F194323

General Info

Members Datasets Scaffolds Average Seq Length
145 114 290 660

Family's Representative Sequence

Representative Sequence 3300006237|Ga0097621_100018882|Ga0097621_1000188823
Length 689
Sequence MIKAIFVIKVKDKKPVKSLAAILLFGLYAATTFSQSNAQAKCMINVKVDKPVATVQPTMWGIFFEDINMGADGGIYAELVKNRSFEFYKPLAGWTVQPADISYVPFQKQFGEGTVMIVNRQEKNTANPRFIRITANNVSKGSLGLSNEGFDGMGIRKNVQYNFSMMYHQQAAGFKLYIELVDSTGKNLGSTSVTPSESGNEWHKVSASFVATSTESKGRMNIWFEGNGVIDLDMISIFPGDTWKNRSGGMRSDLVQLLADLKPGFIRFPGGCIVEGRELSTRYQWKKTIGPVEERQLIVNRWNTEIVNRPAPDYFQTFGLGFFEYFQLAEDIGAEPLPILNCGMACQFNTAEVAPIEQLDPYVQDALDLIEFANGNVNTKWGAVRAQLGHPAPFNLKMIGVGNENWGPQYVERLKIFQKAIKEKYPAIKIIASTGAMYEGNMFDYLTAELKKIKPEFIDEHYYNRPEWFLKNATRYDNYDRGGSKIFAGEYAAQSDRVVSTENKNNLCTAIAEAAFLTGLERNADVVNMASYAPLFARVDGWQWKPDLIWFDNLHAYGTPNYYVQKLFSNNKGTDVIPALMNDKPLTGQDSLYASAVIDKNTKEVIIKIVNSSSNERSASLMIEGVKTLRSPASVTVLTGTSLEEENSIDSPEAIKPVVQSTNVKGSEINITVKPNSVTVIRIGMNSSK

Samples

Sample ID Description Type Environment
1 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
8 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
9 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
10 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
11 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
12 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
13 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
14 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
15 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
16 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
20 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
21 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
22 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
23 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
24 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
25 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
26 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
27 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
28 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
30 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
32 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
33 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
34 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
35 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
36 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
37 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
38 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
39 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
40 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
41 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
42 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
43 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
45 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
69 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
70 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
71 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
72 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
73 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
74 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
75 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
76 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
77 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
78 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
79 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
80 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
81 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
82 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
83 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
84 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
85 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
86 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
87 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
88 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
89 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
90 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
91 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
92 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
95 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
96 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
97 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
98 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
99 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
100 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
101 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
102 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
103 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
104 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
105 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
106 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
107 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
108 2738541278 Niastella sp. CF465 Isolate Unclassified
109 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
110 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
111 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
112 2896344016 Sphingobacterium sp. SGL-16 Isolate Rhizosphere
113 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
114 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.79
Metatranscriptomes 0
Isolates 6.21

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.66
Nodule 0
Rhizoplane 0
Rhizosphere 79.31
Stem 0
Stem Tuber 0
Unclassified 4.83

