F198348

General Info

Members Datasets Scaffolds Average Seq Length
146 74 292 124

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0178983|Ga0453684_0178983_144_596
Length 150
Sequence VKSAIRSGFVTAVFSVNTIFNFEEEEMGLNRNVSLATGLRYKGKGPMLTFVLHRIGGLGMAIFVTMHLLASFLGGSIGQNLNGIYEHWLFQIFIFFCALFHAINGLRITILDLWPKLIEYQREAIWVEWAVFIPVYGIAVLVILSTALGG

Samples

Sample ID Description Type Environment
1 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
8 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
9 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
12 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
13 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
14 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
15 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
16 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
17 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
18 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
19 3300006194 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 Metagenome Rhizosphere
20 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
21 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
22 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
23 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
24 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
25 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
26 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
27 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
30 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
36 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
37 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
38 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
39 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
40 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
41 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
42 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
43 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
44 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
45 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
46 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
47 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
48 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
49 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
50 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
51 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
52 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
53 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
54 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
55 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
56 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
57 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
58 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
59 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
60 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
61 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
62 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
63 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
64 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
65 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
66 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
67 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
68 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
69 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
70 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
71 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
72 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
73 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
74 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.68
Nodule 0
Rhizoplane 2.74
Rhizosphere 95.21
Stem 0
Stem Tuber 0
Unclassified 25.34

