F198923

General Info

Members Datasets Scaffolds Average Seq Length
146 120 118 426

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2508501125|2509129297
Length 478
Sequence RVADALVAAGHSVVCGVRDPVAAAERLRGCRLVALDFADLRDVASVMPLLAGVDVVINAVGIFSDATGHEFRRLHIDAPVTLFKAAVAAGVRRIVQISALGADAAAQSPYHRSKLAADEALLALPVSSLIVQPSLVFAPEGRSTRFFAAWATLPIVPLPGAGAQRIQPVHIDDVVALIVAGALAAPVRDAPGTEAALPRRVAAVGREPMTLKEYLAVLRSVAGAPRGGFLPVPMPLVRLATRLGALLPGSLMSADALAMLERGNVAPTDRFERLLGRAPRALREMPVDSEGFGARAKLMWLLPLLRASIAAVWIWTAIVSAGLYPRASSLELLARVGAPAALGPLLLYGAAFVDLMFGVLSLAWPRRLGPRARLWGLQIALIVLYTALISWRLPEFWLHPYGPLSKNLPMIALLILLIQFEEGSGRRPRRLANTATRPVSRTAATAPTTAPTTPPATPPTTPPTTPPTTPPATPPARQ

Samples

Sample ID Description Type Environment
1 2508501125 Burkholderia sp. WSM2232 Isolate Nodule
2 2513237151 Burkholderia sp. WSM2230 Isolate Nodule
3 2526164713 Paraburkholderia phenoliruptrix JPY366 Isolate Nodule
4 2643221585 Pelomonas sp. Root662 Isolate Unclassified
5 2643221592 Rhizobacter sp. Root16D2 Isolate Unclassified
6 2643221603 Noviherbaspirillum sp. Root189 Isolate Unclassified
7 2643221621 Achromobacter sp. Root83 Isolate Unclassified
8 2643221625 Rhizobacter sp. Root29 Isolate Unclassified
9 2643221648 Rhizobacter sp. Root1238 Isolate Unclassified
10 2643221656 Pelomonas sp. Root405 Isolate Unclassified
11 2738541296 Paraburkholderia sp. GV073 Isolate Unclassified
12 2738541298 Paraburkholderia sp. GV068 Isolate Unclassified
13 2738541306 Paraburkholderia sp. GV052 Isolate Unclassified
14 2738543002 Paraburkholderia sp. GV072 Isolate Unclassified
15 2738543008 Paraburkholderia sp. GV060 Isolate Unclassified
16 2834641062 Cupriavidus gilardii JZ4 Isolate Unclassified
17 2895498888 Pseudoxanthomonas sp. SGD-10 Isolate Rhizosphere
18 2895511927 Pseudoxanthomonas sp. SGD-5-1 Isolate Rhizosphere
19 2895522137 Pseudoxanthomonas sp. SGNA-20 Isolate Rhizosphere
20 2895525241 Pseudoxanthomonas sp. SGT-18 Isolate Rhizosphere
21 2919527303 Paraburkholderia strydomiana 3827 Isolate Unclassified
22 2928130867 Herbaspirillum seropedicae 1977 Isolate Unclassified
23 2945934425 Paraburkholderia graminis W1I13 Isolate Rhizosphere
24 2954767861 Variovorax sp. TBS-050B Isolate Rhizosphere
25 2990703756 Paraburkholderia graminis SLBN-33 Isolate Rhizosphere
26 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
27 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
28 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
29 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
30 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
31 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
32 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
33 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
34 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
35 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
36 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
37 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
38 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
39 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
40 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
41 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
42 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
43 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
44 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
45 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
46 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
47 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
48 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
50 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
51 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
52 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
53 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
55 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
64 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
65 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
66 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
67 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
68 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
69 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
70 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
71 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
72 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
73 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
74 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
75 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
76 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
77 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
78 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
79 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
80 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
81 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
82 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
83 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
84 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
85 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
86 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
87 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
88 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
89 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
90 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
91 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
92 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
93 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
96 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
107 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
108 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
109 3300049759 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C13_A_4_drought Metagenome Rhizosphere
110 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
111 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
114 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
115 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
116 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
117 641736151 Paraburkholderia graminis C4D1M Isolate Rhizoplane
118 8003400568 Cupriavidus gilardii USM5 Isolate Rhizosphere
119 8055266321 Paraburkholderia rhynchosiae LMG 27174 Isolate Nodule
120 8055301274 Paraburkholderia kirstenboschensis LMG 28727 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 80.14
Metatranscriptomes 0
Isolates 19.86