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0097621_100018882 3300006237 Bacteria 5280
2 SwRhRL2b_contig_904052 2162886007 Bacteria 14886
3 rootH1_10061357 3300003316 Bacteria 7306
4 rootH2_10006861 3300003320 Bacteria 4094
5 rootH2_10123819 3300003320 Bacteria 2412
6 rootL2_10108605 3300003322 Bacteria 3685
7 rootH1_10002058 3300003323 Bacteria 40056
8 rootH1_10015526 3300003323 Bacteria 29229
9 rootH1_10126175 3300003323 Bacteria 8944
10 JGI25160J50197_1002355 3300003354 Bacteria 8839
11 Ga0065714_10002467 3300005288 Bacteria 23476
12 Ga0065704_10000219 3300005289 Bacteria 83241
13 Ga0068869_100022141 3300005334 Bacteria 4376
14 Ga0070666_10014964 3300005335 Bacteria 4943
15 Ga0070673_100014547 3300005364 Bacteria 5486
16 Ga0070667_100001870 3300005367 Bacteria 18708
17 Ga0070678_100007237 3300005456 Bacteria 6569
18 Ga0070684_100080620 3300005535 Unclassified 2879
19 Ga0070672_100027757 3300005543 Bacteria 4225
20 Ga0070665_100000002 3300005548 Bacteria 849037
21 Ga0068855_100005468 3300005563 Bacteria 15499
22 Ga0068857_100014072 3300005577 Bacteria 6962
23 Ga0068859_100000086 3300005617 Bacteria 85696
24 Ga0068859_100001050 3300005617 Bacteria 28328
25 Ga0068859_100056104 3300005617 Bacteria 3964
26 Ga0068859_100167480 3300005617 Bacteria 2277
27 Ga0068864_100009417 3300005618 Bacteria 8059
28 Ga0068861_100025783 3300005719 Bacteria 4268
29 Ga0068863_100006411 3300005841 Bacteria 11538
30 Ga0068858_100014071 3300005842 Bacteria 7544
31 Ga0068860_100000019 3300005843 Bacteria 299860
32 Ga0068862_100014250 3300005844 Bacteria 6593
33 Ga0097621_100021444 3300006237 Bacteria 4998
34 Ga0068865_100054672 3300006881 Bacteria 2775
35 Ga0097620_100000086 3300006931 Bacteria 85696
36 Ga0097620_100001050 3300006931 Bacteria 28328
37 Ga0097620_100056104 3300006931 Bacteria 3964
38 Ga0097620_100167481 3300006931 Bacteria 2277
39 Ga0105240_10000607 3300009093 Bacteria 66455
40 Ga0114129_10000432 3300009147 Bacteria 49800
41 Ga0105243_10000007 3300009148 Bacteria 445042
42 Ga0105241_10016030 3300009174 Bacteria 5493
43 Ga0105237_10000083 3300009545 Bacteria 127032
44 Ga0105237_10029157 3300009545 Bacteria 5614
45 Ga0105249_10006494 3300009553 Bacteria 10172
46 Ga0105239_10003010 3300010375 Bacteria 21011
47 Ga0157373_10000097 3300013100 Bacteria 71713
48 Ga0157373_10002256 3300013100 Bacteria 14605
49 Ga0157371_10000708 3300013102 Bacteria 39139
50 Ga0157370_10085427 3300013104 Bacteria 2964
51 Ga0163162_10004522 3300013306 Bacteria 13393
52 Ga0163162_10010565 3300013306 Bacteria 8980
53 Ga0157375_10019398 3300013308 Bacteria 6184
54 Ga0157375_10117921 3300013308 Bacteria 2760
55 Ga0163163_10000521 3300014325 Bacteria 34306
56 Ga0163163_10005127 3300014325 Bacteria 11295
57 Ga0157379_10048521 3300014968 Bacteria 3790
58 Ga0157379_10057381 3300014968 Bacteria 3479
59 Ga0157379_10092190 3300014968 Bacteria 2718
60 Ga0157379_10106189 3300014968 Unclassified 2521
61 Ga0209148_1000550 3300025254 Bacteria 35616
62 Ga0207426_1000023 3300025302 Bacteria 545465
63 Ga0207647_10019258 3300025904 Bacteria 4593
64 Ga0207645_10002342 3300025907 Bacteria 14952
65 Ga0207654_10014976 3300025911 Bacteria 4016
66 Ga0207695_10001170 3300025913 Bacteria 45242
67 Ga0207671_10001490 3300025914 Bacteria 27010
68 Ga0207671_10075188 3300025914 Bacteria 2526
69 Ga0207659_10028287 3300025926 Bacteria 3808
70 Ga0207706_10090865 3300025933 Unclassified 2684
