F192446

General Info

Members Datasets Scaffolds Average Seq Length
144 135 79 938

Family's Representative Sequence

Representative Sequence 3300041452|Ga0451793_0657633|Ga0451793_0657633_11192_14158
Length 988
Sequence MRFTGLTTPAVTLNSPPRSRRKSAEQISTLPVAPPDLLIGLAAAVADPAQLRSRATDRLAMGHDASHFALTPTAVVAPADADEIGRLFAVSAAHGVPMTFRSGGTSLSGQAVTDGILVDTRRHFRDIEILDGGARVRIGPGATVRQVNARLARLGRKLGPDPASEIACTLGGVVANNSSGMACGTVANTYNTVESLVLVLPSGTVIDTGAVDADERLRSLEPELYQGLSRLRDRVRGNPASVAVIEQQFSMKNTMGYGLNSLLDHTAPAQILAHLVVGSEGTLAFVASVVMRTVPLLKHAMTGLLVFETLSAATGSLPALVSTGAATIELLDSVSLRVGQADPEADESLRRITVDRHAALLVEYQADSAAAVAELSAAAHPVLRSLPVTGPADVTADPRARARLWHTRKGLYATVAGARPSGTTALLEDIVVPVPALLETCEQLTGLFAKHAYQDSVIFGHAKDGNIHFMLTEQLGGGGPLDRFLGFTEDMVDLVLGQGGSLKAEHGTGRMMAPYVRRQYGDELYEVMREIKRLCDPRGLLNPGVLISDDPDAHINHLKVAPTVEKEVDRCVECGYCEPVCPSRDITTTPRQRIVLRREMQRAEAGGDDALVSQLREEYEYDAIDTCAVDGMCQTACPVSINTGDLMKRLRADNAGKIAKKGWATAAKHWAGTTRAASVALSVTAKLPDALVAGPNKLGRKVIDPDALPLWSPELPAGGAPRRRDEAPAVPASTGTAGAPEIQAGTEAVYFTACVGTMFGPSEAGPGVRESFTQICRRAGITLHHPAELPDLCCGTPWRSKGMTEGYAVMAGRVLPALWAASRQGELPVVCDAASCTEGLRQMLESAVAAPSGQYASLRIVDAVAFVEQQVLPRLSVTRKVPALALHPTCSSTRMGMNDSLRGVAEAVADSVTVPDAWGCCGFAGDRGMLHPELTESATRAQAAELATGSFDAFASCNRTCELGMTRATGAQYQHVLELVDWASRPPS

