F192424

General Info

Members Datasets Scaffolds Average Seq Length
144 107 134 600

Family's Representative Sequence

Representative Sequence 3300039447|Ga0436361_0407150|Ga0436361_0407150_1950_3962
Length 670
Sequence MQKEDLLGGRNTITTKNYEPFVTTVTSQFCQADSKYACKVGVKNDITFWQDGGGRTLPLRSYMRSPLSTTPTRVFDLLSYQQAHFPKTDSLAYKVNGTWIKFSTAEVLSSVEQLACGLHLAGIRAGDKIVNVTDNNRPEWNFVDLAIMTLGAVHVPIYPNASADDYRFILSEAGPKLVFVSNQRLLELIRPIAAEVPDIRNIYTYDEVTGADCWKKVAEAGKTALLDGAVREKLAEARAAVKPEDMATLIYTSGTTGQPKGVMLSHANLVSNALASAEILRSSSHERALSFLPLCHIYERTVVNMYAYVGTSVYYAESLDSIAQNLREVRPNTFTTVPRLLEKIYESILAHGEQLTGLKRSIFFWALNLGLNFDPDAHCPWFKRLELAVADFLVFKKWREAFGGRVSGIISGSAALQPRLARVFWAAGITVWEGYGPTEAAPVISVNRPKTSLHKLGTVGPVIPGGEIKIAEDGEILYRGPNVMMGYYNRPDLTKEAIDPEGWLHTGDLGEMDGPFLKITDRKKEIFKTSGGKYIAPQQVENQLKESRFIAQCIVVGENHKFPAALIVPQFDALRSWLAAQGESVEDRVELAKHPKIIELIQSEIDHCNSRFGRYNQLKKFALLEEEWTIASGELTPTLKLKRKQISKKHASEIAALYEKDELAGATYRR

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
3 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
4 2890737413 Parapedobacter sp. SGR-10 Isolate Rhizosphere
5 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
6 2896344016 Sphingobacterium sp. SGL-16 Isolate Rhizosphere
7 2898713307 Sphingobacterium sp. SGG-5 Isolate Rhizosphere
8 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
9 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
10 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified
11 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
12 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
13 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
14 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
15 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
16 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
17 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
18 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
19 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
20 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
21 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
22 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
23 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
24 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
25 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
26 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
27 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
28 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
29 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
30 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
31 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
32 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
34 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
35 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
38 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
39 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
40 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
43 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
44 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
47 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
48 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
49 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
50 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
51 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
52 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
53 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
54 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
71 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
72 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
73 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
74 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
75 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
76 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
77 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
78 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
79 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
80 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
81 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
82 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
83 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
84 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
85 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
86 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
87 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
88 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
89 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
90 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
91 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
92 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
93 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
94 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
95 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
96 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
97 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
98 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
99 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
100 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
101 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
102 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
103 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
104 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
105 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
106 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
107 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.06
Metatranscriptomes 0
Isolates 6.94

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.39
Nodule 0
Rhizoplane 1.39
Rhizosphere 86.81
Stem 0
Stem Tuber 0
Unclassified 10.42