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.79
Nodule 4.79
Rhizoplane 2.05
Rhizosphere 70.55
Stem 0
Stem Tuber 0
Unclassified 17.81

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10015763 3300001989 Bacteria 2745
2 JGI25155J39150_1000531 3300002704 Bacteria 8908
3 JGI25156J39149_1002984 3300002705 Bacteria 5746
4 JGI25154J39366_1000925 3300002738 Bacteria 12344
5 rootH1_10126270 3300003316 Bacteria 1849
6 rootH1_10018083 3300003316 Bacteria 2184
7 rootH1_10018083 3300003323 Bacteria 11281
8 Ga0055533_1001532 3300003756 Bacteria 6032
9 Ga0055524_1000022 3300003775 Bacteria 224103
10 Ga0070661_100008401 3300005344 Bacteria 7135
11 Ga0070661_100026375 3300005344 Bacteria 4179
12 Ga0070659_100003302 3300005366 Bacteria 11491
13 Ga0070700_100015203 3300005441 Bacteria 4360
14 Ga0070662_100001333 3300005457 Bacteria 15172
15 Ga0068853_100312019 3300005539 Bacteria 1456
16 Ga0070665_100120704 3300005548 Bacteria 2623
17 Ga0070664_100014336 3300005564 Bacteria 6462
18 Ga0070664_100127939 3300005564 Bacteria 2229
19 Ga0068856_100224130 3300005614 Unclassified 1895
20 Ga0068866_10054927 3300005718 Unclassified 2043
21 Ga0099826_10000006 3300006948 Bacteria 432260
22 Ga0111539_10016612 3300009094 Bacteria 9121
23 Ga0157375_10131745 3300013308 Bacteria 2620
24 Ga0182008_10013279 3300014497 Bacteria 4330
25 Ga0209435_100096 3300025206 Bacteria 38561
26 Ga0209674_100290 3300025226 Bacteria 36375
27 Ga0209646_1000093 3300025246 Bacteria 183840
28 Ga0209026_1006092 3300025250 Bacteria 3053
29 Ga0209759_1000053 3300025256 Bacteria 212789
30 Ga0209759_1000248 3300025256 Bacteria 80537
31 Ga0209565_1002551 3300025263 Bacteria 6474
32 Ga0209564_1010835 3300025295 Bacteria 4152
33 Ga0209256_1000035 3300025299 Bacteria 386754
34 Ga0207647_10006184 3300025904 Bacteria 8723
35 Ga0207657_10164992 3300025919 Bacteria 1797
36 Ga0207649_10009554 3300025920 Bacteria 5311
37 Ga0207649_10124569 3300025920 Bacteria 1742
38 Ga0207690_10005063 3300025932 Bacteria 7783
39 Ga0207706_10001163 3300025933 Bacteria 26674
40 Ga0207679_10001331 3300025945 Bacteria 15616
41 Ga0207679_10040814 3300025945 Bacteria 3324
42 Ga0207708_10078259 3300026075 Bacteria 2538
43 Ga0207648_10244945 3300026089 Unclassified 1597
44 Ga0209371_1005904 3300027312 Bacteria 4704
45 Ga0209282_1000003 3300027666 Bacteria 856377
46 Ga0207428_10056594 3300027907 Unclassified 3115
47 Ga0207428_10134507 3300027907 Bacteria 1890
48 Ga0307515_10086703 3300028794 Bacteria 3987
49 Ga0268256_1007711 3300030500 Bacteria 3794
50 Ga0316182_1084939 3300030745 Bacteria 2572
51 Ga0307412_10000014 3300031911 Bacteria 353795
52 Ga0307412_10023136 3300031911 Bacteria 3820
53 Ga0395899_0012960 3300037312 Bacteria 6377
54 Ga0395900_0038443 3300037418 Bacteria 4932
55 Ga0395900_0127521 3300037418 Bacteria 2609
56 Ga0395905_0000514 3300037471 Bacteria 52950
57 Ga0395905_0005195 3300037471 Bacteria 13336