Samples

Sample ID Description Type Environment
1 2527291627 Frankia casuarinae Thr Isolate Nodule
2 2527291629 Frankia sp. BMG5.23 Isolate Nodule
3 2546825537 Frankia sp. CcI6 Isolate Rhizoplane
4 2554235227 Arthrobacter sp. PAO19 Isolate Rhizosphere
5 2576861822 Frankia sp. CeD Isolate Nodule
6 2622736626 Micromonospora rhizosphaerae DSM 45431 Isolate Rhizosphere
7 2643221549 Agromyces sp. Root1464 Isolate Unclassified
8 2643221575 Microbacterium sp. Root61 Isolate Unclassified
9 2643221616 Leifsonia sp. Root227 Isolate Unclassified
10 2643221619 Agromyces sp. Root81 Isolate Unclassified
11 2643221649 Leifsonia sp. Root4 Isolate Unclassified
12 2654587600 Glutamicibacter halophytocola KLBMP5180 Isolate Unclassified
13 2684623036 Frankia sp. CgIM4 Isolate Nodule
14 2710264753 Frankia sp. KB5 Isolate Nodule
15 2772190715 Micromonospora chokoriensis NRRL B-24750 Isolate Unclassified
16 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
17 2773857924 Frankia sp. CgIS1 Isolate Nodule
18 2808606360 Arthrobacter sp. SLBN-112 Isolate Unclassified
19 2811994871 Arthrobacter sp. SLBN-179 Isolate Unclassified
20 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
21 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
22 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
23 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
24 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
25 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
26 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
27 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
28 2857733635 Salinibacterium sp. R-73062 Isolate Unclassified
29 2858848962 Micromonospora saelicesensis GAR06 Isolate Unclassified
30 2858882152 Micromonospora noduli MED15 Isolate Nodule
31 2858888857 Micromonospora saelicesensis Lupac 06 Isolate Unclassified
32 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
33 2869048445 Micromonospora saelicesensis PSN01 Isolate Unclassified
34 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
35 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
36 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
37 2880495981 Micromonospora vinacea DSM 101695 Isolate Unclassified
38 2884763398 Leifsonia sp. PS1209 Isolate Stem Tuber
39 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
40 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
41 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
42 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
43 2919069694 Microbacterium sp. 1154 Isolate Unclassified
44 2919391150 Arthrobacter ipis 2973 Isolate Unclassified
45 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
46 2929226422 Micromonospora sp. R-74116 Hybrid assembly Isolate Unclassified
47 2932426870 Paenarthrobacter sp. 4246 Isolate Rhizosphere
48 2933418574 Jeotgalibacillus campisalis 4120 Isolate Rhizosphere
49 2939598168 Arthrobacter sp. 754 Isolate Rhizosphere
50 2939647034 Arthrobacter sp. 2762 Isolate Rhizosphere
51 2939674588 Arthrobacter bambusae 3552 Isolate Rhizosphere
52 2945916053 Arthrobacter ulcerisalmonis W1I2 Isolate Rhizosphere
53 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
54 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
55 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
56 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
57 2995463766 Streptacidiphilus fuscans NEAU-YB345 Isolate Unclassified
58 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
59 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
60 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
61 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
62 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
63 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
64 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
65 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
66 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
67 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
68 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
69 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
70 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
71 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
72 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
75 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
83 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
84 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
85 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
86 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
87 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
88 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
89 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
90 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
91 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
92 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
93 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
94 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
95 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
96 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
97 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
98 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
99 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
100 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
101 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
102 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
103 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
104 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
105 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
106 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
107 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
108 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
109 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
110 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
111 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
112 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
119 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
120 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
121 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
122 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
123 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
124 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
125 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
126 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
127 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
128 637000116 Frankia casuarinae CcI3 Isolate Nodule
129 8003870546 Micromonospora tarensis STR1s_6 Isolate Rhizosphere
130 8004021418 Arthrobacter sp. SDTb3-6 Isolate Rhizosphere
131 8004025490 Arthrobacter wenxiniae AETb3-4 Isolate Rhizosphere
132 8054472261 Pseudonocardia terrae RS11V-5 Isolate Rhizosphere
133 8054704163 Micromonospora trifolii NIE79 Isolate Nodule
134 8054727385 Micromonospora alfalfae MED01 Isolate Nodule
135 8054734606 Micromonospora hortensis NIE111 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 54.86
Metatranscriptomes 0
Isolates 45.14

Biome Distribution

Category Percentage (%)
Aerial Root 0.69
Bulb 0
Endosphere 8.33
Nodule 8.33
Rhizoplane 5.56
Rhizosphere 48.61
Stem 0
Stem Tuber 0.69
Unclassified 27.78

