F194264

General Info

Members Datasets Scaffolds Average Seq Length
145 118 135 326

Family's Representative Sequence

Representative Sequence 3300005985|Ga0081539_10034254|Ga0081539_100342543
Length 368
Sequence MSTYYGGDDHLTIQYGSNPLAEHEQHDHAHGDHEGGLWHRLGHLVTPHSHDSADKVDSAMETSREGMRALWISLAGLGATALLQALIVVFSGSVALLGDTLHNLADALTAVPLGIAFWLGRRAATRAYTYGFGRAEDIAGIFIVLVIAASSIAAAWFAVERLLNPRPMTHLPWVFAAGIIGFLGNEIVARYRITVGRRIGSAALVADGLHARTDGFTSLAVVLAAAGAWVGWNWADPVVGLGITVAIAFVLKDAAREVYHRLMDRVDPELADQAEKTLHEVPGVRDVSGLRLRWIGHRMHAEAAIVVDRQLSLLAAHEIAADAEHQLTHHVPRLTGATVHVDPDSYPGDDHHSELSHQRQDRQATETT

Samples

Sample ID Description Type Environment
1 2582580736 Prauserella sp. Am3 Isolate Unclassified
2 2622736626 Micromonospora rhizosphaerae DSM 45431 Isolate Rhizosphere
3 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
4 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
5 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
6 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
7 2996221748 Micromonospora veneta CAP181 Isolate Unclassified
8 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
13 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
14 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
15 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
16 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
22 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
23 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
24 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
25 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
26 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
27 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
28 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
29 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
30 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
31 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
33 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
34 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
35 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
36 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
37 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
38 3300009988 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_233 metaG Metagenome Rhizosphere
39 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
40 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
41 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
42 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
43 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
44 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
45 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
46 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
77 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
78 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
79 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
80 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
81 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
82 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
83 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
84 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
85 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
86 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
87 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
88 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
89 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
90 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
91 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
92 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
93 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
94 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
95 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
96 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
97 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
98 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
99 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
100 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
101 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
102 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
103 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
104 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
105 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
106 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
107 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
108 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
109 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
111 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
112 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
113 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
114 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
115 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
116 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
117 8055172936 Sphaerisporangium perillae NEAU-ZS1 Isolate Unclassified
118 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 91.72
Metatranscriptomes 1.38
Isolates 6.9

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.76
Nodule 0.69
Rhizoplane 4.14
Rhizosphere 81.38
Stem 0
Stem Tuber 0
Unclassified 11.03

