F201150

General Info

Members Datasets Scaffolds Average Seq Length
147 96 294 232

Family's Representative Sequence

Representative Sequence 3300044693|Ga0466961_0099103|Ga0466961_0099103_695_1480
Length 261
Sequence MRLNAWLARAGVASRRKADELIKAGRVTVNGAPGQLNTFVRGDDDVRLDGERLVAQRLAYVLLNKPVGVVTTAHDPQGRPTVVALVEHAARVVPVGRLDVDTTGALLLTNDGELAHRLAHPRYEVDKVYEVETWKPTSDDQLGALREGVELDDGPTRPADVRRLDINRFELTIHEGRNRQVRRMVEAVGHRVKHLHRGRYGPLTLEGLEPGAWRELEPSEVELLRVTTQRAPRPGRAGSAPERSTTSPPARSAPGRRTPQR

Samples

Sample ID Description Type Environment
1 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
4 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
5 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
6 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
7 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
8 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
9 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
10 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
11 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
12 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
13 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
14 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
15 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
16 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
17 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
18 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
19 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
20 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
23 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
24 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
25 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
26 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
27 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
28 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
29 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
30 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
31 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
32 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
33 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
34 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
35 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
36 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
37 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
38 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
39 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
40 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
41 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
42 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
43 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
44 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
45 3300042123 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0117W_E14_082716_2228 Metagenome Rhizosphere
46 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
47 3300042133 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB1023D_E14_070716_134 Metagenome Rhizosphere
48 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
49 3300042147 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_080116_2618 Metagenome Rhizosphere
50 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
51 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
52 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
53 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
54 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
55 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
56 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
57 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
58 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
59 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
60 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
61 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
62 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
63 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
64 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
65 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
66 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
67 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
68 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
69 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
70 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
71 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
72 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
77 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
80 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
81 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
82 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
83 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
84 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
85 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
86 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
87 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
88 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
89 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
90 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
92 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
93 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
94 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
95 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
96 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 6.8
Rhizosphere 93.2
Stem 0
Stem Tuber 0
Unclassified 4.76