58 Ga0395905_0008422 3300037471 Bacteria 10170
59 Ga0395905_0082269 3300037471 Bacteria 3017
60 Ga0395905_0207872 3300037471 Bacteria 1834
61 Ga0395901_0161175 3300038443 Bacteria 2356
62 Ga0466972_0000967 3300044658 Bacteria 13826
63 Ga0466966_0189402 3300044684 Bacteria 1247
64 Ga0466970_0037410 3300044765 Bacteria 2572
65 Ga0466959_0052301 3300045049 Bacteria 2992
66 Ga0495590_0004551 3300046457 Bacteria 5588
67 Ga0495628_0037338 3300046516 Bacteria 3895
68 Ga0495643_0001776 3300046522 Bacteria 18512
69 Ga0495648_0010887 3300046524 Bacteria 6898
70 Ga0495645_0080345 3300046543 Bacteria 2341
71 Ga0495668_0056215 3300046616 Bacteria 2172
72 Ga0495661_0002913 3300046665 Bacteria 12955
73 Ga0495671_0023248 3300046692 Bacteria 3240
74 Ga0495649_0045059 3300046694 Bacteria 2406
75 Ga0495649_0052995 3300046694 Bacteria 2197
76 Ga0495674_0040006 3300047319 Bacteria 4197
77 Ga0495676_0066446 3300047321 Bacteria 2795
78 Ga0495687_004633 3300047443 Bacteria 9176
79 Ga0495687_005417 3300047443 Bacteria 8142
80 Ga0495687_013974 3300047443 Bacteria 4155
81 Ga0495687_015025 3300047443 Bacteria 3953
82 Ga0496108_0013170 3300048911 Bacteria 6741
83 Ga0496114_0304576 3300048917 Bacteria 1407
84 Ga0495682_0000387 3300049460 Bacteria 31818
85 Ga0501031_0001054 3300049568 Bacteria 16719
86 Ga0501031_0141839 3300049568 Bacteria 1570
87 Ga0501032_0004673 3300049569 Bacteria 10276
88 Ga0501033_0001880 3300049570 Bacteria 18269
89 Ga0501033_0003595 3300049570 Bacteria 12669
90 Ga0501034_0001385 3300049571 Bacteria 32621
91 Ga0501036_0000487 3300049572 Bacteria 28375
92 Ga0501036_0004077 3300049572 Bacteria 11751
93 Ga0501037_0006159 3300049573 Bacteria 8764
94 Ga0501038_0008558 3300049574 Bacteria 9395
95 Ga0501038_0017986 3300049574 Bacteria 6384
96 Ga0501038_0152426 3300049574 Bacteria 1884
97 Ga0501039_0002878 3300049575 Bacteria 12878
98 Ga0501039_0039167 3300049575 Bacteria 3660
99 Ga0501040_0000121 3300049576 Bacteria 41506
100 Ga0501042_0039973 3300049578 Bacteria 3334
101 Ga0501043_0000665 3300049579 Bacteria 30366
102 Ga0501043_0010034 3300049579 Bacteria 7427
103 Ga0501046_0001686 3300049580 Bacteria 21120
104 Ga0501046_0014844 3300049580 Bacteria 6558
105 Ga0501047_0005758 3300049581 Bacteria 11667
106 Ga0501048_0004483 3300049582 Bacteria 10625
107 Ga0501068_0003843 3300049584 Bacteria 8151
108 Ga0501080_0177886 3300049742 Bacteria 1959
109 Ga0501262_000162 3300049759 Bacteria 8223
110 Ga0501280_000961 3300049776 Bacteria 6030
111 Ga0501035_0000462 3300049822 Bacteria 45527
112 Ga0501035_0001288 3300049822 Bacteria 25883
113 Ga0501044_0001318 3300049823 Bacteria 29197
114 Ga0501044_0006002 3300049823 Bacteria 13417
115 Ga0501045_0001916 3300049824 Bacteria 14067
116 nmdc:mga08y16_70945_c1 3300050511 Bacteria 3631
117 Ga0500616_0009636 3300053153 Bacteria 5853
118 Ga0466962_0090589 3300061719 Bacteria 1465

