27 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
28 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
29 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
30 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
31 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
32 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
33 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
34 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
54 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
55 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
56 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
57 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
58 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
59 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
60 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
61 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
62 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
63 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
64 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
65 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
66 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
67 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
68 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
69 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
70 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
71 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
72 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
73 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
74 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
75 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
76 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
77 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
78 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
79 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
80 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
81 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
82 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
83 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
84 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
85 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
86 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
87 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
88 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
89 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
90 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
91 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
92 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
93 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
94 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.64
Metatranscriptomes 1.36
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 9.52
Rhizosphere 89.8
Stem 0
Stem Tuber 0
Unclassified 0.68

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10176103 3300005327 Bacteria 1799
2 Ga0070683_100002079 3300005329 Bacteria 15807
3 Ga0070683_100005656 3300005329 Bacteria 10440
4 Ga0070683_100016472 3300005329 Bacteria 6519
5 Ga0070683_100041435 3300005329 Bacteria 4236
6 Ga0070683_100185279 3300005329 Bacteria 1976
7 Ga0070677_10000016 3300005333 Bacteria 52044
8 Ga0070666_10500296 3300005335 Unclassified 881
9 Ga0070680_100003139 3300005336 Bacteria 12276
10 Ga0070660_100020947 3300005339 Bacteria 4813
11 Ga0070691_10147493 3300005341 Bacteria 1204
12 Ga0070661_100044524 3300005344 Bacteria 3242
13 Ga0070714_100058940 3300005435 Bacteria 3291
14 Ga0070714_100434025 3300005435 Bacteria 1246
15 Ga0070713_100000005 3300005436 Bacteria 201526
16 Ga0070710_10134530 3300005437 Bacteria 1510
17 Ga0070681_10046426 3300005458 Bacteria 4343
18 Ga0070681_10062165 3300005458 Bacteria 3708
19 Ga0070681_10531508 3300005458 Bacteria 1089
20 Ga0070679_100000202 3300005530 Bacteria 48732
21 Ga0070679_100338068 3300005530 Bacteria 1454
22 Ga0070684_100017082 3300005535 Bacteria 5948
23 Ga0070684_100078437 3300005535 Bacteria 2918
24 Ga0070684_100094871 3300005535 Bacteria 2658
25 Ga0068853_100000104 3300005539 Bacteria 56511
26 Ga0068853_100163725 3300005539 Bacteria 2008
27 Ga0070665_100000352 3300005548 Bacteria 69185
28 Ga0068856_100000366 3300005614 Bacteria 49541
29 Ga0068856_100004980 3300005614 Bacteria 13150
30 Ga0068856_100086350 3300005614 Bacteria 3117
31 Ga0081538_10005314 3300005981 Bacteria 11598
32 Ga0070717_10042221 3300006028 Bacteria 3720
33 Ga0070717_10485440 3300006028 Bacteria 1116
34 Ga0070716_100064052 3300006173 Bacteria 2136
35 Ga0070712_100096665 3300006175 Bacteria 2175
36 Ga0070712_100193998 3300006175 Bacteria 1591
37 Ga0070712_100395650 3300006175 Bacteria 1140
38 Ga0075434_100004711 3300006871 Bacteria 12329
39 Ga0075436_100107977 3300006914 Bacteria 1941
40 Ga0075435_100045021 3300007076 Bacteria 3536
41 Ga0105240_10097748 3300009093 Bacteria 3577
42 Ga0105238_10012730 3300009551 Bacteria 8492