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466961_0099103 3300044693 Bacteria 1837
2 Ga0070683_100225048 3300005329 Bacteria 1783
3 Ga0070711_100835430 3300005439 Bacteria 783
4 Ga0070693_100063851 3300005547 Bacteria 2148
5 Ga0068857_100022129 3300005577 Bacteria 5592
6 Ga0068856_100359952 3300005614 Bacteria 1473
7 Ga0068870_10004635 3300005840 Bacteria 5929
8 Ga0081538_10000085 3300005981 Bacteria 89830
9 Ga0081538_10033878 3300005981 Bacteria 3390
10 Ga0081539_10147589 3300005985 Unclassified 1135
11 Ga0070717_10078435 3300006028 Bacteria 2768
12 Ga0070712_100010503 3300006175 Bacteria 5845
13 Ga0111539_10092220 3300009094 Unclassified 3560
14 Ga0105245_10346432 3300009098 Bacteria 1471
15 Ga0114129_10071837 3300009147 Bacteria 4825
16 Ga0105246_10182762 3300011119 Bacteria 1616
17 Ga0157372_10062786 3300013307 Bacteria 4163
18 Ga0157380_10036186 3300014326 Bacteria 3818
19 Ga0157377_10152086 3300014745 Bacteria 1431
20 Ga0207643_10005394 3300025908 Bacteria 6843
21 Ga0207650_10161857 3300025925 Bacteria 1774
22 Ga0207658_10142180 3300025986 Bacteria 1943
23 Ga0207674_10052749 3300026116 Bacteria 4146
24 Ga0207674_10084641 3300026116 Bacteria 3169
25 Ga0265338_10002198 3300028800 Bacteria 29876
26 Ga0307408_100039683 3300031548 Bacteria 3330
27 Ga0265313_10013745 3300031595 Bacteria 4829
28 Ga0265313_10068628 3300031595 Bacteria 1638
29 Ga0307410_10031743 3300031852 Bacteria 3393
30 Ga0307406_10189653 3300031901 Bacteria 1504
31 Ga0307416_100229719 3300032002 Bacteria 1787
32 Ga0307416_100471087 3300032002 Bacteria 1314
33 Ga0307415_100073577 3300032126 Bacteria 2411
34 Ga0307415_100182643 3300032126 Bacteria 1647
35 Ga0373926_0041137 3300035083 Bacteria 1651
36 Ga0373945_0003583 3300035116 Bacteria 4891
37 Ga0373946_0065493 3300035171 Bacteria 1556
38 Ga0373955_0094711 3300035172 Bacteria 1707
39 Ga0373927_0107049 3300035695 Bacteria 1821
40 Ga0373925_0036075 3300037068 Bacteria 3650
41 Ga0395899_0017981 3300037312 Bacteria 5379
42 Ga0395899_0020852 3300037312 Bacteria 4970
43 Ga0395899_0042386 3300037312 Bacteria 3398
44 Ga0395899_0055539 3300037312 Bacteria 2929
45 Ga0395900_0005957 3300037418 Bacteria 12729
46 Ga0395900_0118687 3300037418 Bacteria 2714
47 Ga0395900_0145332 3300037418 Bacteria 2425
48 Ga0395898_0005180 3300037466 Bacteria 14105
49 Ga0395898_0020763 3300037466 Bacteria 6667
50 Ga0395898_0025653 3300037466 Bacteria 5937
51 Ga0395898_0219587 3300037466 Bacteria 1813
52 Ga0395905_0003984 3300037471 Bacteria 15530
53 Ga0395905_0006094 3300037471 Bacteria 12181
54 Ga0395905_0051108 3300037471 Bacteria 3871
55 Ga0395901_0002832 3300038443 Bacteria 17516
56 Ga0395901_0014021 3300038443 Bacteria 8156
57 Ga0395901_0020840 3300038443 Bacteria 6711
58 Ga0395901_0031805 3300038443 Bacteria 5441
59 Ga0395901_0930080 3300038443 Bacteria 849
60 Ga0439439_0037757 3300041406 Bacteria 1246
61 Ga0439461_0000570 3300041410 Bacteria 5343
62 Ga0439461_0016818 3300041410 Bacteria 1416
63 Ga0439431_0009235 3300041997 Bacteria 2225
64 Ga0439445_0064603 3300042004 Bacteria 1005
65 Ga0450921_000360 3300042123 Bacteria 2072
66 Ga0450923_000038 3300042125 Bacteria 9654
67 Ga0450923_045331 3300042125 Bacteria 933
68 Ga0450896_002585 3300042133 Bacteria 2351
69 Ga0450898_001390 3300042134 Bacteria 3173
70 Ga0450910_007833 3300042147 Bacteria 1494
71 Ga0439446_0000562 3300042156 Bacteria 7529
72 Ga0439446_0008875 3300042156 Bacteria 2681