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0453684_0178983 3300044712 Unclassified 2491
2 JGI25406J46586_10005276 3300003203 Bacteria 5997
3 Ga0065704_10016991 3300005289 Unclassified 1304
4 Ga0065704_10108390 3300005289 Bacteria 2026
5 Ga0065704_10304184 3300005289 Unclassified 878
6 Ga0065707_10008607 3300005295 Bacteria 2147
7 Ga0065707_10087290 3300005295 Bacteria 5089
8 Ga0065707_10199794 3300005295 Bacteria 1316
9 Ga0065707_10620430 3300005295 Unclassified 670
10 Ga0070682_100226853 3300005337 Unclassified 1333
11 Ga0070689_101219518 3300005340 Unclassified 676
12 Ga0070703_10060279 3300005406 Bacteria 1240
13 Ga0070694_100203189 3300005444 Bacteria 1478
14 Ga0070706_100328905 3300005467 Bacteria 1425
15 Ga0070698_100137560 3300005471 Bacteria 2396
16 Ga0070693_100116212 3300005547 Bacteria 1653
17 Ga0070704_100820746 3300005549 Unclassified 832
18 Ga0068857_102484305 3300005577 Unclassified 509
19 Ga0068859_100541388 3300005617 Bacteria 1259
20 Ga0068864_100171427 3300005618 Bacteria 1979
21 Ga0068863_100899496 3300005841 Bacteria 885
22 Ga0068862_100322332 3300005844 Bacteria 1426
23 Ga0081539_10001964 3300005985 Bacteria 31310
24 Ga0075427_10017472 3300006194 Unclassified 1119
25 Ga0075370_10381791 3300006353 Bacteria 844
26 Ga0075428_100398857 3300006844 Bacteria 1474
27 Ga0075430_100048292 3300006846 Bacteria 3594
28 Ga0075431_100026323 3300006847 Bacteria 5967
29 Ga0075434_100251686 3300006871 Bacteria 1786
30 Ga0075429_100039648 3300006880 Bacteria 4099
31 Ga0075429_100817501 3300006880 Bacteria 816
32 Ga0075429_101743866 3300006880 Unclassified 540
33 Ga0075429_101743867 3300006880 Bacteria 540
34 Ga0097620_100541461 3300006931 Bacteria 1259
35 Ga0111539_10103207 3300009094 Bacteria 3346
36 Ga0114129_10135932 3300009147 Bacteria 3373
37 Ga0114129_10419708 3300009147 Bacteria 1760
38 Ga0114129_11156619 3300009147 Bacteria 966
39 Ga0157380_10316243 3300014326 Unclassified 1445
40 Ga0207653_10059997 3300025885 Bacteria 1281
41 Ga0207684_10165602 3300025910 Bacteria 1905
42 Ga0207709_10497177 3300025935 Unclassified 951
43 Ga0207712_10690508 3300025961 Bacteria 890
44 Ga0268265_10623200 3300028380 Unclassified 1034
45 Ga0268265_11249852 3300028380 Unclassified 741
46 Ga0265320_10097134 3300031240 Bacteria 1359
47 Ga0265331_10324622 3300031250 Bacteria 689
48 Ga0316575_10264714 3300031665 Unclassified 723
49 Ga0316579_10016558 3300031691 Bacteria 3223
50 Ga0316579_10024758 3300031691 Bacteria 2705
51 Ga0316579_10156905 3300031691 Bacteria 1099
52 Ga0316579_10183345 3300031691 Unclassified 1012
53 Ga0316579_10252451 3300031691 Bacteria 853
54 Ga0316576_10040415 3300031727 Bacteria 3353
55 Ga0307415_101177648 3300032126 Bacteria 721
56 Ga0316583_10092639 3300032133 Bacteria 1054
57 Ga0316585_10056806 3300032137 Bacteria 1260
58 Ga0316585_10283916 3300032137 Bacteria 549
59 Ga0316580_10201195 3300032139 Unclassified 614
60 Ga0316580_10239796 3300032139 Unclassified 560
61 Ga0316574_0096430 3300035398 Bacteria 1890
62 Ga0316574_0140883 3300035398 Bacteria 1554
63 Ga0316582_0063318 3300036647 Bacteria 2376
64 Ga0316582_0259762 3300036647 Bacteria 1191
65 Ga0316584_0028916 3300036712 Bacteria 4091
66 Ga0316584_0098624 3300036712 Bacteria 2187
67 Ga0316584_0106839 3300036712 Bacteria 2095
68 Ga0316584_0671705 3300036712 Unclassified 712
69 Ga0316581_0006619 3300037588 Bacteria 3075
70 Ga0451789_0998577 3300041443 Bacteria 577
71 Ga0451791_0600331 3300041451 Bacteria 678
72 Ga0451800_1476044 3300041459 Bacteria 612
73 Ga0451849_1564314 3300041505 Bacteria 613
74 Ga0451853_0391457 3300041512 Unclassified 509
75 Ga0439433_0191039 3300041999 Unclassified 539
76 Ga0451577_0001811 3300042876 Bacteria 27348
77 Ga0451577_0003132 3300042876 Bacteria 18649
78 Ga0451577_0031097 3300042876 Bacteria 4819
79 Ga0451577_0068495 3300042876 Bacteria 3165
80 Ga0451577_0112481 3300042876 Bacteria 2437
81 Ga0451577_0134427 3300042876 Bacteria 2220
82 Ga0451577_0324739 3300042876 Unclassified 1396
83 Ga0451577_0538282 3300042876 Bacteria 1060
84 Ga0451577_0974584 3300042876 Unclassified 762
85 Ga0451577_1212593 3300042876 Unclassified 673
86 Ga0451577_1446382 3300042876 Bacteria 609
87 Ga0453683_0009376 3300044673 Bacteria 6538
88 Ga0453683_0034906 3300044673 Bacteria 3170
89 Ga0453683_0202153 3300044673 Bacteria 1261
90 Ga0453683_0248881 3300044673 Unclassified 1133
91 Ga0453683_0462072 3300044673 Bacteria 822
92 Ga0453684_0000012 3300044712 Bacteria 1062512
93 Ga0453684_0000269 3300044712 Bacteria 223826
94 Ga0453684_0001419 3300044712 Bacteria 68999
95 Ga0453684_0031569 3300044712 Bacteria 7442
96 Ga0453684_0069087 3300044712 Bacteria 4482
97 Ga0453684_0076212 3300044712 Unclassified 4211
98 Ga0453684_0093093 3300044712 Bacteria 3713
99 Ga0453684_0107217 3300044712 Bacteria 3402
100 Ga0453684_0126024 3300044712 Bacteria 3082
101 Ga0453684_0166475 3300044712 Bacteria 2602
102 Ga0453684_0190923 3300044712 Bacteria 2396
103 Ga0453684_0215940 3300044712 Bacteria 2225
104 Ga0453684_0217087 3300044712 Bacteria 2218
105 Ga0453684_0259488 3300044712 Unclassified 1991
106 Ga0453684_0263798 3300044712 Unclassified 1972
107 Ga0453684_0372162 3300044712 Bacteria 1606
108 Ga0453684_0422277 3300044712 Unclassified 1489