43 Ga0105249_10000039 3300009553 Bacteria 196325
44 Ga0105249_10267633 3300009553 Bacteria 1701
45 Ga0157371_10016408 3300013102 Bacteria 5528
46 Ga0157370_10036182 3300013104 Bacteria 4792
47 Ga0157370_10046784 3300013104 Bacteria 4148
48 Ga0157369_10000014 3300013105 Bacteria 266411
49 Ga0157369_10184568 3300013105 Unclassified 2194
50 Ga0157369_10266206 3300013105 Bacteria 1787
51 Ga0157372_10059407 3300013307 Bacteria 4276
52 Ga0157372_10394133 3300013307 Unclassified 1614
53 Ga0157379_10001693 3300014968 Bacteria 18236
54 Ga0206353_11160348 3300020082 Unclassified 1853
55 Ga0206353_11209900 3300020082 Bacteria 1988
56 Ga0207682_10000007 3300025893 Bacteria 88967
57 Ga0207647_10067527 3300025904 Bacteria 2166
58 Ga0207707_10036584 3300025912 Bacteria 4291
59 Ga0207707_10216132 3300025912 Bacteria 1669
60 Ga0207693_10045036 3300025915 Bacteria 3467
61 Ga0207693_10191029 3300025915 Bacteria 1611
62 Ga0207660_10036348 3300025917 Bacteria 3423
63 Ga0207657_10039271 3300025919 Bacteria 4208
64 Ga0207652_10000283 3300025921 Bacteria 52945
65 Ga0207652_10003257 3300025921 Bacteria 13459
66 Ga0207652_10025539 3300025921 Bacteria 4913
67 Ga0207694_10197164 3300025924 Bacteria 1637
68 Ga0207700_10000003 3300025928 Bacteria 500797
69 Ga0207664_10390489 3300025929 Unclassified 1236
70 Ga0207661_10001056 3300025944 Bacteria 18313
71 Ga0207661_10010654 3300025944 Bacteria 6625
72 Ga0207661_10028075 3300025944 Bacteria 4307
73 Ga0207661_10208212 3300025944 Bacteria 1722
74 Ga0207661_10245012 3300025944 Unclassified 1591
75 Ga0207667_10279774 3300025949 Bacteria 1705
76 Ga0207712_10000003 3300025961 Bacteria 615314
77 Ga0207639_10000471 3300026041 Bacteria 27796
78 Ga0207678_10000710 3300026067 Bacteria 30416
79 Ga0207678_10270555 3300026067 Bacteria 1457
80 Ga0207702_10000085 3300026078 Bacteria 106728
81 Ga0207702_10006217 3300026078 Bacteria 10324
82 Ga0207702_10354103 3300026078 Bacteria 1405
83 Ga0207674_10093540 3300026116 Bacteria 2994
84 Ga0207698_10008855 3300026142 Bacteria 6380
85 Ga0268266_10000168 3300028379 Bacteria 119675
86 Ga0307405_10044726 3300031731 Bacteria 2709
87 Ga0307413_10004022 3300031824 Bacteria 6321
88 Ga0307406_10015000 3300031901 Bacteria 4473
89 Ga0307406_10354469 3300031901 Bacteria 1148
90 Ga0307409_100007849 3300031995 Bacteria 6423
91 Ga0307409_100121884 3300031995 Bacteria 2210
92 Ga0307409_100234489 3300031995 Bacteria 1666
93 Ga0307416_100463765 3300032002 Unclassified 1323
94 Ga0307415_100019186 3300032126 Bacteria 4146
95 Ga0373927_0029704 3300035695 Bacteria 3565
96 Ga0373947_0028306 3300035725 Bacteria 3284
97 Ga0373925_0013292 3300037068 Bacteria 5959
98 Ga0395899_0007379 3300037312 Bacteria 8498
99 Ga0395900_0029058 3300037418 Bacteria 5670
100 Ga0395900_0344254 3300037418 Unclassified 1466
101 Ga0395898_0026946 3300037466 Bacteria 5775
102 Ga0395898_0525079 3300037466 Unclassified 1125
103 Ga0395905_0017812 3300037471 Bacteria 6748
104 Ga0395901_0041788 3300038443 Bacteria 4752
105 Ga0395901_0452003 3300038443 Unclassified 1314
106 Ga0466963_0000007 3300044694 Bacteria 79067
107 Ga0466963_0003256 3300044694 Bacteria 9256
108 Ga0466963_0012425 3300044694 Bacteria 5212
109 Ga0466964_0154462 3300044706 Bacteria 1067
110 Ga0466971_0130774 3300044719 Bacteria 1165
111 Ga0466957_0002551 3300044842 Bacteria 9799
112 Ga0466957_0008282 3300044842 Bacteria 5911
113 Ga0466960_0005517 3300044901 Bacteria 5014
114 Ga0466960_0027186 3300044901 Bacteria 2607
115 Ga0466958_0028486 3300045836 Bacteria 3312
116 Ga0466967_0000040 3300045976 Bacteria 46660
117 Ga0466967_0003182 3300045976 Bacteria 10587
118 Ga0466967_0006508 3300045976 Bacteria 8278
119 Ga0466967_0233336 3300045976 Bacteria 1753
120 Ga0466967_0276407 3300045976 Bacteria 1611
121 Ga0495608_0403954 3300046511 Bacteria 835
122 Ga0495630_0000062 3300046517 Bacteria 86140
123 Ga0495658_0001789 3300046683 Bacteria 11078
124 Ga0496101_0096378 3300048904 Bacteria 2208
125 Ga0496104_0011658 3300048907 Bacteria 7881
126 Ga0496105_0006973 3300048908 Bacteria 8707
127 Ga0496105_0606345 3300048908 Bacteria 849
128 Ga0496108_0000055 3300048911 Bacteria 125202
129 Ga0496109_0000043 3300048912 Bacteria 134649
130 Ga0496109_0070855 3300048912 Bacteria 3200
131 Ga0496110_0005505 3300048913 Bacteria 9937
132 Ga0496110_0745623 3300048913 Bacteria 882
133 Ga0496111_0008346 3300048914 Bacteria 6847
134 Ga0496112_0000006 3300048915 Bacteria 365227
135 Ga0496112_0138382 3300048915 Bacteria 2405
136 Ga0496112_0953219 3300048915 Bacteria 779
137 Ga0496114_0166340 3300048917 Bacteria 1920
138 Ga0496119_0206591 3300048922 Bacteria 1013
139 Ga0501067_0047085 3300049583 Bacteria 2393
140 nmdc:mga0n895_17680_c1 3300050512 Bacteria 6579
141 nmdc:mga0rr50_20214_c1 3300050513 Bacteria 4514
142 nmdc:mga08x19_51666_c1 3300050514 Bacteria 2641
143 Ga0495601_0041828 3300053077 Bacteria 2874
144 Ga0495601_0177129 3300053077 Bacteria 1394
145 Ga0495655_0051129 3300053083 Bacteria 1094
146 Ga0495595_0128751 3300053084 Bacteria 1236
147 Ga0466962_0064704 3300061719 Bacteria 1746