71 Ga0207686_10037820 3300025934 Unclassified 2915
72 Ga0207709_10000049 3300025935 Bacteria 237124
73 Ga0207704_10015497 3300025938 Bacteria 3886
74 Ga0207691_10007171 3300025940 Bacteria 10753
75 Ga0207691_10129163 3300025940 Bacteria 2233
76 Ga0207689_10000260 3300025942 Bacteria 47416
77 Ga0207679_10006954 3300025945 Bacteria 7170
78 Ga0207658_10002432 3300025986 Bacteria 13613
79 Ga0207703_10009121 3300026035 Bacteria 7811
80 Ga0207678_10060027 3300026067 Unclassified 3272
81 Ga0207641_10000061 3300026088 Bacteria 160161
82 Ga0207648_10001218 3300026089 Bacteria 28842
83 Ga0207648_10002444 3300026089 Bacteria 19976
84 Ga0207648_10029079 3300026089 Bacteria 4900
85 Ga0207676_10007949 3300026095 Bacteria 7541
86 Ga0207674_10019229 3300026116 Bacteria 7405
87 Ga0207683_10019328 3300026121 Bacteria 5816
88 Ga0268266_10000022 3300028379 Bacteria 508060
89 Ga0268264_10000115 3300028381 Bacteria 202634
90 Ga0268264_10034398 3300028381 Bacteria 4168
91 Ga0268264_10093855 3300028381 Bacteria 2593
92 Ga0307515_10000001 3300028794 Bacteria 4259510
93 Ga0307511_10001438 3300030521 Bacteria 25120
94 Ga0307408_100004534 3300031548 Bacteria 9415
95 Ga0307508_10003309 3300031616 Bacteria 16378
96 Ga0307412_10000031 3300031911 Bacteria 207128
97 Ga0307414_10003132 3300032004 Bacteria 8783
98 Ga0307414_10011212 3300032004 Bacteria 5246
99 Ga0307510_10008734 3300033180 Bacteria 12072
100 Ga0451577_0022890 3300042876 Bacteria 5703
101 Ga0451577_0042928 3300042876 Bacteria 4052
102 Ga0466972_0000012 3300044658 Bacteria 246338
103 Ga0466972_0004747 3300044658 Bacteria 6804
104 Ga0453683_0010094 3300044673 Bacteria 6273
105 Ga0466966_0000100 3300044684 Bacteria 53324
106 Ga0453684_0001568 3300044712 Bacteria 63367
107 Ga0466957_0004476 3300044842 Bacteria 7794
108 Ga0466959_0004722 3300045049 Bacteria 9177
109 Ga0451576_0054432 3300045051 Bacteria 4189
110 Ga0495650_0009576 3300046471 Bacteria 5496
111 Ga0495648_0001367 3300046524 Bacteria 24061
112 Ga0495587_0019978 3300046536 Unclassified 4141
113 Ga0495634_0043237 3300046642 Unclassified 3054
114 Ga0495611_0000312 3300046648 Bacteria 32756
115 Ga0495687_009822 3300047443 Bacteria 5312
116 Ga0496116_0039398 3300048919 Bacteria 3268
117 Ga0496117_0000769 3300048920 Bacteria 50620
118 Ga0496118_0096452 3300048921 Bacteria 2015
119 Ga0501047_0021472 3300049581 Bacteria 6199
120 Ga0501047_0112373 3300049581 Bacteria 2606
121 Ga0501048_0082581 3300049582 Bacteria 2267
122 Ga0501223_001946 3300049663 Bacteria 4641
123 Ga0501225_0001561 3300049705 Bacteria 7185
124 Ga0501044_0001460 3300049823 Bacteria 27734
125 nmdc:mga05p37_1849_c1 3300050507 Bacteria 24661
126 Ga0500578_0000012 3300053086 Bacteria 188658
127 Ga0500583_0000027 3300053092 Bacteria 109138
128 Ga0500583_0001117 3300053092 Bacteria 7648
129 Ga0500583_0014748 3300053092 Bacteria 3071
130 Ga0500651_0000390 3300053093 Bacteria 23995
131 Ga0500562_000006 3300053108 Bacteria 249231
132 Ga0500658_0003035 3300053134 Bacteria 6435
133 Ga0500616_0024648 3300053153 Bacteria 3341
134 Ga0500622_0005169 3300053156 Bacteria 7910
135 Ga0500637_0016731 3300053178 Bacteria 3915
136 Ga0500645_007013 3300053730 Bacteria 3963
137 2722730747 2721755487 Bacteria 6357185
138 2738727420 2738541278 Bacteria 9755573
139 2852628155 2852627209 Bacteria 5896285
140 2852631161 2852627209 Bacteria 5896285
141 2884793913 2884791551 Bacteria 8511252