109 Ga0453684_0698906 3300044712 Bacteria 1102
110 Ga0453684_0985973 3300044712 Bacteria 897
111 Ga0453684_0994197 3300044712 Bacteria 892
112 Ga0453684_1184488 3300044712 Unclassified 803
113 Ga0453684_1307595 3300044712 Unclassified 756
114 Ga0453684_1492962 3300044712 Unclassified 697
115 Ga0453684_1888087 3300044712 Unclassified 605
116 Ga0451576_0000322 3300045051 Bacteria 116299
117 Ga0451576_0006294 3300045051 Bacteria 14601
118 Ga0451576_0045505 3300045051 Bacteria 4621
119 Ga0451576_0059808 3300045051 Bacteria 3977
120 Ga0451576_0486312 3300045051 Bacteria 1296
121 Ga0451576_0755167 3300045051 Bacteria 1022
122 Ga0451576_0838983 3300045051 Bacteria 965
123 Ga0496106_0076972 3300048909 Unclassified 2558
124 Ga0501031_0964620 3300049568 Unclassified 545
125 Ga0501036_1661088 3300049572 Unclassified 515
126 Ga0501040_0450054 3300049576 Bacteria 927
127 Ga0501071_0880111 3300049587 Bacteria 691
128 Ga0501072_0197241 3300049588 Bacteria 1605
129 Ga0501073_0064424 3300049589 Bacteria 2556
130 Ga0501075_0919858 3300049591 Unclassified 665
131 Ga0501076_0024489 3300049592 Bacteria 4666
132 Ga0501076_0115902 3300049592 Bacteria 2168
133 Ga0501080_0231276 3300049742 Bacteria 1690
134 Ga0501083_1051180 3300049744 Bacteria 530
135 nmdc:mga05p37_136335_c1 3300050507 Bacteria 3010
136 nmdc:mga05p37_257569_c1 3300050507 Bacteria 2090
137 nmdc:mga09592_114490_c1 3300050508 Bacteria 2315
138 nmdc:mga09592_37846_c1 3300050508 Bacteria 4048
139 nmdc:mga09592_700664_c1 3300050508 Bacteria 862
140 nmdc:mga0qj67_190905_c1 3300050509 Bacteria 1665
141 nmdc:mga06r32_1004029_c1 3300050510 Bacteria 787
142 nmdc:mga06r32_258501_c1 3300050510 Bacteria 1729
143 nmdc:mga06r32_37094_c1 3300050510 Bacteria 4610
144 nmdc:mga08y16_121225_c1 3300050511 Bacteria 2721
145 nmdc:mga0n895_444706_c1 3300050512 Bacteria 1309
146 Ga0501084_0088930 3300054114 Bacteria 2593
147 Ga0453684_0178983
148 JGI25406J46586_10005276
149 Ga0065704_10016991
150 Ga0065704_10108390
151 Ga0065704_10304184
152 Ga0065707_10008607
153 Ga0065707_10087290
154 Ga0065707_10199794
155 Ga0065707_10620430
156 Ga0070682_100226853
157 Ga0070689_101219518
158 Ga0070703_10060279
159 Ga0070694_100203189
160 Ga0070706_100328905
161 Ga0070698_100137560
162 Ga0070693_100116212
163 Ga0070704_100820746
164 Ga0068857_102484305
165 Ga0068859_100541388
166 Ga0068864_100171427
167 Ga0068863_100899496
168 Ga0068862_100322332
169 Ga0081539_10001964
170 Ga0075427_10017472
171 Ga0075370_10381791
172 Ga0075428_100398857
173 Ga0075430_100048292
174 Ga0075431_100026323
175 Ga0075434_100251686
176 Ga0075429_100039648
177 Ga0075429_100817501
178 Ga0075429_101743866
179 Ga0075429_101743867
180 Ga0097620_100541461
181 Ga0111539_10103207
182 Ga0114129_10135932
183 Ga0114129_10419708
184 Ga0114129_11156619
185 Ga0157380_10316243
186 Ga0207653_10059997
187 Ga0207684_10165602
188 Ga0207709_10497177
189 Ga0207712_10690508
190 Ga0268265_10623200
191 Ga0268265_11249852
192 Ga0265320_10097134
193 Ga0265331_10324622
194 Ga0316575_10264714
195 Ga0316579_10016558
196 Ga0316579_10024758
197 Ga0316579_10156905
198 Ga0316579_10183345
199 Ga0316579_10252451
200 Ga0316576_10040415
201 Ga0307415_101177648
202 Ga0316583_10092639
203 Ga0316585_10056806
204 Ga0316585_10283916
205 Ga0316580_10201195
206 Ga0316580_10239796
207 Ga0316574_0096430
208 Ga0316574_0140883
209 Ga0316582_0063318
210 Ga0316582_0259762
211 Ga0316584_0028916
212 Ga0316584_0098624
213 Ga0316584_0106839
214 Ga0316584_0671705
215 Ga0316581_0006619
216 Ga0451789_0998577
217 Ga0451791_0600331
218 Ga0451800_1476044
219 Ga0451849_1564314
220 Ga0451853_0391457
221 Ga0439433_0191039
222 Ga0451577_0001811
223 Ga0451577_0003132
224 Ga0451577_0031097
225 Ga0451577_0068495
226 Ga0451577_0112481
227 Ga0451577_0134427
228 Ga0451577_0324739
229 Ga0451577_0538282
230 Ga0451577_0974584
231 Ga0451577_1212593
232 Ga0451577_1446382
233 Ga0453683_0009376
234 Ga0453683_0034906
235 Ga0453683_0202153
236 Ga0453683_0248881
237 Ga0453683_0462072
238 Ga0453684_0000012
239 Ga0453684_0000269
240 Ga0453684_0001419
241 Ga0453684_0031569
242 Ga0453684_0069087
243 Ga0453684_0076212
244 Ga0453684_0093093
245 Ga0453684_0107217
246 Ga0453684_0126024
247 Ga0453684_0166475
248 Ga0453684_0190923
249 Ga0453684_0215940
250 Ga0453684_0217087
251 Ga0453684_0259488
252 Ga0453684_0263798
253 Ga0453684_0372162
254 Ga0453684_0422277
255 Ga0453684_0698906
256 Ga0453684_0985973
257 Ga0453684_0994197
258 Ga0453684_1184488
259 Ga0453684_1307595
260 Ga0453684_1492962
261 Ga0453684_1888087
262 Ga0451576_0000322
263 Ga0451576_0006294
264 Ga0451576_0045505
265 Ga0451576_0059808
266 Ga0451576_0486312
267 Ga0451576_0755167
268 Ga0451576_0838983
269 Ga0496106_0076972
270 Ga0501031_0964620
271 Ga0501036_1661088
272 Ga0501040_0450054
273 Ga0501071_0880111
274 Ga0501072_0197241
275 Ga0501073_0064424
276 Ga0501075_0919858
277 Ga0501076_0024489
278 Ga0501076_0115902
279 Ga0501080_0231276
280 Ga0501083_1051180
281 nmdc:mga05p37_136335_c1
282 nmdc:mga05p37_257569_c1
283 nmdc:mga09592_114490_c1
284 nmdc:mga09592_37846_c1
285 nmdc:mga09592_700664_c1
286 nmdc:mga0qj67_190905_c1
287 nmdc:mga06r32_1004029_c1
288 nmdc:mga06r32_258501_c1
289 nmdc:mga06r32_37094_c1
290 nmdc:mga08y16_121225_c1
291 nmdc:mga0n895_444706_c1
292 Ga0501084_0088930

