F200950

General Info

Members Datasets Scaffolds Average Seq Length
147 65 294 462

Family's Representative Sequence

Representative Sequence 3300035398|Ga0316574_0040032|Ga0316574_0040032_125_1582
Length 485
Sequence MLSERFAYRPGGIQSMPQPTHSLSIEPTRIQPLNQKKMTDGDFVLYWMQQSQRAEENHALEYAVELANHLDRPMVVVFGLTNGYPEANLRHYRFMLEGLRETSATLSKRGIQMAVQLGSPPDVALKAGQRAAVIVCDCGYLRFQKAWRQSVARKAACRVVQVEADVVVPVAVTSSKAEYAARTLRPKITRYLNEYLKEFRVVPLKYSSLELGIKNLASNLNLEAIDALQSRLDVDRSVEPVNHFFKGGTREAKKRLKKFLNQSLKHYPDHHNQPQTDDISHMSPYLHFGQISPLYVALQVKAVDGRAVGLGAIEAYLEQLIVRRELAVNFVNFTPNYDTYDCIPGWASQTLADHLSDERPNCYSRRQLENAETHDPYWNAAMLEMKHTGFMHNYMRMYWGKKILEWSRTPQQAFDTTLALNNKYFLDGRDPNSYTGVAWIYGVHDRPWPERPIFGKTRFMAASGLERKCDILAYVKKINKTIGKD

Samples

Sample ID Description Type Environment
1 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
4 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
5 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
6 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
7 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
8 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
9 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
10 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
11 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
12 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
13 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
14 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
15 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
16 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
17 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
18 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
19 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
20 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
21 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
22 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
23 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
24 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
25 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
26 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
27 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
28 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
29 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
30 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
31 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
32 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
33 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
34 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
35 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
36 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
37 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
38 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
39 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
40 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
41 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
42 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
43 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
44 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
45 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
46 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
47 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
48 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
49 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
50 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
51 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
52 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
53 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
54 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
55 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
56 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
57 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
58 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
59 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
60 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
61 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
62 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
63 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
64 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
65 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.28
Metatranscriptomes 2.72
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 85.03
Stem 0
Stem Tuber 0
Unclassified 9.52