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049568 Ga0501031_0141839 Ga0501031_0141839_110_1204 346
2 iso_pu_bacteria 2919527303 2919533224 374
3 iso_pu_bacteria 2895498888 2895502029 384
4 iso_pu_bacteria 2895511927 2895517018 384
5 iso_pu_bacteria 2895522137 2895524549 384
6 iso_pu_bacteria 2895525241 2895525894 384
7 3300009094 Ga0111539_10016612 Ga0111539_100166123 385
8 3300027907 Ga0207428_10056594 Ga0207428_100565944 385
9 3300050511 nmdc:mga08y16_70945_c1 nmdc:mga08y16_70945_c1_1957_3228 385
10 3300047443 Ga0495687_004633 Ga0495687_004633_5360_6631 386
11 3300025919 Ga0207657_10164992 Ga0207657_101649922 391
12 3300044684 Ga0466966_0189402 Ga0466966_0189402_47_1228 391
13 3300044765 Ga0466970_0037410 Ga0466970_0037410_129_1424 395
14 3300045049 Ga0466959_0052301 Ga0466959_0052301_1442_2746 395
15 3300037418 Ga0395900_0038443 Ga0395900_0038443_19_1209 396
16 3300049570 Ga0501033_0003595 Ga0501033_0003595_3994_5280 399
17 3300049571 Ga0501034_0001385 Ga0501034_0001385_3977_5263 399
18 3300049572 Ga0501036_0000487 Ga0501036_0000487_24440_25726 399
19 3300049573 Ga0501037_0006159 Ga0501037_0006159_3517_4803 399
20 3300049574 Ga0501038_0008558 Ga0501038_0008558_7291_8577 399
21 3300049575 Ga0501039_0002878 Ga0501039_0002878_9832_11118 399
22 3300049576 Ga0501040_0000121 Ga0501040_0000121_3973_5259 399
23 3300049578 Ga0501042_0039973 Ga0501042_0039973_288_1574 399
24 3300049579 Ga0501043_0000665 Ga0501043_0000665_25103_26389 399
25 3300049580 Ga0501046_0001686 Ga0501046_0001686_16820_18106 399
26 3300049581 Ga0501047_0005758 Ga0501047_0005758_6084_7370 399
27 3300049582 Ga0501048_0004483 Ga0501048_0004483_4150_5436 399
28 3300049584 Ga0501068_0003843 Ga0501068_0003843_2409_3695 399
29 3300049822 Ga0501035_0001288 Ga0501035_0001288_1761_3047 399
30 3300049823 Ga0501044_0001318 Ga0501044_0001318_3978_5264 399
31 3300049824 Ga0501045_0001916 Ga0501045_0001916_1761_3047 399
32 3300037471 Ga0395905_0005195 Ga0395905_0005195_6927_8243 401
33 3300048911 Ga0496108_0013170 Ga0496108_0013170_432_1703 403
34 3300005344 Ga0070661_100026375 Ga0070661_1000263751 406
35 3300025920 Ga0207649_10124569 Ga0207649_101245692 406
36 3300046457 Ga0495590_0004551 Ga0495590_0004551_3385_4704 406
37 3300002704 JGI25155J39150_1000531 JGI25155J39150_10005317 407
38 3300002705 JGI25156J39149_1002984 JGI25156J39149_10029846 407
39 3300002738 JGI25154J39366_1000925 JGI25154J39366_100092511 407
40 3300003316 rootH1_10126270 rootH1_101262702 407
41 3300025206 Ga0209435_100096 Ga0209435_10009628 407
42 3300025246 Ga0209646_1000093 Ga0209646_100009319 407
43 3300025250 Ga0209026_1006092 Ga0209026_10060923 407
44 3300025256 Ga0209759_1000248 Ga0209759_100024825 407
45 3300037471 Ga0395905_0082269 Ga0395905_0082269_1611_2870 407
46 iso_pu_bacteria 2928130867 2928133080 409
47 3300003775 Ga0055524_1000022 Ga0055524_1000022197 410
48 3300005344 Ga0070661_100008401 Ga0070661_1000084015 410
49 3300005366 Ga0070659_100003302 Ga0070659_1000033029 410
50 3300005441 Ga0070700_100015203 Ga0070700_1000152036 410
51 3300005548 Ga0070665_100120704 Ga0070665_1001207042 410
52 3300005564 Ga0070664_100014336 Ga0070664_1000143364 410
53 3300005564 Ga0070664_100127939 Ga0070664_1001279392 410
54 3300005718 Ga0068866_10054927 Ga0068866_100549272 410
55 3300006948 Ga0099826_10000006 Ga0099826_10000006211 410
56 3300013308 Ga0157375_10131745 Ga0157375_101317453 410
57 3300025263 Ga0209565_1002551 Ga0209565_10025517 410
58 3300025295 Ga0209564_1010835 Ga0209564_10108353 410
59 3300025299 Ga0209256_1000035 Ga0209256_1000035197 410
60 3300025920 Ga0207649_10009554 Ga0207649_100095544 410
61 3300025932 Ga0207690_10005063 Ga0207690_100050636 410
62 3300025945 Ga0207679_10001331 Ga0207679_100013316 410
63 3300025945 Ga0207679_10040814 Ga0207679_100408144 410
64 3300026075 Ga0207708_10078259 Ga0207708_100782593 410
65 3300026089 Ga0207648_10244945 Ga0207648_102449452 410
66 3300027666 Ga0209282_1000003 Ga0209282_1000003164 410
67 3300027907 Ga0207428_10134507 Ga0207428_101345072 410
68 3300005539 Ga0068853_100312019 Ga0068853_1003120191 412
69 3300037312 Ga0395899_0012960 Ga0395899_0012960_4030_5298 412
70 3300048917 Ga0496114_0304576 Ga0496114_0304576_35_1342 412
71 3300049742 Ga0501080_0177886 Ga0501080_0177886_615_1892 412
