F198854
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 146 | 104 | 293 | 290 |
Family's Representative Sequence
| Representative Sequence | 3300053090|Ga0500646_0023367|Ga0500646_0023367_328_1275 |
| Length | 315 |
| Sequence | LWDCKSSKFSIFAKSISSIYLFTMNERIAESELILNSRGAVYHLDVRPEELAGTIITVGDPDRVPEVSKHFNRLESTHQHREFVTHTGSIGQKRITVVSTGIGTDNIDIVLNELDALSNIDFATRTIKPALTSLKIIRLGTSGALQEQVPVDSFVVSSHGLGLDNLMPWYRFENTPEEKALLSAFREQVFLQPGTASPSLFSAAKTLAAKFTTGFHTGITVTCPGFYAPQGRALRGPLSHPQLLEQLTAFRHEPHYISNFEMETSGIYGLGRVLGHDCLSISAIVANRVRQEFSRDGAKAVDNLIKTSLEIIEKL |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300053090 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere | Metagenome | Endosphere |
| 2 | 3300002738 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA | Metagenome | Unclassified |
| 3 | 3300003215 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF | Metagenome | Endosphere |
| 4 | 3300003316 | Sugarcane root Sample L1 | Metagenome | Unclassified |
| 5 | 3300003320 | Sugarcane root Sample H2 | Metagenome | Unclassified |
| 6 | 3300003322 | Sugarcane root Sample L2 | Metagenome | Unclassified |
| 7 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 8 | 3300003354 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS | Metagenome | Endosphere |
| 9 | 3300003762 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 | Metagenome | Endosphere |
| 10 | 3300003790 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 | Metagenome | Endosphere |
| 11 | 3300003794 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 | Metagenome | Endosphere |
| 12 | 3300005262 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) | Metagenome | Endosphere |
| 13 | 3300005289 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) | Metagenome | Rhizosphere |
| 14 | 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Metagenome | Rhizosphere |
| 15 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 16 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 17 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 18 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 19 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 20 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 21 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 22 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 23 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 24 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 25 | 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Metagenome | Rhizosphere |
| 26 | 3300015265 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG | Metagenome | Rhizosphere |
| 27 | 3300025208 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) | Metagenome | Endosphere |
| 28 | 3300025242 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 29 | 3300025246 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) | Metagenome | Unclassified |
| 30 | 3300025254 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 31 | 3300025273 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 32 | 3300025284 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) | Metagenome | Endosphere |
| 33 | 3300025295 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 34 | 3300025297 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) | Metagenome | Endosphere |