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068869_100013900 3300005334 Bacteria 5368
2 Ga0070660_100224258 3300005339 Bacteria 1528
3 Ga0070692_10000974 3300005345 Bacteria 9781
4 Ga0070668_100000212 3300005347 Bacteria 37883
5 Ga0070668_100039410 3300005347 Bacteria 3613
6 Ga0070659_100062363 3300005366 Bacteria 2947
7 Ga0070667_100081127 3300005367 Bacteria 2776
8 Ga0070700_100047146 3300005441 Bacteria 2666
9 Ga0070708_100304889 3300005445 Bacteria 1500
10 Ga0070678_100257172 3300005456 Bacteria 1467
11 Ga0070698_100001109 3300005471 Bacteria 29696
12 Ga0070679_100020534 3300005530 Bacteria 6441
13 Ga0070665_100155990 3300005548 Bacteria 2285
14 Ga0068855_100146099 3300005563 Bacteria 2692
15 Ga0070664_100118465 3300005564 Bacteria 2316
16 Ga0068854_100017610 3300005578 Bacteria 4782
17 Ga0068856_100083552 3300005614 Bacteria 3171
18 Ga0068852_100016503 3300005616 Bacteria 5762
19 Ga0068864_100196940 3300005618 Bacteria 1849
20 Ga0068851_10046811 3300005834 Bacteria 2189
21 Ga0068863_100052083 3300005841 Bacteria 3880
22 Ga0068858_100036550 3300005842 Bacteria 4554
23 Ga0068862_100241028 3300005844 Bacteria 1644
24 Ga0068862_100287939 3300005844 Bacteria 1508
25 Ga0081539_10000527 3300005985 Bacteria 79552
26 Ga0081539_10001103 3300005985 Bacteria 49011
27 Ga0081539_10001742 3300005985 Bacteria 34736
28 Ga0081539_10003473 3300005985 Bacteria 19258
29 Ga0081539_10034254 3300005985 Bacteria 3075
30 Ga0097621_100060156 3300006237 Bacteria 3113
31 Ga0068871_100052551 3300006358 Bacteria 3300
32 Ga0075428_100167158 3300006844 Bacteria 2386
33 Ga0075436_100044400 3300006914 Bacteria 3064
34 Ga0105247_10014013 3300009101 Bacteria 4808
35 Ga0105248_10121770 3300009177 Bacteria 2943
36 Ga0105032_100992 3300009979 Bacteria 2652
37 Ga0105035_100088 3300009988 Bacteria 7415
38 Ga0157373_10253925 3300013100 Bacteria 1244
39 Ga0157372_10246338 3300013307 Bacteria 2074
40 Ga0163163_10034927 3300014325 Bacteria 4874
41 Ga0157379_10104118 3300014968 Bacteria 2547
42 Ga0157376_10126356 3300014969 Bacteria 2275
43 Ga0206354_10310513 3300020081 Bacteria 2806
44 Ga0206353_11836697 3300020082 Bacteria 3513
45 Ga0207656_10071835 3300025321 Bacteria 1539
46 Ga0207680_10161737 3300025903 Bacteria 1502
47 Ga0207643_10000238 3300025908 Bacteria 38484
48 Ga0207705_10081636 3300025909 Bacteria 2356
49 Ga0207654_10027503 3300025911 Bacteria 3091
50 Ga0207657_10160301 3300025919 Bacteria 1827
51 Ga0207649_10011295 3300025920 Bacteria 4921
52 Ga0207652_10025176 3300025921 Bacteria 4944
53 Ga0207650_10051827 3300025925 Bacteria 3038
54 Ga0207687_10022773 3300025927 Bacteria 4172
55 Ga0207644_10018863 3300025931 Bacteria 4674
56 Ga0207706_10125837 3300025933 Bacteria 2254
57 Ga0207706_10347537 3300025933 Bacteria 1290
58 Ga0207711_10174791 3300025941 Bacteria 1950
59 Ga0207661_10001297 3300025944 Bacteria 16724
60 Ga0207679_10080928 3300025945 Bacteria 2482
61 Ga0207667_10217475 3300025949 Bacteria 1958
62 Ga0207668_10000202 3300025972 Bacteria 40372
63 Ga0207640_10122163 3300025981 Bacteria 1868
64 Ga0207677_10054412 3300026023 Bacteria 2731
65 Ga0207703_10000450 3300026035 Bacteria 43301
66 Ga0207678_10000571 3300026067 Bacteria 33712
67 Ga0207708_10034064 3300026075 Bacteria 3873