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046511 Ga0495608_0403954 Ga0495608_0403954_49_783 206
2 3300053077 Ga0495601_0041828 Ga0495601_0041828_659_1411 216
3 3300005437 Ga0070710_10134530 Ga0070710_101345302 219
4 3300046683 Ga0495658_0001789 Ga0495658_0001789_9625_10368 219
5 3300045976 Ga0466967_0000040 Ga0466967_0000040_28170_28907 221
6 3300005335 Ga0070666_10500296 Ga0070666_105002961 223
7 3300005548 Ga0070665_100000352 Ga0070665_1000003527 223
8 3300028379 Ga0268266_10000168 Ga0268266_1000016868 223
9 3300031901 Ga0307406_10354469 Ga0307406_103544691 225
10 3300031995 Ga0307409_100234489 Ga0307409_1002344892 225
11 3300045976 Ga0466967_0233336 Ga0466967_0233336_718_1458 226
12 3300006871 Ga0075434_100004711 Ga0075434_1000047115 229
13 3300006914 Ga0075436_100107977 Ga0075436_1001079772 229
14 3300050512 nmdc:mga0n895_17680_c1 nmdc:mga0n895_17680_c1_2030_2785 229
15 3300050513 nmdc:mga0rr50_20214_c1 nmdc:mga0rr50_20214_c1_3669_4424 229
16 3300050514 nmdc:mga08x19_51666_c1 nmdc:mga08x19_51666_c1_1131_1886 229
17 3300005435 Ga0070714_100058940 Ga0070714_1000589403 231
18 3300006173 Ga0070716_100064052 Ga0070716_1000640523 231
19 3300007076 Ga0075435_100045021 Ga0075435_1000450214 231
20 3300031731 Ga0307405_10044726 Ga0307405_100447264 232
21 3300031824 Ga0307413_10004022 Ga0307413_100040228 232
22 3300031901 Ga0307406_10015000 Ga0307406_100150004 232
23 3300031995 Ga0307409_100007849 Ga0307409_1000078496 232
24 3300032002 Ga0307416_100463765 Ga0307416_1004637652 232
25 3300032126 Ga0307415_100019186 Ga0307415_1000191865 232
26 3300048915 Ga0496112_0953219 Ga0496112_0953219_24_725 233
27 3300013104 Ga0157370_10036182 Ga0157370_100361823 234
28 3300035695 Ga0373927_0029704 Ga0373927_0029704_196_903 234
29 3300035725 Ga0373947_0028306 Ga0373947_0028306_241_948 234
30 3300037068 Ga0373925_0013292 Ga0373925_0013292_3068_3775 234
31 3300025904 Ga0207647_10067527 Ga0207647_100675272 235
32 3300048915 Ga0496112_0138382 Ga0496112_0138382_1383_2090 235
33 3300009553 Ga0105249_10000039 Ga0105249_10000039156 236
34 3300025961 Ga0207712_10000003 Ga0207712_1000000347 236
35 3300006175 Ga0070712_100096665 Ga0070712_1000966652 237
36 3300025915 Ga0207693_10045036 Ga0207693_100450362 237
37 3300048904 Ga0496101_0096378 Ga0496101_0096378_206_958 237
38 3300048907 Ga0496104_0011658 Ga0496104_0011658_2173_2925 237
39 3300048908 Ga0496105_0006973 Ga0496105_0006973_4791_5543 237
40 3300048917 Ga0496114_0166340 Ga0496114_0166340_643_1395 237
41 3300053084 Ga0495595_0128751 Ga0495595_0128751_99_851 237
42 3300044842 Ga0466957_0002551 Ga0466957_0002551_3593_4399 238
43 3300048908 Ga0496105_0606345 Ga0496105_0606345_12_737 238
44 3300005614 Ga0068856_100000366 Ga0068856_10000036621 240
45 3300026078 Ga0207702_10000085 Ga0207702_1000008586 240
46 3300044901 Ga0466960_0027186 Ga0466960_0027186_1388_2182 240
47 3300044694 Ga0466963_0012425 Ga0466963_0012425_1196_1963 241
48 3300045976 Ga0466967_0006508 Ga0466967_0006508_3919_4686 241