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055539_1000006 3300003752 Bacteria 580055
2 Ga0055533_1000002 3300003756 Bacteria 1196393
3 Ga0055525_1000223 3300003759 Bacteria 61497
4 Ga0055541_1002135 3300003841 Bacteria 4022
5 Ga0070658_10005284 3300005327 Bacteria 10488
6 Ga0068868_100002534 3300005338 Bacteria 12692
7 Ga0070668_100030454 3300005347 Bacteria 4103
8 Ga0070671_100001046 3300005355 Bacteria 20386
9 Ga0068855_100016417 3300005563 Bacteria 8902
10 Ga0068860_100064379 3300005843 Bacteria 3482
11 Ga0075365_10006327 3300006038 Bacteria 6504
12 Ga0105243_10011519 3300009148 Bacteria 6692
13 Ga0105242_10008077 3300009176 Bacteria 8098
14 Ga0171462_1002 3300013250 Bacteria 1052134
15 Ga0209566_100032 3300025225 Bacteria 338313
16 Ga0209674_100001 3300025226 Bacteria 4013750
17 Ga0209563_100001 3300025230 Bacteria 4013775
18 Ga0209677_100001 3300025253 Bacteria 4013787
19 Ga0207643_10019947 3300025908 Bacteria 3677
20 Ga0207644_10000937 3300025931 Bacteria 18559
21 Ga0207706_10040782 3300025933 Bacteria 4115
22 Ga0207708_10037228 3300026075 Bacteria 3706
23 Ga0207648_10028831 3300026089 Bacteria 4920
24 Ga0268264_10003317 3300028381 Bacteria 13906
25 Ga0265340_10013099 3300031247 Bacteria 4364
26 Ga0307513_10001986 3300031456 Bacteria 28948
27 Ga0307408_100006202 3300031548 Bacteria 7940
28 Ga0316578_10002793 3300031728 Bacteria 7787
29 Ga0307412_10022341 3300031911 Bacteria 3877
30 Ga0316582_0000734 3300036647 Bacteria 13076
31 Ga0316584_0001852 3300036712 Bacteria 13097
32 Ga0395898_0001976 3300037466 Bacteria 25792
33 Ga0395901_0009511 3300038443 Bacteria 9860
34 Ga0395901_0033002 3300038443 Bacteria 5342
35 Ga0451793_0657633 3300041452 Bacteria 15104
36 Ga0466965_0000855 3300044683 Bacteria 11560
37 Ga0466967_0037998 3300045976 Bacteria 4126
38 Ga0495629_0000199 3300046459 Bacteria 53276
39 Ga0495582_0005363 3300046473 Bacteria 7154
40 Ga0495635_0000254 3300046663 Bacteria 34158
41 Ga0495658_0000022 3300046683 Bacteria 82571
42 Ga0495581_0002868 3300047315 Bacteria 9849
43 Ga0495680_0000512 3300047322 Bacteria 43918
44 Ga0495614_0001057 3300048089 Bacteria 11774
45 Ga0496104_0030119 3300048907 Bacteria 5041
46 Ga0496104_0041406 3300048907 Bacteria 4319
47 Ga0496108_0043874 3300048911 Bacteria 3735
48 Ga0496109_0010429 3300048912 Bacteria 7936
49 Ga0496110_0002289 3300048913 Bacteria 14311
50 Ga0496111_0000903 3300048914 Bacteria 16170
51 Ga0496117_0000071 3300048920 Bacteria 242170
52 Ga0496122_0000116 3300048925 Bacteria 183371
53 Ga0496122_0004523 3300048925 Bacteria 17168
54 Ga0496123_0000009 3300048926 Bacteria 509486
55 Ga0496124_0001161 3300048927 Bacteria 41252
56 Ga0496125_0000192 3300048928 Bacteria 130383
57 Ga0496126_0002773 3300048929 Bacteria 23095
58 Ga0501032_0000208 3300049569 Bacteria 48991
59 Ga0501034_0000357 3300049571 Bacteria 78090
60 Ga0501034_0048461 3300049571 Bacteria 4287
61 Ga0501034_0107130 3300049571 Bacteria 2787
62 Ga0501037_0030526 3300049573 Bacteria 3983
63 Ga0501038_0005070 3300049574 Bacteria 12240
64 Ga0501038_0013508 3300049574 Bacteria 7442
65 Ga0501039_0000155 3300049575 Bacteria 47199
66 Ga0501043_0005567 3300049579 Bacteria 10151
67 Ga0501043_0039789 3300049579 Bacteria 3695
68 Ga0501047_0006265 3300049581 Bacteria 11183
69 Ga0501070_0003705 3300049586 Bacteria 13204
70 Ga0501070_0009300 3300049586 Bacteria 8311
71 Ga0501080_0000134 3300049742 Bacteria 52384
72 Ga0501080_0000433 3300049742 Bacteria 32339
73 Ga0501083_0030970 3300049744 Bacteria 3672
74 Ga0501044_0076369 3300049823 Bacteria 3400
75 nmdc:mga06z11_11237_c1 3300050494 Bacteria 3853
76 nmdc:mga04h51_3308_c1 3300050495 Bacteria 3907
77 Ga0495619_0000369 3300053085 Bacteria 30953
78 Ga0500643_000383 3300053087 Bacteria 34457
79 Ga0466962_0017129 3300061719 Bacteria 3491