68 Ga0207702_10025670 3300026078 Bacteria 4890
69 Ga0207641_10035046 3300026088 Bacteria 4179
70 Ga0207676_10018686 3300026095 Bacteria 5044
71 Ga0207683_10008560 3300026121 Bacteria 8756
72 Ga0207698_10048582 3300026142 Bacteria 3222
73 Ga0268266_10210911 3300028379 Bacteria 1781
74 Ga0268265_10089108 3300028380 Bacteria 2460
75 Ga0268265_10338058 3300028380 Bacteria 1370
76 Ga0268264_10094838 3300028381 Bacteria 2580
77 Ga0307515_10000218 3300028794 Bacteria 141810
78 Ga0307515_10035016 3300028794 Bacteria 8187
79 Ga0307513_10284832 3300031456 Bacteria 1427
80 Ga0307408_100006234 3300031548 Bacteria 7917
81 Ga0307508_10006045 3300031616 Bacteria 11421
82 Ga0307516_10021433 3300031730 Bacteria 6648
83 Ga0307405_10002510 3300031731 Bacteria 8117
84 Ga0307405_10108335 3300031731 Bacteria 1877
85 Ga0307413_10038290 3300031824 Bacteria 2778
86 Ga0307413_10173240 3300031824 Bacteria 1530
87 Ga0307410_10000763 3300031852 Bacteria 13535
88 Ga0307410_10001381 3300031852 Bacteria 10924
89 Ga0307410_10320191 3300031852 Bacteria 1230
90 Ga0307406_10000207 3300031901 Bacteria 35322
91 Ga0307406_10000536 3300031901 Bacteria 21874
92 Ga0307407_10003669 3300031903 Bacteria 6352
93 Ga0307407_10044226 3300031903 Bacteria 2508
94 Ga0307407_10044288 3300031903 Bacteria 2507
95 Ga0307407_10071239 3300031903 Bacteria 2069
96 Ga0307409_100000146 3300031995 Bacteria 26640
97 Ga0307409_100000207 3300031995 Bacteria 23333
98 Ga0307409_100043101 3300031995 Bacteria 3385
99 Ga0307409_100311007 3300031995 Bacteria 1470
100 Ga0307416_100000064 3300032002 Bacteria 95532
101 Ga0307416_100000429 3300032002 Bacteria 21447
102 Ga0307416_100177448 3300032002 Bacteria 1992
103 Ga0307414_10051031 3300032004 Bacteria 2869
104 Ga0307414_10123404 3300032004 Bacteria 1996
105 Ga0307411_10271033 3300032005 Bacteria 1346
106 Ga0307415_100003339 3300032126 Bacteria 8148
107 Ga0307415_100003614 3300032126 Bacteria 7902
108 Ga0307415_100152973 3300032126 Bacteria 1778
109 Ga0373951_0000506 3300035091 Bacteria 11122
110 Ga0373962_0041516 3300035242 Bacteria 1297
111 Ga0373935_0005187 3300035692 Bacteria 7670
112 Ga0451793_0028078 3300041452 Bacteria 4901
113 Ga0451833_0379229 3300041491 Bacteria 7317
114 Ga0451837_0577789 3300041494 Bacteria 1287
115 Ga0451853_0197804 3300041512 Bacteria 7327
116 Ga0451853_0404402 3300041512 Bacteria 5681
117 Ga0466969_0008470 3300044656 Bacteria 5454
118 Ga0466966_0014948 3300044684 Bacteria 5137
119 Ga0466970_0025293 3300044765 Bacteria 3108
120 Ga0466970_0063130 3300044765 Bacteria 1986
121 Ga0466960_0202805 3300044901 Bacteria 1084
122 Ga0466959_0003562 3300045049 Bacteria 10243
123 Ga0495629_0151500 3300046459 Bacteria 1612
124 Ga0496108_0000425 3300048911 Bacteria 34246
125 Ga0496110_0111172 3300048913 Bacteria 2462
126 Ga0496112_0340155 3300048915 Bacteria 1444
127 Ga0496113_0245504 3300048916 Bacteria 1429
128 Ga0496114_0062107 3300048917 Bacteria 3126
129 Ga0501032_0330406 3300049569 Bacteria 983
130 Ga0501070_0018882 3300049586 Bacteria 5783
131 Ga0501080_0002289 3300049742 Bacteria 16678
132 Ga0500556_0000095 3300053104 Bacteria 82300
133 Ga0500593_001106 3300053117 Bacteria 9714
134 Ga0500655_000876 3300053133 Bacteria 5838
135 Ga0500616_0001511 3300053153 Bacteria 21966