| 35 | 3300025298 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 36 | 3300025302 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 37 | 3300025303 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 38 | 3300025304 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 39 | 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 40 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 42 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 43 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300025981 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 45 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 46 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 47 | 3300028577 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG | Metagenome | Rhizosphere |
| 48 | 3300028794 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM | Metagenome | Unclassified |
| 49 | 3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Metagenome | Rhizosphere |
| 50 | 3300031456 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM | Metagenome | Unclassified |
| 51 | 3300031507 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM | Metagenome | Unclassified |
| 52 | 3300031711 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG | Metagenome | Rhizosphere |
| 53 | 3300031731 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 | Metagenome | Rhizosphere |
| 54 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 55 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 56 | 3300032126 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 | Metagenome | Rhizosphere |
| 57 | 3300033180 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM | Metagenome | Unclassified |
| 58 | 3300035695 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 | Metagenome | Rhizosphere |
| 59 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 60 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 61 | 3300041997 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 | Metagenome | Rhizosphere |
| 62 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 63 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 64 | 3300044735 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R | Metagenome | Rhizosphere |
| 65 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 66 | 3300046460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere | Metagenome | Rhizosphere |
| 67 | 3300048904 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled | Metagenome | Rhizoplane |
| 68 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 69 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 70 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 71 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 72 | 3300049576 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 73 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 74 | 3300049686 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control | Metagenome | Rhizosphere |
| 75 | 3300049758 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought | Metagenome | Rhizosphere |
| 76 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 77 | 3300053088 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere | Metagenome | Endosphere |
| 78 | 3300053100 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 endosphere | Metagenome | Endosphere |
| 79 | 3300053109 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere | Metagenome | Endosphere |
| 80 | 3300053118 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere | Metagenome | Endosphere |
| 81 | 3300053131 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere | Metagenome | Endosphere |