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 8003870546 8003873126 822
2 3300049571 Ga0501034_0107130 Ga0501034_0107130_19_2568 826
3 iso_pu_bacteria 2869048445 2869049990 845
4 3300046459 Ga0495629_0000199 Ga0495629_0000199_43979_46723 850
5 3300046473 Ga0495582_0005363 Ga0495582_0005363_1480_4224 850
6 3300046663 Ga0495635_0000254 Ga0495635_0000254_1885_4629 850
7 3300046683 Ga0495658_0000022 Ga0495658_0000022_78070_80814 850
8 3300047315 Ga0495581_0002868 Ga0495581_0002868_3225_5969 850
9 3300047322 Ga0495680_0000512 Ga0495680_0000512_6631_9375 850
10 3300048089 Ga0495614_0001057 Ga0495614_0001057_2862_5606 850
11 3300053085 Ga0495619_0000369 Ga0495619_0000369_1367_4111 850
12 iso_pu_bacteria 2869061728 2869065160 850
13 3300049823 Ga0501044_0076369 Ga0501044_0076369_276_3140 851
14 3300049586 Ga0501070_0003705 Ga0501070_0003705_2118_5006 880
15 3300037466 Ga0395898_0001976 Ga0395898_0001976_11807_14659 886
16 3300038443 Ga0395901_0033002 Ga0395901_0033002_288_3140 890
17 3300048907 Ga0496104_0030119 Ga0496104_0030119_1568_4354 892
18 3300005355 Ga0070671_100001046 Ga0070671_1000010464 896
19 3300013250 Ga0171462_1002 Ga0171462_1002549 896
20 3300025931 Ga0207644_10000937 Ga0207644_1000093714 896
21 3300028381 Ga0268264_10003317 Ga0268264_100033172 896
22 3300048920 Ga0496117_0000071 Ga0496117_0000071_199705_202560 903
23 iso_pu_bacteria 2895427314 2895436251 906
24 3300048925 Ga0496122_0004523 Ga0496122_0004523_5894_8782 907
25 3300049571 Ga0501034_0000357 Ga0501034_0000357_21980_24736 907
26 3300049742 Ga0501080_0000433 Ga0501080_0000433_1905_4706 907
27 3300025933 Ga0207706_10040782 Ga0207706_100407821 908
28 3300049744 Ga0501083_0030970 Ga0501083_0030970_754_3555 909
29 iso_pu_bacteria 2884763398 2884766706 912
30 iso_pu_bacteria 8054472261 8054479317 912
31 3300005338 Ga0068868_100002534 Ga0068868_1000025349 914
32 3300005843 Ga0068860_100064379 Ga0068860_1000643792 914
33 3300045976 Ga0466967_0037998 Ga0466967_0037998_124_2919 914
34 iso_pu_bacteria 2643221616 2644098016 915
35 iso_pu_bacteria 2643221575 2643887589 917
36 iso_pu_bacteria 2857733635 2857734744 917
37 iso_pu_bacteria 2977264416 2977268023 917
38 3300025908 Ga0207643_10019947 Ga0207643_100199472 919
39 3300026075 Ga0207708_10037228 Ga0207708_100372282 919
40 3300026089 Ga0207648_10028831 Ga0207648_100288312 919
41 iso_pu_bacteria 2808606360 2808849451 920
42 iso_pu_bacteria 2811994871 2812320036 920
43 3300061719 Ga0466962_0017129 Ga0466962_0017129_255_3116 922
44 iso_pu_bacteria 2904509784 2904510782 922
45 iso_pu_bacteria 2933418574 2933422066 922
46 iso_pu_bacteria 2977228692 2977229237 922
47 iso_pu_bacteria 2977236895 2977238725 922
48 iso_pu_bacteria 2984542743 2984543491 922
49 3300049569 Ga0501032_0000208 Ga0501032_0000208_6237_9056 923
50 iso_pu_bacteria 2773857758 2774381303 923
51 iso_pu_bacteria 2857729791 2857730748 923
52 iso_pu_bacteria 2908678064 2908680440 923
53 iso_pu_bacteria 2919069694 2919073123 923
54 iso_pu_bacteria 2919391150 2919394080 923
55 iso_pu_bacteria 2928121344 2928122664 923
56 iso_pu_bacteria 2939674588 2939676501 923
57 3300006038 Ga0075365_10006327 Ga0075365_100063272 924
58 3300048928 Ga0496125_0000192 Ga0496125_0000192_58503_61367 924
59 3300049579 Ga0501043_0039789 Ga0501043_0039789_742_3585 924
60 3300050494 nmdc:mga06z11_11237_c1 nmdc:mga06z11_11237_c1_394_3240 924
61 3300050495 nmdc:mga04h51_3308_c1 nmdc:mga04h51_3308_c1_946_3792 924
62 iso_pu_bacteria 2622736626 2623590411 924
63 iso_pu_bacteria 2643221549 2643766374 924
64 iso_pu_bacteria 2643221619 2644113649 924
65 iso_pu_bacteria 2643221649 2644279157 924
66 3300009148 Ga0105243_10011519 Ga0105243_100115195 925
67 3300049571 Ga0501034_0048461 Ga0501034_0048461_1196_4084 925
68 3300049573 Ga0501037_0030526 Ga0501037_0030526_898_3753 925
69 3300049574 Ga0501038_0013508 Ga0501038_0013508_244_3099 925
70 3300049579 Ga0501043_0005567 Ga0501043_0005567_1729_4617 925