49 3300005539 Ga0068853_100000104 Ga0068853_10000010455 243
50 3300026041 Ga0207639_10000471 Ga0207639_1000047122 243
51 3300044901 Ga0466960_0005517 Ga0466960_0005517_3097_3849 243
52 3300006028 Ga0070717_10485440 Ga0070717_104854402 244
53 3300006175 Ga0070712_100395650 Ga0070712_1003956502 244
54 3300013102 Ga0157371_10016408 Ga0157371_100164082 244
55 3300014968 Ga0157379_10001693 Ga0157379_1000169322 244
56 3300031995 Ga0307409_100121884 Ga0307409_1001218844 244
57 3300048911 Ga0496108_0000055 Ga0496108_0000055_58397_59179 244
58 3300048912 Ga0496109_0000043 Ga0496109_0000043_63772_64554 244
59 3300048922 Ga0496119_0206591 Ga0496119_0206591_56_823 244
60 3300005435 Ga0070714_100434025 Ga0070714_1004340252 247
61 3300005981 Ga0081538_10005314 Ga0081538_100053144 247
62 3300006028 Ga0070717_10042221 Ga0070717_100422213 247
63 3300044694 Ga0466963_0003256 Ga0466963_0003256_7871_8638 248
64 3300044719 Ga0466971_0130774 Ga0466971_0130774_348_1115 248
65 3300044842 Ga0466957_0008282 Ga0466957_0008282_3981_4748 248
66 3300045836 Ga0466958_0028486 Ga0466958_0028486_2468_3289 248
67 3300045976 Ga0466967_0003182 Ga0466967_0003182_5060_5881 248
68 3300061719 Ga0466962_0064704 Ga0466962_0064704_186_953 248
69 3300005614 Ga0068856_100004980 Ga0068856_1000049805 249
70 3300013105 Ga0157369_10000014 Ga0157369_10000014236 249
71 3300025929 Ga0207664_10390489 Ga0207664_103904892 249
72 3300026078 Ga0207702_10006217 Ga0207702_100062174 249
73 3300005329 Ga0070683_100002079 Ga0070683_1000020792 250
74 3300005333 Ga0070677_10000016 Ga0070677_100000166 250
75 3300009553 Ga0105249_10267633 Ga0105249_102676332 250
76 3300025893 Ga0207682_10000007 Ga0207682_1000000785 250
77 3300025944 Ga0207661_10001056 Ga0207661_100010563 250
78 3300046517 Ga0495630_0000062 Ga0495630_0000062_41874_42686 250
79 3300048915 Ga0496112_0000006 Ga0496112_0000006_188275_189066 250
80 3300049583 Ga0501067_0047085 Ga0501067_0047085_1153_1917 250
81 3300005458 Ga0070681_10046426 Ga0070681_100464263 253
82 3300005530 Ga0070679_100000202 Ga0070679_10000020211 253
83 3300025912 Ga0207707_10216132 Ga0207707_102161322 253
84 3300025921 Ga0207652_10003257 Ga0207652_100032579 253
85 3300044694 Ga0466963_0000007 Ga0466963_0000007_35656_36459 253
86 3300005530 Ga0070679_100338068 Ga0070679_1003380683 256
87 3300048912 Ga0496109_0070855 Ga0496109_0070855_1062_1859 256
88 3300037312 Ga0395899_0007379 Ga0395899_0007379_4473_5252 259
89 3300037418 Ga0395900_0029058 Ga0395900_0029058_848_1627 259
90 3300037466 Ga0395898_0026946 Ga0395898_0026946_3960_4739 259
91 3300037471 Ga0395905_0017812 Ga0395905_0017812_2905_3684 259
92 3300038443 Ga0395901_0041788 Ga0395901_0041788_3126_3905 259
93 3300053083 Ga0495655_0051129 Ga0495655_0051129_17_796 259
94 3300005329 Ga0070683_100041435 Ga0070683_1000414354 262
95 3300005535 Ga0070684_100017082 Ga0070684_1000170823 262
96 3300025944 Ga0207661_10208212 Ga0207661_102082122 262
97 3300005329 Ga0070683_100185279 Ga0070683_1001852793 263