| 82 | 3300053136 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere | Metagenome | Endosphere |
| 83 | 3300053142 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere | Metagenome | Endosphere |
| 84 | 3300053153 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere | Metagenome | Endosphere |
| 85 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 86 | 3300053157 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere | Metagenome | Endosphere |
| 87 | 3300053160 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere | Metagenome | Endosphere |
| 88 | 3300055283 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere | Metagenome | Endosphere |
| 89 | 2818991442 | Chitinophaga pinensis 1204 | Isolate | Unclassified |
| 90 | 2818991460 | Chitinophaga polysaccharea 1209 | Isolate | Unclassified |
| 91 | 2821136567 | Chitinophaga sancti 1232 | Isolate | Unclassified |
| 92 | 2839989709 | Pontibacter arcticus 2b14 | Isolate | Unclassified |
| 93 | 2883068021 | Chitinophaga rhizosphaerae T16R-86 | Isolate | Rhizosphere |
| 94 | 2884791551 | Chitinophaga oryzae 1310 | Isolate | Unclassified |
| 95 | 2896085136 | Chitinophaga alhagiae T22 | Isolate | Unclassified |
| 96 | 2896109856 | Chitinophaga sp. SYP-B3965 | Isolate | Rhizosphere |
| 97 | 2904467357 | Chitinophaga sancti 3198 | Isolate | Unclassified |
| 98 | 2910245624 | Adhaeribacter radiodurans KUDC8001 | Isolate | Rhizosphere |
| 99 | 2929177148 | Chitinophaga sp. R-72269 Hybrid assembly | Isolate | Unclassified |
| 100 | 2929239360 | Chitinophaga sp. R-73072 Hybrid assembly | Isolate | Unclassified |
| 101 | 2929921140 | Chitinophaga sp. R-72609 Hybrid assembly | Isolate | Unclassified |
| 102 | 2945977869 | Chitinophaga sp. W2I13 | Isolate | Rhizosphere |
| 103 | 2946013367 | Chitinophaga sp. W3I9 | Isolate | Rhizosphere |
| 104 | 8003151029 | Chitinophaga sp. GbtcB8 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 89.04 |
| Metatranscriptomes | 0 |
| Isolates | 10.96 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 30.14 |
| Nodule | 0 |
| Rhizoplane | 0.68 |
| Rhizosphere | 43.84 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 4.11 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0500646_0023367 | 3300053090 | Bacteria | 1658 |
| 2 | JGI25154J39366_1000179 | 3300002738 | Bacteria | 49600 |
| 3 | JGI25153J46596_10002672 | 3300003215 | Bacteria | 10181 |
| 4 | rootH1_10027364 | 3300003316 | Bacteria | 3557 |
| 5 | rootH2_10095808 | 3300003320 | Bacteria | 2522 |
| 6 | rootH2_10106846 | 3300003320 | Bacteria | 1142 |
| 7 | rootH2_10147775 | 3300003320 | Bacteria | 2847 |
| 8 | rootH2_10244385 | 3300003320 | Bacteria | 1801 |
| 9 | rootL2_10009254 | 3300003322 | Bacteria | 12818 |
| 10 | rootL2_10011374 | 3300003322 | Unclassified | 1727 |
| 11 | rootL2_10012176 | 3300003322 | Bacteria | 4483 |
| 12 | rootL2_10052872 | 3300003322 | Bacteria | 5538 |
| 13 | rootL2_10154561 | 3300003322 | Bacteria | 4558 |
| 14 | rootL2_10290267 | 3300003322 | Unclassified | 1303 |
| 15 | rootH1_10015499 | 3300003323 | Bacteria | 86587 |
| 16 | rootH1_10025408 | 3300003323 | Bacteria | 13978 |
| 17 | rootH1_10067128 | 3300003316 | Bacteria | 6028 |
| 18 | rootH1_10067128 | 3300003323 | Bacteria | 1844 |
| 19 | rootH1_10090644 | 3300003323 | Bacteria | 5821 |
| 20 | rootH1_10219213 | 3300003323 | Bacteria | 2691 |
| 21 | JGI25160J50197_1003411 | 3300003354 | Bacteria | 7115 |
| 22 | JGI25160J50197_1006969 | 3300003354 | Bacteria | 4489 |
| 23 | JGI25160J50197_1020165 | 3300003354 | Bacteria | 2021 |