142 2896318875 2896317667 Bacteria 4606601
143 2896344545 2896344016 Bacteria 3811746
144 2904783251 2904780799 Bacteria 5840761
145 2919180859 2919177583 Bacteria 5641607
146 Ga0097621_100018882
147 SwRhRL2b_contig_904052
148 rootH1_10061357
149 rootH2_10006861
150 rootH2_10123819
151 rootL2_10108605
152 rootH1_10002058
153 rootH1_10015526
154 rootH1_10126175
155 JGI25160J50197_1002355
156 Ga0065714_10002467
157 Ga0065704_10000219
158 Ga0068869_100022141
159 Ga0070666_10014964
160 Ga0070673_100014547
161 Ga0070667_100001870
162 Ga0070678_100007237
163 Ga0070684_100080620
164 Ga0070672_100027757
165 Ga0070665_100000002
166 Ga0068855_100005468
167 Ga0068857_100014072
168 Ga0068859_100000086
169 Ga0068859_100001050
170 Ga0068859_100056104
171 Ga0068859_100167480
172 Ga0068864_100009417
173 Ga0068861_100025783
174 Ga0068863_100006411
175 Ga0068858_100014071
176 Ga0068860_100000019
177 Ga0068862_100014250
178 Ga0097621_100021444
179 Ga0068865_100054672
180 Ga0097620_100000086
181 Ga0097620_100001050
182 Ga0097620_100056104
183 Ga0097620_100167481
184 Ga0105240_10000607
185 Ga0114129_10000432
186 Ga0105243_10000007
187 Ga0105241_10016030
188 Ga0105237_10000083
189 Ga0105237_10029157
190 Ga0105249_10006494
191 Ga0105239_10003010
192 Ga0157373_10000097
193 Ga0157373_10002256
194 Ga0157371_10000708
195 Ga0157370_10085427
196 Ga0163162_10004522
197 Ga0163162_10010565
198 Ga0157375_10019398
199 Ga0157375_10117921
200 Ga0163163_10000521
201 Ga0163163_10005127
202 Ga0157379_10048521
203 Ga0157379_10057381
204 Ga0157379_10092190
205 Ga0157379_10106189
206 Ga0209148_1000550
207 Ga0207426_1000023
208 Ga0207647_10019258
209 Ga0207645_10002342
210 Ga0207654_10014976
211 Ga0207695_10001170
212 Ga0207671_10001490
213 Ga0207671_10075188
214 Ga0207659_10028287
215 Ga0207706_10090865
216 Ga0207686_10037820
217 Ga0207709_10000049
218 Ga0207704_10015497
219 Ga0207691_10007171
220 Ga0207691_10129163
221 Ga0207689_10000260
222 Ga0207679_10006954
223 Ga0207658_10002432
224 Ga0207703_10009121
225 Ga0207678_10060027
226 Ga0207641_10000061
227 Ga0207648_10001218
228 Ga0207648_10002444
229 Ga0207648_10029079
230 Ga0207676_10007949
231 Ga0207674_10019229
232 Ga0207683_10019328
233 Ga0268266_10000022
234 Ga0268264_10000115
235 Ga0268264_10034398
236 Ga0268264_10093855
237 Ga0307515_10000001
238 Ga0307511_10001438
239 Ga0307408_100004534
240 Ga0307508_10003309
241 Ga0307412_10000031
242 Ga0307414_10003132
243 Ga0307414_10011212
244 Ga0307510_10008734
245 Ga0451577_0022890
246 Ga0451577_0042928
247 Ga0466972_0000012
248 Ga0466972_0004747
249 Ga0453683_0010094
250 Ga0466966_0000100
251 Ga0453684_0001568
252 Ga0466957_0004476
253 Ga0466959_0004722
254 Ga0451576_0054432
255 Ga0495650_0009576
256 Ga0495648_0001367
257 Ga0495587_0019978
258 Ga0495634_0043237
259 Ga0495611_0000312
260 Ga0495687_009822
261 Ga0496116_0039398
262 Ga0496117_0000769
263 Ga0496118_0096452
264 Ga0501047_0021472
265 Ga0501047_0112373
266 Ga0501048_0082581
267 Ga0501223_001946
268 Ga0501225_0001561
269 Ga0501044_0001460
270 nmdc:mga05p37_1849_c1
271 Ga0500578_0000012
272 Ga0500583_0000027
273 Ga0500583_0001117
274 Ga0500583_0014748
275 Ga0500651_0000390
276 Ga0500562_000006
277 Ga0500658_0003035
278 Ga0500616_0024648
279 Ga0500622_0005169
280 Ga0500637_0016731
281 Ga0500645_007013
282 2722730747
283 2738727420
284 2852628155
285 2852631161
286 2884793913
287 2896318875
288 2896344545
289 2904783251
290 2919180859