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0316574_0040032 3300035398 Bacteria 2884
2 Ga0070683_100000319 3300005329 Bacteria 33137
3 Ga0070661_100064935 3300005344 Bacteria 2682
4 Ga0070684_100031157 3300005535 Bacteria 4538
5 Ga0068863_100165831 3300005841 Bacteria 2118
6 Ga0068871_100154745 3300006358 Bacteria 1957
7 Ga0105240_10000659 3300009093 Bacteria 63675
8 Ga0105245_10019589 3300009098 Bacteria 5927
9 Ga0105239_10410459 3300010375 Bacteria 1533
10 Ga0163163_10066381 3300014325 Bacteria 3583
11 Ga0157380_10118596 3300014326 Bacteria 2237
12 Ga0213876_10021520 3300021384 Bacteria 3410
13 Ga0207695_10000732 3300025913 Bacteria 63757
14 Ga0207649_10047802 3300025920 Bacteria 2636
15 Ga0207691_10053457 3300025940 Bacteria 3687
16 Ga0207661_10006199 3300025944 Bacteria 8457
17 Ga0207651_10192069 3300025960 Bacteria 1630
18 Ga0207678_10011161 3300026067 Bacteria 7890
19 Ga0316575_10000215 3300031665 Bacteria 15348
20 Ga0316575_10001550 3300031665 Bacteria 7451
21 Ga0316575_10014576 3300031665 Unclassified 2953
22 Ga0316575_10041391 3300031665 Bacteria 1822
23 Ga0316579_10001445 3300031691 Bacteria 8626
24 Ga0316579_10002157 3300031691 Bacteria 7392
25 Ga0316579_10009367 3300031691 Bacteria 4115
26 Ga0316576_10001184 3300031727 Bacteria 13723
27 Ga0316576_10008137 3300031727 Bacteria 6658
28 Ga0316576_10011312 3300031727 Bacteria 5843
29 Ga0316576_10016641 3300031727 Bacteria 4974
30 Ga0316576_10026169 3300031727 Bacteria 4091
31 Ga0316576_10028648 3300031727 Bacteria 3928
32 Ga0316576_10032921 3300031727 Bacteria 3686
33 Ga0316576_10039907 3300031727 Bacteria 3371
34 Ga0316576_10040839 3300031727 Unclassified 3336
35 Ga0316576_10078594 3300031727 Bacteria 2445
36 Ga0316576_10080228 3300031727 Bacteria 2420
37 Ga0316576_10122638 3300031727 Unclassified 1952
38 Ga0316576_10209558 3300031727 Bacteria 1467
39 Ga0316578_10000071 3300031728 Bacteria 22826
40 Ga0316578_10004642 3300031728 Bacteria 6514
41 Ga0316578_10018525 3300031728 Unclassified 3818
42 Ga0316578_10020862 3300031728 Bacteria 3627
43 Ga0316578_10025616 3300031728 Bacteria 3318
44 Ga0316578_10058485 3300031728 Bacteria 2267
45 Ga0316578_10064527 3300031728 Bacteria 2161
46 Ga0316577_10002153 3300031733 Bacteria 9646
47 Ga0316577_10003711 3300031733 Bacteria 7767
48 Ga0316577_10008269 3300031733 Bacteria 5573
49 Ga0316577_10008592 3300031733 Bacteria 5477
50 Ga0316577_10011190 3300031733 Bacteria 4858
51 Ga0316577_10024224 3300031733 Bacteria 3374
52 Ga0316577_10024395 3300031733 Bacteria 3362
53 Ga0316577_10030154 3300031733 Unclassified 3028
54 Ga0316577_10076638 3300031733 Bacteria 1867
55 Ga0307407_10010888 3300031903 Bacteria 4308
56 Ga0307416_100174704 3300032002 Bacteria 2005
57 Ga0316583_10000406 3300032133 Bacteria 12583
58 Ga0316583_10000832 3300032133 Bacteria 9813
59 Ga0316583_10006073 3300032133 Bacteria 4342
60 Ga0316583_10009325 3300032133 Unclassified 3534
61 Ga0316583_10044269 3300032133 Bacteria 1573
62 Ga0316585_10001073 3300032137 Bacteria 7102
63 Ga0316585_10001512 3300032137 Bacteria 6152
64 Ga0316585_10004171 3300032137 Bacteria 4013
65 Ga0316585_10006396 3300032137 Bacteria 3367
66 Ga0316585_10023847 3300032137 Bacteria 1889
67 Ga0316580_10007490 3300032139 Unclassified 3252
68 Ga0316593_10010245 3300032168 Bacteria 2681
69 Ga0316593_10018341 3300032168 Bacteria 2149
70 Ga0316592_1001472 3300033524 Bacteria 3802
71 Ga0316596_1007622 3300033541 Bacteria 2562
72 Ga0373955_0028711 3300035172 Bacteria 2887
73 Ga0316574_0004352 3300035398 Bacteria 7401
74 Ga0316574_0010694 3300035398 Bacteria 5194
75 Ga0316574_0023355 3300035398 Bacteria 3692
76 Ga0316574_0038722 3300035398 Bacteria 2928
77 Ga0316574_0055855 3300035398 Bacteria 2468
78 Ga0316574_0065469 3300035398 Unclassified 2288
79 Ga0373947_0037387 3300035725 Bacteria 2881
80 Ga0373937_0015737 3300036401 Bacteria 6699
81 Ga0316582_0002220 3300036647 Bacteria 9019
82 Ga0316582_0002824 3300036647 Bacteria 8303
83 Ga0316582_0004677 3300036647 Bacteria 6955
84 Ga0316582_0005612 3300036647 Bacteria 6487
85 Ga0316582_0024269 3300036647 Bacteria 3627
86 Ga0316582_0047260 3300036647 Bacteria 2716
87 Ga0316582_0070618 3300036647 Bacteria 2260
88 Ga0316582_0076388 3300036647 Unclassified 2178
89 Ga0316582_0117705 3300036647 Unclassified 1775
90 Ga0316582_0131801 3300036647 Bacteria 1680
91 Ga0316584_0000349 3300036712 Bacteria 23836
92 Ga0316584_0000425 3300036712 Bacteria 22007
93 Ga0316584_0000714 3300036712 Bacteria 18478
94 Ga0316584_0003970 3300036712 Bacteria 9731
95 Ga0316584_0005219 3300036712 Bacteria 8687
96 Ga0316584_0005877 3300036712 Bacteria 8282
97 Ga0316584_0006069 3300036712 Bacteria 8165
98 Ga0316584_0009774 3300036712 Bacteria 6675
99 Ga0316584_0011160 3300036712 Bacteria 6307
100 Ga0316584_0013079 3300036712 Bacteria 5866
101 Ga0316584_0028737 3300036712 Bacteria 4103
102 Ga0316584_0033730 3300036712 Bacteria 3793
103 Ga0316584_0060405 3300036712 Unclassified 2839
104 Ga0316584_0190030 3300036712 Unclassified 1518
105 Ga0316581_0004387 3300037588 Unclassified 3597
106 Ga0400484_27847 3300038725 Bacteria 2081
107 Ga0400484_35499 3300038725 Bacteria 25127