73 Ga0450908_016236 3300042184 Bacteria 1329
74 Ga0439434_0001298 3300042435 Bacteria 7198
75 Ga0439434_0038002 3300042435 Bacteria 1474
76 Ga0439435_0005191 3300042436 Bacteria 2853
77 Ga0439460_0010151 3300042461 Bacteria 2403
78 Ga0450918_014959 3300042531 Bacteria 1349
79 Ga0466966_0183362 3300044684 Bacteria 1270
80 Ga0466964_0098413 3300044706 Bacteria 1285
81 Ga0466957_0408059 3300044842 Bacteria 930
82 Ga0451576_0362290 3300045051 Bacteria 1519
83 Ga0466967_0000073 3300045976 Bacteria 37163
84 Ga0466967_0006670 3300045976 Bacteria 8207
85 Ga0466967_0006972 3300045976 Bacteria 8086
86 Ga0466967_0022950 3300045976 Bacteria 5104
87 Ga0495603_0008353 3300046455 Bacteria 6259
88 Ga0495641_0026605 3300046461 Unclassified 2820
89 Ga0495651_0248481 3300046462 Unclassified 1216
90 Ga0496102_0173457 3300048905 Bacteria 2030
91 Ga0496104_0289891 3300048907 Bacteria 1549
92 Ga0496105_0037217 3300048908 Bacteria 4007
93 Ga0496107_0063452 3300048910 Bacteria 2677
94 Ga0496109_0019563 3300048912 Bacteria 5973
95 Ga0496109_0021958 3300048912 Bacteria 5651
96 Ga0496112_0267973 3300048915 Bacteria 1656
97 Ga0496113_0128688 3300048916 Bacteria 1985
98 Ga0496114_0022307 3300048917 Bacteria 5159
99 Ga0496114_0251334 3300048917 Bacteria 1556
100 Ga0501031_0008772 3300049568 Bacteria 6577
101 Ga0501036_0047444 3300049572 Bacteria 3637
102 Ga0501037_0051854 3300049573 Bacteria 3001
103 Ga0501038_0013965 3300049574 Bacteria 7319
104 Ga0501039_0012324 3300049575 Bacteria 6522
105 Ga0501039_0178310 3300049575 Bacteria 1671
106 Ga0501039_0662648 3300049575 Bacteria 817
107 Ga0501040_0046643 3300049576 Bacteria 2958
108 Ga0501040_0153796 3300049576 Bacteria 1624
109 Ga0501042_0030664 3300049578 Bacteria 3800
110 Ga0501042_0110059 3300049578 Bacteria 1984
111 Ga0501067_0017628 3300049583 Bacteria 3952
112 Ga0501069_0027145 3300049585 Bacteria 3137
113 Ga0501069_0259304 3300049585 Bacteria 1015
114 Ga0501070_0056929 3300049586 Bacteria 3241
115 Ga0501071_0033546 3300049587 Bacteria 3647
116 Ga0501071_0087446 3300049587 Bacteria 2286
117 Ga0501072_0016294 3300049588 Bacteria 5702
118 Ga0501072_0052790 3300049588 Bacteria 3201
119 Ga0501072_0086513 3300049588 Bacteria 2487
120 Ga0501075_0086938 3300049591 Bacteria 2369
121 Ga0501076_0004517 3300049592 Bacteria 9906
122 Ga0501076_0458732 3300049592 Bacteria 1049
123 Ga0501077_0190520 3300049593 Bacteria 1303
124 Ga0501077_0218650 3300049593 Bacteria 1211
125 Ga0501079_0313903 3300049741 Bacteria 1227
126 Ga0501079_0595255 3300049741 Bacteria 870
127 Ga0501080_0241330 3300049742 Bacteria 1649
128 Ga0501080_0290798 3300049742 Bacteria 1484
129 Ga0501081_0042672 3300049743 Bacteria 3109
130 Ga0501081_0444864 3300049743 Bacteria 962
131 Ga0501035_0026984 3300049822 Bacteria 5252
132 Ga0501035_0188543 3300049822 Bacteria 1774
133 Ga0501045_0291081 3300049824 Bacteria 1215
134 nmdc:mga05p37_201459_c1 3300050507 Unclassified 2410
135 nmdc:mga05p37_250070_c1 3300050507 Bacteria 2127
136 nmdc:mga05p37_31783_c1 3300050507 Bacteria 6450
137 nmdc:mga08y16_309761_c1 3300050511 Unclassified 1626
138 nmdc:mga08y16_395548_c1 3300050511 Unclassified 1415
139 Ga0501082_0433946 3300060353 Bacteria 1147
140 Ga0466962_0038812 3300061719 Bacteria 2281
141 Ga0466962_0062873 3300061719 Bacteria 1773
142 Ga0530510_0065550 3300061734 Bacteria 2632
143 Ga0530510_0106146 3300061734 Bacteria 2056
144 Ga0530510_0264249 3300061734 Bacteria 1284
145 Ga0530510_0280794 3300061734 Bacteria 1244