| 24 | Ga0055542_1002208 | 3300003762 | Bacteria | 6898 |
| 25 | Ga0055528_1003675 | 3300003790 | Bacteria | 7610 |
| 26 | Ga0055528_1008606 | 3300003790 | Bacteria | 4347 |
| 27 | Ga0055531_10000122 | 3300003794 | Bacteria | 86804 |
| 28 | Ga0055531_10000148 | 3300003794 | Bacteria | 80963 |
| 29 | Ga0065165_1005138 | 3300005262 | Bacteria | 7575 |
| 30 | Ga0065165_1016130 | 3300005262 | Bacteria | 2812 |
| 31 | Ga0065165_1016513 | 3300005262 | Bacteria | 2761 |
| 32 | Ga0065704_10090788 | 3300005289 | Bacteria | 2760 |
| 33 | Ga0070671_100073402 | 3300005355 | Bacteria | 2858 |
| 34 | Ga0068855_100037567 | 3300005563 | Bacteria | 5758 |
| 35 | Ga0068855_100099604 | 3300005563 | Unclassified | 3347 |
| 36 | Ga0068855_100248774 | 3300005563 | Bacteria | 1983 |
| 37 | Ga0068857_100032134 | 3300005577 | Bacteria | 4640 |
| 38 | Ga0068857_100032174 | 3300005577 | Bacteria | 4637 |
| 39 | Ga0068856_100041159 | 3300005614 | Bacteria | 4539 |
| 40 | Ga0068856_100111322 | 3300005614 | Bacteria | 2735 |
| 41 | Ga0068852_100258420 | 3300005616 | Bacteria | 1671 |
| 42 | Ga0068864_100168993 | 3300005618 | Unclassified | 1993 |
| 43 | Ga0105240_10075259 | 3300009093 | Bacteria | 4164 |
| 44 | Ga0105240_10257303 | 3300009093 | Bacteria | 2016 |
| 45 | Ga0105239_10077890 | 3300010375 | Bacteria | 3648 |
| 46 | Ga0157370_10002349 | 3300013104 | Bacteria | 22855 |
| 47 | Ga0157370_10015067 | 3300013104 | Bacteria | 7877 |
| 48 | Ga0157374_10000003 | 3300013296 | Bacteria | 854471 |
| 49 | Ga0157372_10002614 | 3300013307 | Bacteria | 19487 |
| 50 | Ga0157376_10015529 | 3300014969 | Bacteria | 5755 |
| 51 | Ga0182005_1000172 | 3300015265 | Bacteria | 44748 |
| 52 | Ga0209436_100750 | 3300025208 | Bacteria | 13444 |
| 53 | Ga0209258_100274 | 3300025242 | Bacteria | 87617 |
| 54 | Ga0209646_1000037 | 3300025246 | Bacteria | 355116 |
| 55 | Ga0209148_1000254 | 3300025254 | Bacteria | 84261 |
| 56 | Ga0209673_1000130 | 3300025273 | Bacteria | 163870 |
| 57 | Ga0209130_1002095 | 3300025284 | Bacteria | 10683 |
| 58 | Ga0209564_1019662 | 3300025295 | Bacteria | 2513 |
| 59 | Ga0209564_1029912 | 3300025295 | Bacteria | 1700 |
| 60 | Ga0209758_1005495 | 3300025297 | Bacteria | 9712 |
| 61 | Ga0209758_1015487 | 3300025297 | Bacteria | 3941 |
| 62 | Ga0209050_1000427 | 3300025298 | Bacteria | 77517 |
| 63 | Ga0209050_1020348 | 3300025298 | Bacteria | 2473 |
| 64 | Ga0207426_1000134 | 3300025302 | Bacteria | 202226 |
| 65 | Ga0207426_1001093 | 3300025302 | Bacteria | 25077 |
| 66 | Ga0207426_1007285 | 3300025302 | Bacteria | 4653 |
| 67 | Ga0209051_1023984 | 3300025303 | Bacteria | 2523 |
| 68 | Ga0209257_1000006 | 3300025304 | Bacteria | 1570111 |
| 69 | Ga0209257_1000008 | 3300025304 | Bacteria | 1294570 |
| 70 | Ga0209257_1002828 | 3300025304 | Bacteria | 16296 |
| 71 | Ga0207647_10021658 | 3300025904 | Bacteria | 4287 |
| 72 | Ga0207705_10090167 | 3300025909 | Bacteria | 2244 |
| 73 | Ga0207660_10017574 | 3300025917 | Bacteria | 4754 |
| 74 | Ga0207657_10143342 | 3300025919 | Bacteria | 1951 |
| 75 | Ga0207667_10002067 | 3300025949 | Bacteria | 25161 |
| 76 | Ga0207667_10388408 | 3300025949 | Bacteria | 1422 |
| 77 | Ga0207640_10065811 | 3300025981 | Bacteria | 2419 |
| 78 | Ga0207674_10011727 | 3300026116 | Bacteria | 9836 |
| 79 | Ga0207674_10117557 | 3300026116 | Bacteria | 2629 |
| 80 | Ga0207698_10109069 | 3300026142 | Bacteria | 2315 |
| 81 | Ga0265318_10043381 | 3300028577 | Bacteria | 1704 |
| 82 | Ga0307515_10000009 | 3300028794 | Bacteria | 653206 |