108 Ga0400490_15129 3300038726 Bacteria 4817
109 Ga0400490_22417 3300038726 Bacteria 47250
110 Ga0400490_32473 3300038726 Bacteria 1805
111 Ga0400485_06479 3300038735 Bacteria 4972
112 Ga0400485_08355 3300038735 Bacteria 9509
113 Ga0400488_18480 3300038741 Bacteria 3485
114 Ga0400488_22322 3300038741 Bacteria 2649
115 Ga0400488_27801 3300038741 Bacteria 2279
116 Ga0400486_23694 3300038742 Bacteria 5580
117 Ga0400486_30743 3300038742 Bacteria 11336
118 Ga0400486_31955 3300038742 Bacteria 54509
119 Ga0400483_014934 3300039062 Bacteria 5489
120 Ga0400483_049272 3300039062 Bacteria 66677
121 Ga0400483_061853 3300039062 Bacteria 5731
122 Ga0400483_145799 3300039062 Bacteria 10180
123 Ga0400483_252461 3300039062 Bacteria 33154
124 Ga0400483_261446 3300039062 Unclassified 2569
125 Ga0400489_65983 3300039093 Bacteria 24102
126 Ga0436360_0343928 3300039438 Bacteria 3418
127 Ga0436363_1661887 3300039450 Bacteria 1905
128 Ga0453684_0216308 3300044712 Archaea 2223
129 Ga0451576_0000092 3300045051 Bacteria 227293
130 Ga0495587_0007299 3300046536 Bacteria 7164
131 Ga0495602_0172832 3300048088 Bacteria 1675
132 Ga0501036_0035023 3300049572 Bacteria 4247
133 Ga0501040_0059166 3300049576 Bacteria 2632
134 Ga0501041_0024896 3300049577 Bacteria 3595
135 Ga0501042_0031957 3300049578 Bacteria 3725
136 Ga0501048_0040340 3300049582 Bacteria 3346
137 Ga0501048_0062681 3300049582 Bacteria 2631
138 Ga0501068_0045260 3300049584 Bacteria 2651
139 Ga0501071_0097068 3300049587 Bacteria 2169
140 Ga0501072_0145099 3300049588 Bacteria 1892
141 Ga0501076_0052571 3300049592 Bacteria 3227
142 Ga0501079_0050385 3300049741 Bacteria 3214
143 Ga0501080_0175764 3300049742 Bacteria 1972
144 Ga0501035_0043072 3300049822 Bacteria 4069
145 Ga0501045_0050968 3300049824 Bacteria 3020
146 Ga0590077_012941 3300059426 Bacteria 1732
147 Ga0501082_0112568 3300060353 Bacteria 2356
148 Ga0316574_0040032
149 Ga0070683_100000319
150 Ga0070661_100064935
151 Ga0070684_100031157
152 Ga0068863_100165831
153 Ga0068871_100154745
154 Ga0105240_10000659
155 Ga0105245_10019589
156 Ga0105239_10410459
157 Ga0163163_10066381
158 Ga0157380_10118596
159 Ga0213876_10021520
160 Ga0207695_10000732
161 Ga0207649_10047802
162 Ga0207691_10053457
163 Ga0207661_10006199
164 Ga0207651_10192069
165 Ga0207678_10011161
166 Ga0316575_10000215
167 Ga0316575_10001550
168 Ga0316575_10014576
169 Ga0316575_10041391
170 Ga0316579_10001445
171 Ga0316579_10002157
172 Ga0316579_10009367
173 Ga0316576_10001184
174 Ga0316576_10008137
175 Ga0316576_10011312
176 Ga0316576_10016641
177 Ga0316576_10026169
178 Ga0316576_10028648
179 Ga0316576_10032921
180 Ga0316576_10039907
181 Ga0316576_10040839
182 Ga0316576_10078594
183 Ga0316576_10080228
184 Ga0316576_10122638
185 Ga0316576_10209558
186 Ga0316578_10000071
187 Ga0316578_10004642
188 Ga0316578_10018525
189 Ga0316578_10020862
190 Ga0316578_10025616
191 Ga0316578_10058485
192 Ga0316578_10064527
193 Ga0316577_10002153
194 Ga0316577_10003711
195 Ga0316577_10008269
196 Ga0316577_10008592
197 Ga0316577_10011190
198 Ga0316577_10024224
199 Ga0316577_10024395
200 Ga0316577_10030154
201 Ga0316577_10076638
202 Ga0307407_10010888
203 Ga0307416_100174704
204 Ga0316583_10000406
205 Ga0316583_10000832
206 Ga0316583_10006073
207 Ga0316583_10009325
208 Ga0316583_10044269
209 Ga0316585_10001073
210 Ga0316585_10001512
211 Ga0316585_10004171
212 Ga0316585_10006396
213 Ga0316585_10023847
214 Ga0316580_10007490
215 Ga0316593_10010245
216 Ga0316593_10018341
217 Ga0316592_1001472
218 Ga0316596_1007622
219 Ga0373955_0028711
220 Ga0316574_0004352
221 Ga0316574_0010694
222 Ga0316574_0023355
223 Ga0316574_0038722
224 Ga0316574_0055855
225 Ga0316574_0065469
226 Ga0373947_0037387
227 Ga0373937_0015737
228 Ga0316582_0002220
229 Ga0316582_0002824
230 Ga0316582_0004677
231 Ga0316582_0005612
232 Ga0316582_0024269
233 Ga0316582_0047260
234 Ga0316582_0070618
235 Ga0316582_0076388
236 Ga0316582_0117705
237 Ga0316582_0131801
238 Ga0316584_0000349
239 Ga0316584_0000425
240 Ga0316584_0000714
241 Ga0316584_0003970
242 Ga0316584_0005219
243 Ga0316584_0005877
244 Ga0316584_0006069
245 Ga0316584_0009774
246 Ga0316584_0011160
247 Ga0316584_0013079
248 Ga0316584_0028737
249 Ga0316584_0033730
250 Ga0316584_0060405
251 Ga0316584_0190030
252 Ga0316581_0004387
253 Ga0400484_27847
254 Ga0400484_35499
255 Ga0400490_15129
256 Ga0400490_22417
257 Ga0400490_32473
258 Ga0400485_06479
259 Ga0400485_08355
260 Ga0400488_18480
261 Ga0400488_22322
262 Ga0400488_27801
263 Ga0400486_23694
264 Ga0400486_30743
265 Ga0400486_31955
266 Ga0400483_014934
267 Ga0400483_049272
268 Ga0400483_061853
269 Ga0400483_145799
270 Ga0400483_252461
271 Ga0400483_261446
272 Ga0400489_65983
273 Ga0436360_0343928
274 Ga0436363_1661887
275 Ga0453684_0216308
276 Ga0451576_0000092
277 Ga0495587_0007299
278 Ga0495602_0172832
279 Ga0501036_0035023
280 Ga0501040_0059166
281 Ga0501041_0024896
282 Ga0501042_0031957
283 Ga0501048_0040340
284 Ga0501048_0062681
285 Ga0501068_0045260
286 Ga0501071_0097068
287 Ga0501072_0145099
288 Ga0501076_0052571
289 Ga0501079_0050385
290 Ga0501080_0175764
291 Ga0501035_0043072
292 Ga0501045_0050968
293 Ga0590077_012941
294 Ga0501082_0112568