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01127

Sdh_cyt

Succinate dehydrogenase/Fumarate reductase transmembrane subunit

27

146

0.71

Structural Annotation

Top 5 Hits

ID Description Score Start End
6lum-assembly1.cif.gz_C structure of mycobacterium smegmatis succinate dehydrogenase 2 0.8578 15 114
6lum-assembly1.cif.gz_C structure of mycobacterium smegmatis succinate dehydrogenase 2 0.7316 15 114
1nek-assembly1.cif.gz_C complex ii (succinate dehydrogenase) from e. coli with ubiquinone bound 0.728 16 111
2bs3-assembly1.cif.gz_F glu c180 -> gln variant quinol:fumarate reductase from wolinella succinogenes 0.6103 18 111
1nek-assembly1.cif.gz_C complex ii (succinate dehydrogenase) from e. coli with ubiquinone bound 0.6032 16 111
ID Description Score Start End Superfamily
af_Q2FZC9_1_204_1.20.1300.10 Mainly Alpha;Up-down Bundle;3 helical TM bundles of succinate and fumarate reductases;Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.7444 20 112 1.20.1300.10
af_Q5ALU6_34_175_1.20.1300.10 Mainly Alpha;Up-down Bundle;3 helical TM bundles of succinate and fumarate reductases;Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.7175 15 109 1.20.1300.10
2bs3C00 Mainly Alpha;Up-down Bundle;3 helical TM bundles of succinate and fumarate reductases;Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.6101 18 111 1.20.1300.10
af_Q04487_57_196_1.20.1300.10 Mainly Alpha;Up-down Bundle;3 helical TM bundles of succinate and fumarate reductases;Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.607 4 108 1.20.1300.10
af_Q2FZC9_1_204_1.20.1300.10 Mainly Alpha;Up-down Bundle;3 helical TM bundles of succinate and fumarate reductases;Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.5973 20 112 1.20.1300.10
ID Description Score Start End GO Terms
AF-A0A1F8TSV0-F1-model_v4 Succinate dehydrogenase, cytochrome b556 subunit 0.9377 27 118 GO:0016020
GO:0046872
AF-A0A399ZQ39-F1-model_v4 Succinate dehydrogenase, cytochrome b556 subunit 0.919 1 118 GO:0016020
GO:0046872
AF-A0A399ZQ39-F1-model_v4 Succinate dehydrogenase, cytochrome b556 subunit 0.9116 1 118 GO:0016020
GO:0046872
AF-A0A3L7WND9-F1-model_v4 Succinate dehydrogenase, cytochrome b556 subunit 0.8819 23 116 GO:0006099
GO:0009055
GO:0016020
GO:0046872
AF-A0A3M1I8S9-F1-model_v4 Succinate dehydrogenase, cytochrome b556 subunit 0.876 4 118 GO:0016020
GO:0046872

Map