| 83 | Ga0307515_10112257 | 3300028794 | Bacteria | 3172 |
| 84 | Ga0265338_10002313 | 3300028800 | Bacteria | 28896 |
| 85 | Ga0265338_10199287 | 3300028800 | Bacteria | 1511 |
| 86 | Ga0307513_10138725 | 3300031456 | Bacteria | 2362 |
| 87 | Ga0307509_10050004 | 3300031507 | Bacteria | 4478 |
| 88 | Ga0307509_10113247 | 3300031507 | Bacteria | 2711 |
| 89 | Ga0265314_10011466 | 3300031711 | Bacteria | 7315 |
| 90 | Ga0307405_10191506 | 3300031731 | Unclassified | 1477 |
| 91 | Ga0307416_100022759 | 3300032002 | Bacteria | 4532 |
| 92 | Ga0307414_10033799 | 3300032004 | Bacteria | 3383 |
| 93 | Ga0307414_10035997 | 3300032004 | Bacteria | 3299 |
| 94 | Ga0307415_100014788 | 3300032126 | Bacteria | 4601 |
| 95 | Ga0307510_10105043 | 3300033180 | Bacteria | 2595 |
| 96 | Ga0373927_0005120 | 3300035695 | Bacteria | 9074 |
| 97 | Ga0395900_0121367 | 3300037418 | Bacteria | 2681 |
| 98 | Ga0395900_0130037 | 3300037418 | Bacteria | 2581 |
| 99 | Ga0395898_0291996 | 3300037466 | Bacteria | 1555 |
| 100 | Ga0439431_0000028 | 3300041997 | Bacteria | 22554 |
| 101 | Ga0451577_0095082 | 3300042876 | Bacteria | 2661 |
| 102 | Ga0451577_0279540 | 3300042876 | Bacteria | 1512 |
| 103 | Ga0453684_0039981 | 3300044712 | Bacteria | 6378 |
| 104 | Ga0453684_0143524 | 3300044712 | Bacteria | 2847 |
| 105 | Ga0466968_0166949 | 3300044735 | Bacteria | 1018 |
| 106 | Ga0466959_0006121 | 3300045049 | Bacteria | 8313 |
| 107 | Ga0495638_0000197 | 3300046460 | Bacteria | 86853 |
| 108 | Ga0496101_0203296 | 3300048904 | Bacteria | 1532 |
| 109 | Ga0496121_0000026 | 3300048924 | Bacteria | 450157 |
| 110 | Ga0496126_0005164 | 3300048929 | Bacteria | 15097 |
| 111 | Ga0501034_0082474 | 3300049571 | Bacteria | 3217 |
| 112 | Ga0501034_0213189 | 3300049571 | Bacteria | 1886 |
| 113 | Ga0501038_0441656 | 3300049574 | Bacteria | 1002 |
| 114 | Ga0501040_0190390 | 3300049576 | Bacteria | 1455 |
| 115 | Ga0501047_0014683 | 3300049581 | Bacteria | 7453 |
| 116 | Ga0501257_000509 | 3300049686 | Bacteria | 7733 |
| 117 | Ga0501241_000368 | 3300049758 | Bacteria | 9926 |
| 118 | Ga0501044_0180106 | 3300049823 | Bacteria | 2081 |
| 119 | Ga0500644_0000167 | 3300053088 | Bacteria | 41835 |
| 120 | Ga0500660_103690 | 3300053100 | Bacteria | 1233 |
| 121 | Ga0500569_000509 | 3300053109 | Bacteria | 6473 |
| 122 | Ga0500594_0046813 | 3300053118 | Bacteria | 1204 |
| 123 | Ga0500652_059160 | 3300053131 | Bacteria | 1575 |
| 124 | Ga0500559_0004461 | 3300053136 | Bacteria | 6640 |
| 125 | Ga0500577_0012879 | 3300053142 | Bacteria | 2540 |
| 126 | Ga0500616_0000051 | 3300053153 | Bacteria | 296240 |
| 127 | Ga0500616_0012254 | 3300053153 | Bacteria | 5019 |
| 128 | Ga0500622_0000072 | 3300053156 | Bacteria | 112062 |
| 129 | Ga0500624_005134 | 3300053157 | Unclassified | 1735 |
| 130 | Ga0500633_0037814 | 3300053160 | Bacteria | 1604 |
| 131 | Ga0500661_002506 | 3300055283 | Bacteria | 3466 |
| 132 | 2819577708 | 2818991442 | Bacteria | 8318214 |
| 133 | 2819679812 | 2818991460 | Bacteria | 7595395 |
| 134 | 2821138800 | 2821136567 | Bacteria | 8080116 |
| 135 | 2839992046 | 2839989709 | Bacteria | 3773432 |
| 136 | 2883072097 | 2883068021 | Bacteria | 6192739 |
| 137 | 2884794371 | 2884791551 | Bacteria | 8511252 |
| 138 | 2896089269 | 2896085136 | Bacteria | 6129793 |
| 139 | 2896111295 | 2896109856 | Bacteria | 7140722 |
| 140 | 2904472619 | 2904467357 | Bacteria | 8057758 |
| 141 | 2910249526 | 2910245624 | Bacteria | 6935613 |
| 142 | 2929180075 | 2929177148 | Bacteria | 7883697 |