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF22848

ASD1_dom

Alpha-L-arabinofuranosidase 1 domain

256

492

0.91

PF06964

Alpha-L-AF_C

Alpha-L-arabinofuranosidase C-terminal domain

489

677

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
6zq0-assembly1.cif.gz_AAA structure of a-l-araazi-bound mggh51 a-l-arabinofuranosidase crystal type 1 0.8774 26 660
6zq0-assembly1.cif.gz_AAA structure of a-l-araazi-bound mggh51 a-l-arabinofuranosidase crystal type 1 0.8748 26 660
2y2w-assembly2.cif.gz_B elucidation of the substrate specificity and protein structure of abfb, a family 51 alpha-l-arabinofuranosidase from bifidobacterium longum. 0.7881 221 658
2y2w-assembly1.cif.gz_C elucidation of the substrate specificity and protein structure of abfb, a family 51 alpha-l-arabinofuranosidase from bifidobacterium longum. 0.7879 221 657
2c7f-assembly6.cif.gz_F the structure of a family 51 arabinofuranosidase, araf51, from clostridium thermocellum in complex with 1,5-alpha-l-arabinotriose. 0.7872 219 656
ID Description Score Start End Superfamily
af_A0A1D6JP54_86_163_2.60.40.1180 Mainly Beta;Sandwich;Immunoglobulin-like;Golgi alpha-mannosidase II 0.9248 585 657 2.60.40.1180
af_A0A0R0KHR7_531_648_2.60.40.1180 Mainly Beta;Sandwich;Immunoglobulin-like;Golgi alpha-mannosidase II 0.9217 565 657 2.60.40.1180
af_A0A0P0Y6M0_1_243_3.20.20.80 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.91 294 543 3.20.20.80
3fw6A01 Mainly Beta;Sandwich;Immunoglobulin-like;Golgi alpha-mannosidase II 0.9094 548 660 2.60.40.1180
af_A0A0R0KHR7_221_530_3.20.20.80 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.8848 214 543 3.20.20.80
ID Description Score Start End GO Terms
AF-A0A7Y9C533-F1-model_v4 non-reducing end alpha-L-arabinofuranosidase (EC 3.2.1.55) 0.9696 478 660 GO:0046373
GO:0046556
AF-A0A3C0S2G7-F1-model_v4 non-reducing end alpha-L-arabinofuranosidase (EC 3.2.1.55) 0.9691 355 660 GO:0046373
GO:0046556
AF-A0A4Q3S5V0-F1-model_v4 non-reducing end alpha-L-arabinofuranosidase (EC 3.2.1.55) 0.9684 302 660 GO:0046373
GO:0046556
AF-A0A6G1V6F8-F1-model_v4 deleted 0.9674 489 656
AF-A0A2D6SGT1-F1-model_v4 deleted 0.9671 438 660

Map