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00875

DNA_photolyase

DNA photolyase

44

204

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
5zcw-assembly2.cif.gz_B structure of the methanosarcina mazei class ii cpd-photolyase in complex with intact, phosphodiester linked, cpd-lesion 0.9537 4 450
8oy9-assembly2.cif.gz_B time-resolved sfx structure of the class ii photolyase complexed with a thymine dimer (1 microsecond pump-probe delay) 0.9535 6 449
8oyb-assembly2.cif.gz_B time-resolved sfx structure of the class ii photolyase complexed with a thymine dimer (30 microsecond pump-probe delay) 0.9534 4 450
7ye0-assembly2.cif.gz_B df-sfx mmcpdii-dna complex: steady state oxidized complex 0.9533 7 450
8oy8-assembly2.cif.gz_B time-resolved sfx structure of the class ii photolyase complexed with a thymine dimer (30 nanosecond timepoint) 0.9488 4 450
ID Description Score Start End Superfamily
af_Q9SB00_328_478_1.10.579.10 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.973 312 460 1.10.579.10
af_A0A1D6KCC6_330_425_1.10.579.10 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9585 315 397 1.10.579.10
af_Q9SB00_328_478_1.10.579.10 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9542 312 460 1.10.579.10
af_A0A0R4IS22_61_207_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9484 3 142 3.40.50.620
4u63A02 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.9422 223 295 1.25.40.80
ID Description Score Start End GO Terms
AF-A0A061R0M8-F1-model_v4 Deoxyribodipyrimidine photo-lyase 0.9908 315 453 GO:0000719
GO:0003904
AF-A0A6J4QP80-F1-model_v4 Deoxyribodipyrimidine photolyase, type II (EC 4.1.99.3) 0.9901 334 457 GO:0000719
GO:0003904
AF-A0A838PXM8-F1-model_v4 Deoxyribodipyrimidine photolyase 0.9895 329 456 GO:0000719
GO:0003904
AF-A0A1U9NPH0-F1-model_v4 Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) 0.9881 3 453 GO:0000719
GO:0003904
AF-A0A7V2UB29-F1-model_v4 Deoxyribodipyrimidine photolyase 0.9877 3 456 GO:0000719
GO:0003904

Map