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053104 Ga0500556_0000095 Ga0500556_0000095_4676_5695 266
2 3300053117 Ga0500593_001106 Ga0500593_001106_7874_8893 266
3 3300053133 Ga0500655_000876 Ga0500655_000876_3984_5003 266
4 3300044765 Ga0466970_0063130 Ga0466970_0063130_307_1347 273
5 3300053153 Ga0500616_0001511 Ga0500616_0001511_14748_15761 290
6 3300005985 Ga0081539_10001742 Ga0081539_1000174219 292
7 3300031456 Ga0307513_10284832 Ga0307513_102848321 293
8 3300031903 Ga0307407_10044288 Ga0307407_100442882 293
9 3300006844 Ga0075428_100167158 Ga0075428_1001671581 294
10 3300041452 Ga0451793_0028078 Ga0451793_0028078_1634_2695 294
11 3300041491 Ga0451833_0379229 Ga0451833_0379229_1951_3012 294
12 3300005367 Ga0070667_100081127 Ga0070667_1000811274 297
13 3300005841 Ga0068863_100052083 Ga0068863_1000520833 297
14 3300005842 Ga0068858_100036550 Ga0068858_1000365506 297
15 3300014325 Ga0163163_10034927 Ga0163163_100349275 297
16 3300026088 Ga0207641_10035046 Ga0207641_100350463 297
17 3300028381 Ga0268264_10094838 Ga0268264_100948382 297
18 3300044656 Ga0466969_0008470 Ga0466969_0008470_1870_2817 297
19 3300044684 Ga0466966_0014948 Ga0466966_0014948_1544_2491 297
20 3300045049 Ga0466959_0003562 Ga0466959_0003562_1002_1949 297
21 3300005985 Ga0081539_10003473 Ga0081539_1000347315 299
22 3300032002 Ga0307416_100177448 Ga0307416_1001774482 300
23 3300048915 Ga0496112_0340155 Ga0496112_0340155_268_1173 301
24 3300048916 Ga0496113_0245504 Ga0496113_0245504_335_1240 301
25 3300046459 Ga0495629_0151500 Ga0495629_0151500_469_1380 303
26 3300048911 Ga0496108_0000425 Ga0496108_0000425_32964_33920 303
27 3300044765 Ga0466970_0025293 Ga0466970_0025293_924_1850 304
28 3300031824 Ga0307413_10038290 Ga0307413_100382904 306
29 3300031995 Ga0307409_100000146 Ga0307409_1000001464 306
30 3300032126 Ga0307415_100003614 Ga0307415_1000036146 306
31 3300044901 Ga0466960_0202805 Ga0466960_0202805_31_972 306
32 3300013307 Ga0157372_10246338 Ga0157372_102463382 307
33 3300005347 Ga0070668_100000212 Ga0070668_10000021236 308
34 3300005347 Ga0070668_100039410 Ga0070668_1000394103 308
35 3300005844 Ga0068862_100241028 Ga0068862_1002410281 308
36 3300005844 Ga0068862_100287939 Ga0068862_1002879392 308
37 3300014968 Ga0157379_10104118 Ga0157379_101041182 308
38 3300025972 Ga0207668_10000202 Ga0207668_1000020237 308
39 3300026035 Ga0207703_10000450 Ga0207703_100004501 308
40 3300028380 Ga0268265_10089108 Ga0268265_100891082 308
41 3300028380 Ga0268265_10338058 Ga0268265_103380581 308
42 3300031903 Ga0307407_10044226 Ga0307407_100442262 310
43 3300031995 Ga0307409_100311007 Ga0307409_1003110072 310
44 3300032005 Ga0307411_10271033 Ga0307411_102710331 310
45 3300049569 Ga0501032_0330406 Ga0501032_0330406_23_967 310
46 3300049586 Ga0501070_0018882 Ga0501070_0018882_4167_5111 310
47 3300049742 Ga0501080_0002289 Ga0501080_0002289_9680_10624 310
48 3300031548 Ga0307408_100006234 Ga0307408_1000062345 311
49 3300031731 Ga0307405_10002510 Ga0307405_100025107 311
50 3300031852 Ga0307410_10000763 Ga0307410_1000076310 311
51 3300031852 Ga0307410_10001381 Ga0307410_1000138110 311
52 3300031901 Ga0307406_10000207 Ga0307406_1000020733 311
53 3300031901 Ga0307406_10000536 Ga0307406_100005367 311
54 3300031903 Ga0307407_10003669 Ga0307407_100036696 311
55 3300031903 Ga0307407_10071239 Ga0307407_100712392 311
56 3300031995 Ga0307409_100000207 Ga0307409_1000002077 311
57 3300032002 Ga0307416_100000064 Ga0307416_10000006482 311
58 3300032002 Ga0307416_100000429 Ga0307416_10000042919 311
59 3300032004 Ga0307414_10123404 Ga0307414_101234042 311
60 3300032126 Ga0307415_100003339 Ga0307415_1000033393 311
61 3300035242 Ga0373962_0041516 Ga0373962_0041516_130_1125 311
62 iso_pu_bacteria 2906799679 2906801500 311
63 3300009979 Ga0105032_100992 Ga0105032_1009922 312
64 iso_pu_bacteria 2582580736 2583150893 312
65 3300009988 Ga0105035_100088 Ga0105035_1000883 313
66 3300005445 Ga0070708_100304889 Ga0070708_1003048892 315
67 3300031731 Ga0307405_10108335 Ga0307405_101083353 317
68 3300031824 Ga0307413_10173240 Ga0307413_101732402 317
69 3300031852 Ga0307410_10320191 Ga0307410_103201911 317
70 3300031995 Ga0307409_100043101 Ga0307409_1000431013 317
71 3300035692 Ga0373935_0005187 Ga0373935_0005187_4959_5993 317