146 Ga0530510_0350348 3300061734 Bacteria 1109
147 Ga0530510_0484245 3300061734 Bacteria 937
148 Ga0466961_0099103
149 Ga0070683_100225048
150 Ga0070711_100835430
151 Ga0070693_100063851
152 Ga0068857_100022129
153 Ga0068856_100359952
154 Ga0068870_10004635
155 Ga0081538_10000085
156 Ga0081538_10033878
157 Ga0081539_10147589
158 Ga0070717_10078435
159 Ga0070712_100010503
160 Ga0111539_10092220
161 Ga0105245_10346432
162 Ga0114129_10071837
163 Ga0105246_10182762
164 Ga0157372_10062786
165 Ga0157380_10036186
166 Ga0157377_10152086
167 Ga0207643_10005394
168 Ga0207650_10161857
169 Ga0207658_10142180
170 Ga0207674_10052749
171 Ga0207674_10084641
172 Ga0265338_10002198
173 Ga0307408_100039683
174 Ga0265313_10013745
175 Ga0265313_10068628
176 Ga0307410_10031743
177 Ga0307406_10189653
178 Ga0307416_100229719
179 Ga0307416_100471087
180 Ga0307415_100073577
181 Ga0307415_100182643
182 Ga0373926_0041137
183 Ga0373945_0003583
184 Ga0373946_0065493
185 Ga0373955_0094711
186 Ga0373927_0107049
187 Ga0373925_0036075
188 Ga0395899_0017981
189 Ga0395899_0020852
190 Ga0395899_0042386
191 Ga0395899_0055539
192 Ga0395900_0005957
193 Ga0395900_0118687
194 Ga0395900_0145332
195 Ga0395898_0005180
196 Ga0395898_0020763
197 Ga0395898_0025653
198 Ga0395898_0219587
199 Ga0395905_0003984
200 Ga0395905_0006094
201 Ga0395905_0051108
202 Ga0395901_0002832
203 Ga0395901_0014021
204 Ga0395901_0020840
205 Ga0395901_0031805
206 Ga0395901_0930080
207 Ga0439439_0037757
208 Ga0439461_0000570
209 Ga0439461_0016818
210 Ga0439431_0009235
211 Ga0439445_0064603
212 Ga0450921_000360
213 Ga0450923_000038
214 Ga0450923_045331
215 Ga0450896_002585
216 Ga0450898_001390
217 Ga0450910_007833
218 Ga0439446_0000562
219 Ga0439446_0008875
220 Ga0450908_016236
221 Ga0439434_0001298
222 Ga0439434_0038002
223 Ga0439435_0005191
224 Ga0439460_0010151
225 Ga0450918_014959
226 Ga0466966_0183362
227 Ga0466964_0098413
228 Ga0466957_0408059
229 Ga0451576_0362290
230 Ga0466967_0000073
231 Ga0466967_0006670
232 Ga0466967_0006972
233 Ga0466967_0022950
234 Ga0495603_0008353
235 Ga0495641_0026605
236 Ga0495651_0248481
237 Ga0496102_0173457
238 Ga0496104_0289891
239 Ga0496105_0037217
240 Ga0496107_0063452
241 Ga0496109_0019563
242 Ga0496109_0021958
243 Ga0496112_0267973
244 Ga0496113_0128688
245 Ga0496114_0022307
246 Ga0496114_0251334
247 Ga0501031_0008772
248 Ga0501036_0047444
249 Ga0501037_0051854
250 Ga0501038_0013965
251 Ga0501039_0012324
252 Ga0501039_0178310
253 Ga0501039_0662648
254 Ga0501040_0046643
255 Ga0501040_0153796
256 Ga0501042_0030664
257 Ga0501042_0110059
258 Ga0501067_0017628
259 Ga0501069_0027145
260 Ga0501069_0259304
261 Ga0501070_0056929
262 Ga0501071_0033546
263 Ga0501071_0087446
264 Ga0501072_0016294
265 Ga0501072_0052790
266 Ga0501072_0086513
267 Ga0501075_0086938
268 Ga0501076_0004517
269 Ga0501076_0458732
270 Ga0501077_0190520
271 Ga0501077_0218650
272 Ga0501079_0313903
273 Ga0501079_0595255
274 Ga0501080_0241330
275 Ga0501080_0290798
276 Ga0501081_0042672
277 Ga0501081_0444864
278 Ga0501035_0026984
279 Ga0501035_0188543
280 Ga0501045_0291081
281 nmdc:mga05p37_201459_c1
282 nmdc:mga05p37_250070_c1
283 nmdc:mga05p37_31783_c1
284 nmdc:mga08y16_309761_c1
285 nmdc:mga08y16_395548_c1
286 Ga0501082_0433946
287 Ga0466962_0038812
288 Ga0466962_0062873
289 Ga0530510_0065550
290 Ga0530510_0106146
291 Ga0530510_0264249
292 Ga0530510_0280794
293 Ga0530510_0350348
294 Ga0530510_0484245