| 143 | 2929243935 | 2929239360 | Bacteria | 7745570 |
| 144 | 2929925941 | 2929921140 | Bacteria | 8649150 |
| 145 | 2945982502 | 2945977869 | Bacteria | 7777518 |
| 146 | 2946018113 | 2946013367 | Bacteria | 7766675 |
| 147 | 8003153101 | 8003151029 | Bacteria | 8187759 |
| 148 | Ga0500646_0023367 | |||
| 149 | JGI25154J39366_1000179 | |||
| 150 | JGI25153J46596_10002672 | |||
| 151 | rootH1_10027364 | |||
| 152 | rootH2_10095808 | |||
| 153 | rootH2_10106846 | |||
| 154 | rootH2_10147775 | |||
| 155 | rootH2_10244385 | |||
| 156 | rootL2_10009254 | |||
| 157 | rootL2_10011374 | |||
| 158 | rootL2_10012176 | |||
| 159 | rootL2_10052872 | |||
| 160 | rootL2_10154561 | |||
| 161 | rootL2_10290267 | |||
| 162 | rootH1_10015499 | |||
| 163 | rootH1_10025408 | |||
| 164 | rootH1_10067128 | |||
| 165 | rootH1_10090644 | |||
| 166 | rootH1_10219213 | |||
| 167 | JGI25160J50197_1003411 | |||
| 168 | JGI25160J50197_1006969 | |||
| 169 | JGI25160J50197_1020165 | |||
| 170 | Ga0055542_1002208 | |||
| 171 | Ga0055528_1003675 | |||
| 172 | Ga0055528_1008606 | |||
| 173 | Ga0055531_10000122 | |||
| 174 | Ga0055531_10000148 | |||
| 175 | Ga0065165_1005138 | |||
| 176 | Ga0065165_1016130 | |||
| 177 | Ga0065165_1016513 | |||
| 178 | Ga0065704_10090788 | |||
| 179 | Ga0070671_100073402 | |||
| 180 | Ga0068855_100037567 | |||
| 181 | Ga0068855_100099604 | |||
| 182 | Ga0068855_100248774 | |||
| 183 | Ga0068857_100032134 | |||
| 184 | Ga0068857_100032174 | |||
| 185 | Ga0068856_100041159 | |||
| 186 | Ga0068856_100111322 | |||
| 187 | Ga0068852_100258420 | |||
| 188 | Ga0068864_100168993 | |||
| 189 | Ga0105240_10075259 | |||
| 190 | Ga0105240_10257303 | |||
| 191 | Ga0105239_10077890 | |||
| 192 | Ga0157370_10002349 | |||
| 193 | Ga0157370_10015067 | |||
| 194 | Ga0157374_10000003 | |||
| 195 | Ga0157372_10002614 | |||
| 196 | Ga0157376_10015529 | |||
| 197 | Ga0182005_1000172 | |||
| 198 | Ga0209436_100750 | |||
| 199 | Ga0209258_100274 | |||
| 200 | Ga0209646_1000037 | |||
| 201 | Ga0209148_1000254 | |||
| 202 | Ga0209673_1000130 | |||
| 203 | Ga0209130_1002095 | |||
| 204 | Ga0209564_1019662 | |||
| 205 | Ga0209564_1029912 | |||
| 206 | Ga0209758_1005495 | |||
| 207 | Ga0209758_1015487 | |||
| 208 | Ga0209050_1000427 | |||
| 209 | Ga0209050_1020348 | |||
| 210 | Ga0207426_1000134 | |||
| 211 | Ga0207426_1001093 | |||
| 212 | Ga0207426_1007285 | |||
| 213 | Ga0209051_1023984 | |||
| 214 | Ga0209257_1000006 | |||
| 215 | Ga0209257_1000008 | |||
| 216 | Ga0209257_1002828 | |||
| 217 | Ga0207647_10021658 | |||
| 218 | Ga0207705_10090167 | |||
| 219 | Ga0207660_10017574 | |||
| 220 | Ga0207657_10143342 | |||
| 221 | Ga0207667_10002067 | |||
| 222 | Ga0207667_10388408 | |||
| 223 | Ga0207640_10065811 | |||
| 224 | Ga0207674_10011727 | |||
| 225 | Ga0207674_10117557 | |||
| 226 | Ga0207698_10109069 | |||
| 227 | Ga0265318_10043381 | |||
| 228 | Ga0307515_10000009 | |||
| 229 | Ga0307515_10112257 | |||
| 230 | Ga0265338_10002313 | |||
| 231 | Ga0265338_10199287 | |||
| 232 | Ga0307513_10138725 | |||
| 233 | Ga0307509_10050004 | |||
| 234 | Ga0307509_10113247 | |||
| 235 | Ga0265314_10011466 | |||
| 236 | Ga0307405_10191506 | |||
| 237 | Ga0307416_100022759 | |||
| 238 | Ga0307414_10033799 | |||
| 239 | Ga0307414_10035997 | |||
| 240 | Ga0307415_100014788 | |||
| 241 | Ga0307510_10105043 | |||
| 242 | Ga0373927_0005120 | |||
| 243 | Ga0395900_0121367 | |||
| 244 | Ga0395900_0130037 | |||
| 245 | Ga0395898_0291996 | |||
| 246 | Ga0439431_0000028 | |||