72 3300061719 Ga0466962_0090589 Ga0466962_0090589_19_1323 412
73 3300005614 Ga0068856_100224130 Ga0068856_1002241302 413
74 3300037418 Ga0395900_0127521 Ga0395900_0127521_763_2043 413
75 3300038443 Ga0395901_0161175 Ga0395901_0161175_565_1845 413
76 3300049568 Ga0501031_0001054 Ga0501031_0001054_15241_16527 413
77 3300049569 Ga0501032_0004673 Ga0501032_0004673_1179_2465 413
78 3300049570 Ga0501033_0001880 Ga0501033_0001880_4107_5393 413
79 3300049572 Ga0501036_0004077 Ga0501036_0004077_2652_3938 413
80 3300049574 Ga0501038_0017986 Ga0501038_0017986_3923_5209 413
81 3300049574 Ga0501038_0152426 Ga0501038_0152426_22_1332 413
82 3300049575 Ga0501039_0039167 Ga0501039_0039167_949_2235 413
83 3300049579 Ga0501043_0010034 Ga0501043_0010034_2219_3505 413
84 3300049580 Ga0501046_0014844 Ga0501046_0014844_2115_3401 413
85 3300049822 Ga0501035_0000462 Ga0501035_0000462_40243_41529 413
86 3300049823 Ga0501044_0006002 Ga0501044_0006002_9520_10806 413
87 3300037471 Ga0395905_0008422 Ga0395905_0008422_627_1934 414
88 3300046522 Ga0495643_0001776 Ga0495643_0001776_13140_14420 414
89 3300046616 Ga0495668_0056215 Ga0495668_0056215_495_1775 414
90 3300046665 Ga0495661_0002913 Ga0495661_0002913_8445_9725 414
91 3300047443 Ga0495687_005417 Ga0495687_005417_3138_4418 414
92 iso_pu_bacteria 2643221592 2643970497 414
93 iso_pu_bacteria 2643221625 2644142766 414
94 iso_pu_bacteria 2643221648 2644272673 414
95 3300028794 Ga0307515_10086703 Ga0307515_100867033 415
96 3300037471 Ga0395905_0000514 Ga0395905_0000514_50713_51999 416
97 iso_pu_bacteria 2643221585 2643935393 417
98 iso_pu_bacteria 2643221621 2644124176 417
99 iso_pu_bacteria 2643221656 2644317175 417
100 3300046694 Ga0495649_0045059 Ga0495649_0045059_15_1310 418
101 3300053153 Ga0500616_0009636 Ga0500616_0009636_1575_2873 418
102 3300044658 Ga0466972_0000967 Ga0466972_0000967_2121_3419 419
103 3300005457 Ga0070662_100001333 Ga0070662_10000133312 420
104 3300025933 Ga0207706_10001163 Ga0207706_1000116313 420
105 iso_pu_bacteria 2643221603 2644026722 420
106 3300049759 Ga0501262_000162 Ga0501262_000162_5496_6827 421
107 3300037471 Ga0395905_0207872 Ga0395905_0207872_40_1344 422
108 3300003323 rootH1_10018083 rootH1_100180834 424
109 3300046516 Ga0495628_0037338 Ga0495628_0037338_2232_3545 424
110 3300046524 Ga0495648_0010887 Ga0495648_0010887_5061_6368 424
111 3300046543 Ga0495645_0080345 Ga0495645_0080345_115_1422 424
112 3300046692 Ga0495671_0023248 Ga0495671_0023248_1803_3110 424
113 3300046694 Ga0495649_0052995 Ga0495649_0052995_246_1553 424
114 3300047319 Ga0495674_0040006 Ga0495674_0040006_688_2001 424
115 3300047321 Ga0495676_0066446 Ga0495676_0066446_1095_2408 424
116 3300049460 Ga0495682_0000387 Ga0495682_0000387_8619_9926 424
117 3300049776 Ga0501280_000961 Ga0501280_000961_1765_3072 425
118 iso_pu_bacteria 2834641062 2834642448 426
119 iso_pu_bacteria 8003400568 8003403434 426
120 3300031911 Ga0307412_10023136 Ga0307412_100231365 427
121 3300030745 Ga0316182_1084939 Ga0316182_10849392 428
122 iso_pu_bacteria 2954767861 2954772841 428
123 3300047443 Ga0495687_015025 Ga0495687_015025_1619_2947 431
124 iso_pu_bacteria 8055301274 8055308586 433
125 3300047443 Ga0495687_013974 Ga0495687_013974_2261_3637 435
126 iso_pu_bacteria 8055266321 8055266792 436
127 iso_pu_bacteria 2508501125 2509129297 437
128 iso_pu_bacteria 2513237151 2513962551 437
129 iso_pu_bacteria 2526164713 2527079284 437
130 3300027312 Ga0209371_1005904 Ga0209371_10059043 439
131 3300030500 Ga0268256_1007711 Ga0268256_10077113 439
132 iso_pu_bacteria 2738541296 2738820206 440
133 iso_pu_bacteria 2738541298 2738832686 440
134 iso_pu_bacteria 2738541306 2738874213 440
135 iso_pu_bacteria 2738543002 2739185843 440
136 iso_pu_bacteria 2738543008 2739220811 440
137 iso_pu_bacteria 641736151 642422273 440
138 3300003756 Ga0055533_1001532 Ga0055533_10015326 441
139 3300025226 Ga0209674_100290 Ga0209674_1002906 441
140 3300025256 Ga0209759_1000053 Ga0209759_1000053184 441
141 3300001989 JGI24739J22299_10015763 JGI24739J22299_100157634 444
142 3300014497 Ga0182008_10013279 Ga0182008_100132796 444
143 3300025904 Ga0207647_10006184 Ga0207647_100061843 444
144 3300031911 Ga0307412_10000014 Ga0307412_1000001479 444
145 iso_pu_bacteria 2945934425 2945935333 444
146 iso_pu_bacteria 2990703756 2990704118 444