98 3300005436 Ga0070713_100000005 Ga0070713_100000005180 263
99 3300005535 Ga0070684_100094871 Ga0070684_1000948713 263
100 3300006175 Ga0070712_100193998 Ga0070712_1001939982 263
101 3300025915 Ga0207693_10191029 Ga0207693_101910292 263
102 3300025921 Ga0207652_10000283 Ga0207652_1000028312 263
103 3300025928 Ga0207700_10000003 Ga0207700_10000003370 263
104 3300025944 Ga0207661_10028075 Ga0207661_100280755 263
105 3300026067 Ga0207678_10000710 Ga0207678_100007105 263
106 3300044706 Ga0466964_0154462 Ga0466964_0154462_73_864 263
107 3300045976 Ga0466967_0276407 Ga0466967_0276407_199_990 263
108 3300048913 Ga0496110_0005505 Ga0496110_0005505_4540_5337 263
109 3300048913 Ga0496110_0745623 Ga0496110_0745623_20_814 263
110 3300048914 Ga0496111_0008346 Ga0496111_0008346_3387_4184 263
111 3300053077 Ga0495601_0177129 Ga0495601_0177129_365_1204 263
112 3300005329 Ga0070683_100005656 Ga0070683_10000565610 264
113 3300005458 Ga0070681_10062165 Ga0070681_100621653 264
114 3300005614 Ga0068856_100086350 Ga0068856_1000863503 264
115 3300013105 Ga0157369_10184568 Ga0157369_101845684 264
116 3300013307 Ga0157372_10394133 Ga0157372_103941332 264
117 3300020082 Ga0206353_11160348 Ga0206353_111603482 264
118 3300025912 Ga0207707_10036584 Ga0207707_100365843 264
119 3300025944 Ga0207661_10245012 Ga0207661_102450122 264
120 3300026078 Ga0207702_10354103 Ga0207702_103541031 264
121 3300037418 Ga0395900_0344254 Ga0395900_0344254_427_1224 264
122 3300037466 Ga0395898_0525079 Ga0395898_0525079_272_1069 264
123 3300038443 Ga0395901_0452003 Ga0395901_0452003_367_1164 264
124 3300005327 Ga0070658_10176103 Ga0070658_101761032 265
125 3300005329 Ga0070683_100016472 Ga0070683_1000164724 265
126 3300005336 Ga0070680_100003139 Ga0070680_10000313912 265
127 3300005339 Ga0070660_100020947 Ga0070660_1000209473 265
128 3300005341 Ga0070691_10147493 Ga0070691_101474931 265
129 3300005344 Ga0070661_100044524 Ga0070661_1000445242 265
130 3300005458 Ga0070681_10531508 Ga0070681_105315082 265
131 3300005535 Ga0070684_100078437 Ga0070684_1000784372 265
132 3300005539 Ga0068853_100163725 Ga0068853_1001637251 265
133 3300009093 Ga0105240_10097748 Ga0105240_100977483 265
134 3300009551 Ga0105238_10012730 Ga0105238_100127303 265
135 3300013104 Ga0157370_10046784 Ga0157370_100467842 265
136 3300013105 Ga0157369_10266206 Ga0157369_102662063 265
137 3300013307 Ga0157372_10059407 Ga0157372_100594072 265
138 3300020082 Ga0206353_11209900 Ga0206353_112099002 265
139 3300025917 Ga0207660_10036348 Ga0207660_100363483 265
140 3300025919 Ga0207657_10039271 Ga0207657_100392712 265
141 3300025921 Ga0207652_10025539 Ga0207652_100255394 265
142 3300025924 Ga0207694_10197164 Ga0207694_101971643 265
143 3300025944 Ga0207661_10010654 Ga0207661_100106544 265
144 3300025949 Ga0207667_10279774 Ga0207667_102797743 265
145 3300026067 Ga0207678_10270555 Ga0207678_102705552 265
146 3300026116 Ga0207674_10093540 Ga0207674_100935402 265
147 3300026142 Ga0207698_10008855 Ga0207698_100088557 265