72 3300048917 Ga0496114_0062107 Ga0496114_0062107_1555_2652 317
73 3300005471 Ga0070698_100001109 Ga0070698_10000110932 319
74 3300005564 Ga0070664_100118465 Ga0070664_1001184653 319
75 3300025933 Ga0207706_10125837 Ga0207706_101258373 319
76 3300025945 Ga0207679_10080928 Ga0207679_100809282 319
77 iso_pu_bacteria 2832004796 2832006424 320
78 iso_pu_bacteria 2866065130 2866071333 320
79 3300041512 Ga0451853_0404402 Ga0451853_0404402_507_1529 322
80 3300005985 Ga0081539_10000527 Ga0081539_1000052727 324
81 3300032004 Ga0307414_10051031 Ga0307414_100510312 324
82 iso_pu_bacteria 2996221748 2996228056 324
83 iso_pu_bacteria 8055172936 8055176602 324
84 iso_pu_bacteria 8055412473 8055414517 324
85 3300005334 Ga0068869_100013900 Ga0068869_1000139006 326
86 3300005339 Ga0070660_100224258 Ga0070660_1002242581 326
87 3300005345 Ga0070692_10000974 Ga0070692_1000097411 326
88 3300005366 Ga0070659_100062363 Ga0070659_1000623634 326
89 3300005441 Ga0070700_100047146 Ga0070700_1000471463 326
90 3300005456 Ga0070678_100257172 Ga0070678_1002571721 326
91 3300005530 Ga0070679_100020534 Ga0070679_1000205349 326
92 3300005548 Ga0070665_100155990 Ga0070665_1001559902 326
93 3300005563 Ga0068855_100146099 Ga0068855_1001460993 326
94 3300005578 Ga0068854_100017610 Ga0068854_1000176101 326
95 3300005614 Ga0068856_100083552 Ga0068856_1000835524 326
96 3300005616 Ga0068852_100016503 Ga0068852_10001650310 326
97 3300005618 Ga0068864_100196940 Ga0068864_1001969402 326
98 3300005834 Ga0068851_10046811 Ga0068851_100468113 326
99 3300005985 Ga0081539_10001103 Ga0081539_1000110324 326
100 3300005985 Ga0081539_10034254 Ga0081539_100342543 326
101 3300006237 Ga0097621_100060156 Ga0097621_1000601564 326
102 3300006358 Ga0068871_100052551 Ga0068871_1000525515 326
103 3300006914 Ga0075436_100044400 Ga0075436_1000444003 326
104 3300009101 Ga0105247_10014013 Ga0105247_100140131 326
105 3300009177 Ga0105248_10121770 Ga0105248_101217702 326
106 3300013100 Ga0157373_10253925 Ga0157373_102539251 326
107 3300014969 Ga0157376_10126356 Ga0157376_101263561 326
108 3300020081 Ga0206354_10310513 Ga0206354_103105133 326
109 3300020082 Ga0206353_11836697 Ga0206353_118366974 326
110 3300025321 Ga0207656_10071835 Ga0207656_100718353 326
111 3300025903 Ga0207680_10161737 Ga0207680_101617372 326
112 3300025908 Ga0207643_10000238 Ga0207643_1000023832 326
113 3300025909 Ga0207705_10081636 Ga0207705_100816363 326
114 3300025911 Ga0207654_10027503 Ga0207654_100275033 326
115 3300025919 Ga0207657_10160301 Ga0207657_101603012 326
116 3300025920 Ga0207649_10011295 Ga0207649_100112954 326
117 3300025921 Ga0207652_10025176 Ga0207652_100251765 326
118 3300025925 Ga0207650_10051827 Ga0207650_100518271 326
119 3300025927 Ga0207687_10022773 Ga0207687_100227736 326
120 3300025931 Ga0207644_10018863 Ga0207644_100188631 326
121 3300025933 Ga0207706_10347537 Ga0207706_103475372 326
122 3300025941 Ga0207711_10174791 Ga0207711_101747912 326
123 3300025944 Ga0207661_10001297 Ga0207661_1000129715 326
124 3300025949 Ga0207667_10217475 Ga0207667_102174752 326
125 3300025981 Ga0207640_10122163 Ga0207640_101221633 326
126 3300026023 Ga0207677_10054412 Ga0207677_100544123 326
127 3300026067 Ga0207678_10000571 Ga0207678_1000057123 326
128 3300026075 Ga0207708_10034064 Ga0207708_100340644 326
129 3300026078 Ga0207702_10025670 Ga0207702_100256708 326
130 3300026095 Ga0207676_10018686 Ga0207676_100186863 326
131 3300026121 Ga0207683_10008560 Ga0207683_100085603 326
132 3300026142 Ga0207698_10048582 Ga0207698_100485824 326
133 3300028379 Ga0268266_10210911 Ga0268266_102109111 326
134 3300028794 Ga0307515_10000218 Ga0307515_1000021815 326
135 3300028794 Ga0307515_10035016 Ga0307515_100350163 326
136 3300031616 Ga0307508_10006045 Ga0307508_100060457 326
137 3300031730 Ga0307516_10021433 Ga0307516_100214335 326
138 3300032126 Ga0307415_100152973 Ga0307415_1001529732 326
139 3300035091 Ga0373951_0000506 Ga0373951_0000506_2586_3638 326
140 3300041494 Ga0451837_0577789 Ga0451837_0577789_53_1093 326
141 3300041512 Ga0451853_0197804 Ga0451853_0197804_2301_3383 326
142 3300048913 Ga0496110_0111172 Ga0496110_0111172_1099_2079 326
143 iso_pu_bacteria 2622736626 2623586743 326
144 iso_pu_bacteria 2751185782 2753264092 326
145 iso_pu_bacteria 8003856774 8003863060 326