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01479

S4

S4 domain

1

46

0.93

PF00849

PseudoU_synth_2

RNA pseudouridylate synthase

59

187

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
5z81-assembly1.cif.gz_C trimeric structure of vibrio cholerae heat shock protein 15 at 2.3 angstrom resolution 0.9397 1 44
8d8l-assembly1.cif.gz_D yeast mitochondrial small subunit assembly intermediate (state 3) 0.9344 5 47
7pic-assembly1.cif.gz_C 70s ribosome with p/e-site trna in spectinomycin-treated mycoplasma pneumoniae cells 0.9178 1 46
7asa-assembly1.cif.gz_1 bacillus subtilis ribosome-associated quality control complex state b, multibody refinement focussed on rqch. ribosomal 50s subunit with p-trna, rqch, and rqcp/yabo 0.9163 1 46
4v47-assembly1.cif.gz_BD real space refined coordinates of the 30s and 50s subunits fitted into the low resolution cryo-em map of the ef-g.gtp state of e. coli 70s ribosome 0.9114 1 46
ID Description Score Start End Superfamily
3dh3A01 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.9805 1 54 3.10.290.10
af_Q2FY78_132_218_3.30.70.1560 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Alpha-L RNA-binding motif 0.9767 124 202 3.30.70.1560
af_Q4D8U8_345_395_3.10.290.10 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.9746 1 47 3.10.290.10
af_P9WHQ1_10_70_3.10.290.10 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.9704 1 52 3.10.290.10
af_A0A1D6JNZ0_152_214_3.10.290.10 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.97 1 51 3.10.290.10
ID Description Score Start End GO Terms
AF-A0A3C0HMZ6-F1-model_v4 Pseudouridine synthase (EC 5.4.99.-) 0.9878 63 229 GO:0001522
GO:0003723
GO:0006364
GO:0009982
GO:0140098
AF-A0A2H0VKL1-F1-model_v4 Pseudouridine synthase (EC 5.4.99.-) 0.9766 57 222 GO:0001522
GO:0003723
GO:0006364
GO:0009982
GO:0140098
AF-A0A4Q5Y459-F1-model_v4 deleted 0.9765 89 224
AF-A0A538G921-F1-model_v4 Pseudouridine synthase (EC 5.4.99.-) 0.9758 84 229 GO:0001522
GO:0003723
GO:0006364
GO:0009982
GO:0140098
AF-A0A538HMC1-F1-model_v4 Pseudouridine synthase (EC 5.4.99.-) 0.9722 34 225 GO:0001522
GO:0003723
GO:0006364
GO:0009982
GO:0140098

Map