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13442

Cytochrome_CBB3

Cytochrome C oxidase, cbb3-type, subunit III

159

232

0.84

PF13442

Cytochrome_CBB3

Cytochrome C oxidase, cbb3-type, subunit III

55

142

0.74

PF00034

Cytochrom_C

Cytochrome c

57

145

0.72

PF00034

Cytochrom_C

Cytochrome c

161

236

0.67

Structural Annotation

Top 5 Hits

ID Description Score Start End
1diq-assembly1.cif.gz_D crystal structure of p-cresol methylhydroxylase with substrate bound 0.7938 149 219
6u97-assembly1.cif.gz_A structure of omcf_h47i mutant 0.7841 149 217
6tsy-assembly4.cif.gz_D cytochrome c6 from thermosynechococcus elongatus in a monoclinic space group 0.7728 146 220
2zbo-assembly1.cif.gz_A crystal structure of low-redox-potential cytochrom c6 from brown alga hizikia fusiformis at 1.6 a resolution 0.7694 144 223
6rte-assembly1.cif.gz_A dihydro-heme d1 dehydrogenase nirn in complex with dhe 0.7643 148 217
ID Description Score Start End Superfamily
af_P9WP35_148_241_1.10.760.10 Mainly Alpha;Orthogonal Bundle;Cytochrome Bc1 Complex; Chain D, domain 2;Cytochrome c-like domain 0.9596 142 221 1.10.760.10
af_P9WP35_148_241_1.10.760.10 Mainly Alpha;Orthogonal Bundle;Cytochrome Bc1 Complex; Chain D, domain 2;Cytochrome c-like domain 0.8109 142 221 1.10.760.10
2zboK00 Mainly Alpha;Orthogonal Bundle;Cytochrome Bc1 Complex; Chain D, domain 2;Cytochrome c-like domain 0.7808 144 223 1.10.760.10
1wveC00 Mainly Alpha;Orthogonal Bundle;Cytochrome Bc1 Complex; Chain D, domain 2;Cytochrome c-like domain 0.7713 149 219 1.10.760.10
4ljiB00 Mainly Alpha;Orthogonal Bundle;Cytochrome Bc1 Complex; Chain D, domain 2;Cytochrome c-like domain 0.7348 146 217 1.10.760.10
ID Description Score Start End GO Terms
AF-A0A1F8RVB7-F1-model_v4 Cytochrome c domain-containing protein 0.9293 140 221 GO:0009055
GO:0016020
GO:0020037
GO:0046872
AF-A0A521UT00-F1-model_v4 Cytochrome c 0.9149 137 219 GO:0009055
GO:0020037
GO:0046872
AF-A0A2G0CH25-F1-model_v4 Cytochrome C 0.898 146 223 GO:0009055
GO:0020037
GO:0046872
AF-A0A7C5B1X5-F1-model_v4 Cytochrome c 0.8923 146 221 GO:0009055
GO:0020037
GO:0046872
AF-M7N5T0-F1-model_v4 p-cresol methylhydroxylase cytochrome subunit 0.8899 146 224 GO:0009055
GO:0020037
GO:0046872

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Predicted Structure (AlphaFold2)

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