71 3300049581 Ga0501047_0006265 Ga0501047_0006265_4724_7612 925
72 3300049586 Ga0501070_0009300 Ga0501070_0009300_3569_6457 925
73 3300049742 Ga0501080_0000134 Ga0501080_0000134_32393_35281 925
74 iso_pu_bacteria 2821268502 2821271607 925
75 iso_pu_bacteria 2844841374 2844843920 925
76 3300005347 Ga0070668_100030454 Ga0070668_1000304541 926
77 3300009176 Ga0105242_10008077 Ga0105242_100080772 926
78 3300031911 Ga0307412_10022341 Ga0307412_100223412 926
79 3300049574 Ga0501038_0005070 Ga0501038_0005070_5125_7950 926
80 iso_pu_bacteria 2527291627 2528204550 926
81 iso_pu_bacteria 2527291629 2528214472 926
82 iso_pu_bacteria 2546825537 2546949805 926
83 iso_pu_bacteria 2576861822 2579750164 926
84 iso_pu_bacteria 2684623036 2686544154 926
85 iso_pu_bacteria 2710264753 2710605964 926
86 iso_pu_bacteria 2773857924 2774865199 926
87 iso_pu_bacteria 2939598168 2939600457 926
88 iso_pu_bacteria 2939647034 2939649432 926
89 iso_pu_bacteria 637000116 637879343 926
90 3300031456 Ga0307513_10001986 Ga0307513_1000198620 927
91 3300031548 Ga0307408_100006202 Ga0307408_1000062023 927
92 3300031728 Ga0316578_10002793 Ga0316578_100027932 927
93 3300036647 Ga0316582_0000734 Ga0316582_0000734_4809_7667 927
94 3300036712 Ga0316584_0001852 Ga0316584_0001852_9250_12108 927
95 3300049575 Ga0501039_0000155 Ga0501039_0000155_11810_14689 927
96 3300053087 Ga0500643_000383 Ga0500643_000383_687_3518 927
97 iso_pu_bacteria 2857720070 2857721815 927
98 iso_pu_bacteria 2912723979 2912727598 927
99 iso_pu_bacteria 2932426870 2932428559 927
100 iso_pu_bacteria 2945916053 2945919174 927
101 iso_pu_bacteria 8004021418 8004023109 927
102 3300044683 Ga0466965_0000855 Ga0466965_0000855_8583_11429 928
103 iso_pu_bacteria 2554235227 2555231819 928
104 iso_pu_bacteria 2654587600 2655030955 928
105 iso_pu_bacteria 2772190715 2772642038 928
106 iso_pu_bacteria 2833709550 2833712408 928
107 iso_pu_bacteria 2855670206 2855676093 928
108 iso_pu_bacteria 2855676851 2855682591 928
109 iso_pu_bacteria 2857288857 2857294176 928
110 iso_pu_bacteria 2858848962 2858850588 928
111 iso_pu_bacteria 2858882152 2858882839 928
112 iso_pu_bacteria 2858888857 2858895009 928
113 iso_pu_bacteria 2858895516 2858900018 928
114 iso_pu_bacteria 2869068681 2869068745 928
115 iso_pu_bacteria 2880489317 2880490502 928
116 iso_pu_bacteria 2880495981 2880502014 928
117 iso_pu_bacteria 2929226422 2929230543 928
118 iso_pu_bacteria 2995463766 2995464323 928
119 iso_pu_bacteria 8004025490 8004027580 928
120 iso_pu_bacteria 8054704163 8054708543 928
121 iso_pu_bacteria 8054727385 8054734054 928
122 iso_pu_bacteria 8054734606 8054735599 928
123 3300003752 Ga0055539_1000006 Ga0055539_100000621 929
124 3300003756 Ga0055533_1000002 Ga0055533_1000002105 929
125 3300003759 Ga0055525_1000223 Ga0055525_100022326 929
126 3300003841 Ga0055541_1002135 Ga0055541_10021352 929
127 3300005327 Ga0070658_10005284 Ga0070658_100052843 929
128 3300005563 Ga0068855_100016417 Ga0068855_1000164173 929
129 3300025225 Ga0209566_100032 Ga0209566_100032106 929
130 3300025226 Ga0209674_100001 Ga0209674_1000013459 929
131 3300025230 Ga0209563_100001 Ga0209563_1000013459 929
132 3300025253 Ga0209677_100001 Ga0209677_1000013459 929
133 3300031247 Ga0265340_10013099 Ga0265340_100130992 929
134 3300038443 Ga0395901_0009511 Ga0395901_0009511_1820_4777 929
135 3300041452 Ga0451793_0657633 Ga0451793_0657633_11192_14158 929
136 3300048907 Ga0496104_0041406 Ga0496104_0041406_353_3313 929
137 3300048911 Ga0496108_0043874 Ga0496108_0043874_67_2985 929
138 3300048912 Ga0496109_0010429 Ga0496109_0010429_2963_5923 929
139 3300048913 Ga0496110_0002289 Ga0496110_0002289_4119_7079 929
140 3300048914 Ga0496111_0000903 Ga0496111_0000903_1560_4520 929
141 3300048925 Ga0496122_0000116 Ga0496122_0000116_13913_16813 929
142 3300048926 Ga0496123_0000009 Ga0496123_0000009_63192_66092 929
143 3300048927 Ga0496124_0001161 Ga0496124_0001161_33477_36377 929
144 3300048929 Ga0496126_0002773 Ga0496126_0002773_10875_13775 929