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01545

Cation_efflux

Cation efflux family

70

263

0.98

PF16916

ZT_dimer

Dimerisation domain of Zinc Transporter

266

344

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
3w8g-assembly1.cif.gz_A mamm v260r 0.9754 229 304
5hsp-assembly1.cif.gz_A-2 mamm ctd m250l 0.9708 229 304
3w63-assembly1.cif.gz_A-2 mamm-ctd 215-293 0.9695 229 304
6han-assembly2.cif.gz_B mamm ctd h264e-e289h 0.9666 229 305
6h5v-assembly1.cif.gz_A mamm ctd h264e 0.9657 229 305
ID Description Score Start End Superfamily
af_P9WGF5_239_328_3.30.70.1350 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Cation efflux protein, cytoplasmic domain 0.9778 225 306 3.30.70.1350
af_Q57891_206_282_3.30.70.1350 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Cation efflux protein, cytoplasmic domain 0.959 227 304 3.30.70.1350
3w8gB00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Cation efflux protein, cytoplasmic domain 0.9546 229 305 3.30.70.1350
af_Q10LJ2_305_379_3.30.70.1350 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Cation efflux protein, cytoplasmic domain 0.9481 228 302 3.30.70.1350
af_Q57891_206_282_3.30.70.1350 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Cation efflux protein, cytoplasmic domain 0.9471 227 304 3.30.70.1350
ID Description Score Start End GO Terms
AF-A0A847XE66-F1-model_v4 Cation transporter 0.9621 230 307 GO:0008324
GO:0016020
AF-A0A430JBK1-F1-model_v4 Cation efflux protein cytoplasmic domain-containing protein 0.9488 236 306
AF-X1NW27-F1-model_v4 Cation efflux protein cytoplasmic domain-containing protein 0.9371 230 305 GO:0008324
GO:0016020
AF-A0A377THM0-F1-model_v4 Ferrous iron efflux protein F 0.9275 223 304
AF-A0A847XE66-F1-model_v4 Cation transporter 0.9161 230 307 GO:0008324
GO:0016020

Feature Viewer

pLDDT pTM Quality
76.14 0.59 Medium
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map