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13781

DoxX_3

DoxX-like family

310

415

0.95

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

1

193

0.82

PF05368

NmrA

NmrA-like family

1

135

0.82

PF13460

NAD_binding_10

NAD(P)H-binding

1

147

0.71

Structural Annotation

Top 5 Hits

ID Description Score Start End
7r48-assembly1.cif.gz_P bovine complex i in the presence of im1761092, deactive class iv (composite map) 0.8572 1 289
7r41-assembly1.cif.gz_P bovine complex i in the presence of im1761092, active class i (composite map) 0.8564 1 289
6qc2-assembly1.cif.gz_A9 ovine respiratory supercomplex i+iii2 open class 2 0.8537 1 229
7w35-assembly1.cif.gz_J deactive state ci from dq-nadh dataset, subclass 3 0.8528 1 305
7zeb-assembly1.cif.gz_d complex i from ovis aries at ph9, closed state 0.8514 1 289
ID Description Score Start End Superfamily
af_A0A2R8RUA9_55_239_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8943 1 152 3.40.50.720
af_Q9DC69_47_264_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8765 1 189 3.40.50.720
af_Q9N3H3_46_282_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8457 1 179 3.40.50.720
af_Q9SK66_71_329_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8405 1 253 3.40.50.720
af_Q54U38_35_262_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.837 16 186 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A7C3H6V2-F1-model_v4 SDR family NAD(P)-dependent oxidoreductase 0.9627 1 142 GO:0044877
GO:1901006
AF-A0A1B2R3D0-F1-model_v4 NAD-dependent epimerase/dehydratase domain-containing protein 0.9544 1 427 GO:0016020
GO:0044877
GO:1901006
AF-A0A656QM46-F1-model_v4 Epimerase 0.953 1 431 GO:0016020
GO:0044877
GO:1901006
AF-A0A6J5GPZ2-F1-model_v4 NAD(P)-binding domain-containing protein 0.9527 37 431 GO:0016020
GO:0044877
GO:1901006
AF-Q3SHK0-F1-model_v4 NAD-dependent epimerase/dehydratase domain-containing protein 0.9513 1 427 GO:0016020
GO:0044877
GO:1901006

Feature Viewer

pLDDT pTM Quality
85.53 0.82 High
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Predicted Structure (AlphaFold2)

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