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01565

FAD_binding_4

FAD binding domain

72

209

0.97

PF02913

FAD-oxidase_C

FAD linked oxidases, C-terminal domain

296

546

0.96

PF02754

CCG

Cysteine-rich domain

884

966

0.87

PF13534

Fer4_17

4Fe-4S dicluster domain

570

642

0.83

PF02754

CCG

Cysteine-rich domain

748

841

0.77

PF13183

Fer4_8

4Fe-4S dicluster domain

567

641

0.76

PF12838

Fer4_7

4Fe-4S dicluster domain

570

641

0.68

Structural Annotation

Top 5 Hits

ID Description Score Start End
8jdc-assembly1.cif.gz_A crystal structure of mldhd in apo form 0.8777 3 512
8jdt-assembly1.cif.gz_A crystal structure of mldhd in complex with 2-ketobutanoic acid 0.8768 3 512
8jdx-assembly1.cif.gz_A crystal structure of mldhd in complex with 2-ketoisovaleric acid 0.8735 3 512
8jdz-assembly1.cif.gz_A crystal structure of mldhd in complex with 2-keto-3-methylvaleric acid 0.8722 3 512
8jdo-assembly1.cif.gz_A crystal structure of h405a mldhd in complex with d-2-hydroxyhexanoic acid 0.8717 3 512
ID Description Score Start End Superfamily
af_P77748_420_500_3.30.70.2740 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.9497 396 470 3.30.70.2740
af_Q86WU2_7_119_3.30.43.10 Alpha Beta;2-Layer Sandwich;Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2;Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 0.903 1 88 3.30.43.10
af_Q11061_332_414_3.30.70.2740 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.8952 392 474 3.30.70.2740
af_O07406_1_88_3.30.43.10 Alpha Beta;2-Layer Sandwich;Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2;Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 0.8911 8 88 3.30.43.10
af_P84850_67_165_3.30.43.10 Alpha Beta;2-Layer Sandwich;Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2;Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 0.8877 1 88 3.30.43.10
ID Description Score Start End GO Terms
AF-A0A1R3XQV7-F1-model_v4 D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) 0.9792 11 928 GO:0004458
GO:0008720
GO:0046872
GO:0051536
GO:0071949
GO:1903457
AF-A0A2W2ERW7-F1-model_v4 FAD-binding oxidoreductase 0.9784 830 928
AF-A0A6I2XJF1-F1-model_v4 deleted 0.9769 649 929
AF-A0A2W2ERW7-F1-model_v4 FAD-binding oxidoreductase 0.9688 830 928
AF-A0A7K0TJ86-F1-model_v4 D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) 0.9674 6 624 GO:0004458
GO:0008720
GO:0046872
GO:0051536
GO:0071949
GO:1903457

Feature Viewer

pLDDT pTM Quality
89.53 0.88 High
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Predicted Structure (AlphaFold2)

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