| 247 | Ga0451577_0095082 | |||
| 248 | Ga0451577_0279540 | |||
| 249 | Ga0453684_0039981 | |||
| 250 | Ga0453684_0143524 | |||
| 251 | Ga0466968_0166949 | |||
| 252 | Ga0466959_0006121 | |||
| 253 | Ga0495638_0000197 | |||
| 254 | Ga0496101_0203296 | |||
| 255 | Ga0496121_0000026 | |||
| 256 | Ga0496126_0005164 | |||
| 257 | Ga0501034_0082474 | |||
| 258 | Ga0501034_0213189 | |||
| 259 | Ga0501038_0441656 | |||
| 260 | Ga0501040_0190390 | |||
| 261 | Ga0501047_0014683 | |||
| 262 | Ga0501257_000509 | |||
| 263 | Ga0501241_000368 | |||
| 264 | Ga0501044_0180106 | |||
| 265 | Ga0500644_0000167 | |||
| 266 | Ga0500660_103690 | |||
| 267 | Ga0500569_000509 | |||
| 268 | Ga0500594_0046813 | |||
| 269 | Ga0500652_059160 | |||
| 270 | Ga0500559_0004461 | |||
| 271 | Ga0500577_0012879 | |||
| 272 | Ga0500616_0000051 | |||
| 273 | Ga0500616_0012254 | |||
| 274 | Ga0500622_0000072 | |||
| 275 | Ga0500624_005134 | |||
| 276 | Ga0500633_0037814 | |||
| 277 | Ga0500661_002506 | |||
| 278 | 2819577708 | |||
| 279 | 2819679812 | |||
| 280 | 2821138800 | |||
| 281 | 2839992046 | |||
| 282 | 2883072097 | |||
| 283 | 2884794371 | |||
| 284 | 2896089269 | |||
| 285 | 2896111295 | |||
| 286 | 2904472619 | |||
| 287 | 2910249526 | |||
| 288 | 2929180075 | |||
| 289 | 2929243935 | |||
| 290 | 2929925941 | |||
| 291 | 2945982502 | |||
| 292 | 2946018113 | |||
| 293 | 8003153101 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 3bje-assembly1.cif.gz_B | crystal structure of trypanosoma brucei nucleoside phosphorylase shows uridine phosphorylase activity | 0.8801 | 10 | 292 |
| 3bje-assembly1.cif.gz_B | crystal structure of trypanosoma brucei nucleoside phosphorylase shows uridine phosphorylase activity | 0.8489 | 10 | 292 |
| 1vhw-assembly1.cif.gz_F | crystal structure of purine nucleoside phosphorylase with adenosine | 0.8421 | 17 | 289 |
| 4m7w-assembly1.cif.gz_A | crystal structure of purine nucleoside phosphorylase from leptotrichia buccalis c-1013-b, nysgrc target 029767. | 0.8343 | 17 | 292 |
| 1vhw-assembly1.cif.gz_B | crystal structure of purine nucleoside phosphorylase with adenosine | 0.8265 | 17 | 289 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_A4HUL2_31_341_3.40.50.1580 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nucleoside phosphorylase domain | 0.8829 | 26 | 293 | 3.40.50.1580 |
| af_Q4DAD9_30_266_3.40.50.1580 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nucleoside phosphorylase domain | 0.851 | 24 | 221 | 3.40.50.1580 |
| af_Q23280_2_119_2.60.40.790 | Mainly Beta;Sandwich;Immunoglobulin-like; | 0.8241 | 50 | 75 | 2.60.40.790 |
| af_E7FBQ4_1_245_3.30.460.90 | Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2; | 0.8157 | 50 | 76 | 3.30.460.90 |
| af_A4HUL2_31_341_3.40.50.1580 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nucleoside phosphorylase domain | 0.8094 | 26 | 293 | 3.40.50.1580 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A520C712-F1-model_v4 | Uridine phosphorylase (EC 2.4.2.3) | 0.9923 | 3 | 119 |
GO:0004731
GO:0005829 GO:0006152 |
| AF-K1RF21-F1-model_v4 | Purine nucleoside phosphorylase II | 0.9909 | 3 | 128 |
GO:0004731
GO:0005829 GO:0006152 |
| AF-A0A4Q3EL50-F1-model_v4 | Uridine phosphorylase (EC 2.4.2.3) | 0.9904 | 3 | 111 |
GO:0003824
GO:0005829 GO:0009116 |
| AF-J9GF59-F1-model_v4 | Purine or other phosphorylase family 1 | 0.9901 | 1 | 118 |
GO:0004731
GO:0005829 GO:0006152 |
| AF-A0A7C5NYS2-F1-model_v4 | Uridine phosphorylase (EC 2.4.2.3) | 0.9845 | 3 | 124 |
GO:0004731
GO:0005829 GO:0006152 |