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1663468 2162886007 Bacteria 272152
2 rootL2_10164982 3300003322 Bacteria 2646
3 Ga0065714_10009324 3300005288 Bacteria 3639
4 Ga0065704_10070133 3300005289 Bacteria 1266035
5 Ga0070658_10009988 3300005327 Bacteria 7625
6 Ga0070676_10000657 3300005328 Bacteria 16815
7 Ga0070680_100006238 3300005336 Bacteria 9045
8 Ga0070660_100013548 3300005339 Bacteria 5853
9 Ga0070673_100001814 3300005364 Bacteria 12745
10 Ga0070713_100003070 3300005436 Bacteria 10979
11 Ga0070708_100076493 3300005445 Bacteria 3023
12 Ga0070678_100001473 3300005456 Bacteria 12547
13 Ga0070662_100000057 3300005457 Bacteria 60160
14 Ga0068867_100013830 3300005459 Bacteria 5712
15 Ga0070706_100159436 3300005467 Bacteria 2106
16 Ga0070698_100003313 3300005471 Bacteria 17719
17 Ga0070698_100007193 3300005471 Bacteria 12057
18 Ga0070697_100007254 3300005536 Bacteria 8624
19 Ga0070697_100034460 3300005536 Bacteria 4082
20 Ga0068853_100035419 3300005539 Bacteria 4240
21 Ga0070665_100002780 3300005548 Bacteria 18969
22 Ga0068855_100000091 3300005563 Bacteria 110526
23 Ga0068855_100019816 3300005563 Bacteria 8082
24 Ga0068856_100135070 3300005614 Bacteria 2472
25 Ga0075366_10004925 3300006195 Bacteria 7204
26 Ga0097621_100000087 3300006237 Bacteria 49983
27 Ga0068871_100000240 3300006358 Bacteria 38671
28 Ga0068871_100021679 3300006358 Bacteria 4943
29 Ga0075434_100005955 3300006871 Bacteria 11160
30 Ga0068865_100017775 3300006881 Bacteria 4578
31 Ga0105240_10000037 3300009093 Bacteria 270462
32 Ga0105240_10005261 3300009093 Bacteria 19321
33 Ga0105240_10087541 3300009093 Bacteria 3814
34 Ga0105243_10000007 3300009148 Bacteria 445042
35 Ga0105241_10002096 3300009174 Bacteria 15054
36 Ga0105242_10012107 3300009176 Bacteria 6637
37 Ga0105237_10000650 3300009545 Bacteria 48489
38 Ga0105237_10001637 3300009545 Bacteria 29074
39 Ga0105238_10009094 3300009551 Bacteria 9942
40 Ga0105239_10002659 3300010375 Bacteria 22517
41 Ga0157371_10002297 3300013102 Bacteria 18421
42 Ga0157371_10004146 3300013102 Bacteria 12780
43 Ga0157370_10045413 3300013104 Bacteria 4215
44 Ga0157369_10000551 3300013105 Bacteria 49137
45 Ga0157374_10000109 3300013296 Bacteria 75410
46 Ga0157374_10000546 3300013296 Bacteria 33583
47 Ga0157378_10002991 3300013297 Bacteria 15022
48 Ga0157378_10127010 3300013297 Bacteria 2357
49 Ga0157372_10000017 3300013307 Bacteria 219543
50 Ga0157375_10006987 3300013308 Bacteria 9856
51 Ga0182008_10014807 3300014497 Bacteria 4079
52 Ga0213873_10001358 3300021358 Bacteria 4031
53 Ga0213876_10001925 3300021384 Bacteria 12443
54 Ga0213875_10000001 3300021388 Bacteria 2793540
55 Ga0207647_10000012 3300025904 Bacteria 152879
56 Ga0207645_10000177 3300025907 Bacteria 51193
57 Ga0207654_10001019 3300025911 Bacteria 15336
58 Ga0207654_10019582 3300025911 Bacteria 3575
59 Ga0207695_10000092 3300025913 Bacteria 270514
60 Ga0207695_10006914 3300025913 Bacteria 14586
61 Ga0207671_10000030 3300025914 Bacteria 248197
62 Ga0207671_10004462 3300025914 Bacteria 13366
63 Ga0207646_10073973 3300025922 Bacteria 3044
64 Ga0207694_10033454 3300025924 Bacteria 3938
65 Ga0207706_10000092 3300025933 Bacteria 93227
66 Ga0207686_10010427 3300025934 Bacteria 5060
67 Ga0207709_10000033 3300025935 Bacteria 320483
68 Ga0207704_10000023 3300025938 Bacteria 142638
69 Ga0207667_10000439 3300025949 Bacteria 55776
70 Ga0207667_10020493 3300025949 Bacteria 7352
71 Ga0207651_10003876 3300025960 Bacteria 7422
72 Ga0207639_10020124 3300026041 Bacteria 4775
73 Ga0207648_10000774 3300026089 Bacteria 36044
74 Ga0268266_10002923 3300028379 Bacteria 17671
75 Ga0307515_10002950 3300028794 Bacteria 36073
76 Ga0307515_10017535 3300028794 Bacteria 13033
77 Ga0307515_10048843 3300028794 Bacteria 6388
78 Ga0265338_10034348 3300028800 Bacteria 4903
79 Ga0265330_10001151 3300031235 Bacteria 15777
80 Ga0265332_10024344 3300031238 Unclassified 2664
81 Ga0265327_10000034 3300031251 Bacteria 316018
82 Ga0265327_10003323 3300031251 Bacteria 15550
83 Ga0265327_10010981 3300031251 Bacteria 6299
84 Ga0265316_10000570 3300031344 Bacteria 41199
85 Ga0307408_100002101 3300031548 Bacteria 14336
86 Ga0307408_100005378 3300031548 Bacteria 8577
87 Ga0307408_100025942 3300031548 Bacteria 4017
88 Ga0265314_10057239 3300031711 Bacteria 2679
89 Ga0265342_10000865 3300031712 Bacteria 30220
90 Ga0307414_10003490 3300032004 Bacteria 8402
91 Ga0307414_10010550 3300032004 Bacteria 5369
92 Ga0307414_10070589 3300032004 Unclassified 2516
93 Ga0307414_10086221 3300032004 Bacteria 2316
94 Ga0307507_10005785 3300033179 Bacteria 19853
95 Ga0307510_10010675 3300033180 Bacteria 10915
96 Ga0395899_0000267 3300037312 Bacteria 68362
97 Ga0395900_0035515 3300037418 Bacteria 5134
98 Ga0436364_0273345 3300037853 Bacteria 2794207
99 Ga0436365_0691418 3300039437 Bacteria 39219
100 Ga0436365_1838882 3300039437 Bacteria 55130
101 Ga0436360_0146389 3300039438 Bacteria 19091
102 Ga0436360_0951118 3300039438 Bacteria 4786
103 Ga0436360_1307205 3300039438 Bacteria 6112
104 Ga0436361_0061962 3300039447 Bacteria 9207
105 Ga0436361_0092668 3300039447 Bacteria 10835
106 Ga0436361_0198070 3300039447 Bacteria 76284
107 Ga0436361_0407150 3300039447 Unclassified 4021
108 Ga0436361_0421403 3300039447 Bacteria 2212
109 Ga0436361_0587140 3300039447 Bacteria 14474
110 Ga0436361_1209694 3300039447 Bacteria 3969
111 Ga0436361_1217600 3300039447 Bacteria 8364
112 Ga0436363_1579316 3300039450 Bacteria 5723
113 Ga0436362_0097441 3300039453 Bacteria 4075
114 Ga0436362_1093954 3300039453 Bacteria 3273
115 Ga0466966_0031055 3300044684 Bacteria 3464
116 Ga0453684_0013281 3300044712 Bacteria 13411
117 Ga0453684_0162088 3300044712 Bacteria 2644
118 Ga0466958_0034018 3300045836 Bacteria 3039
119 Ga0495585_0000585 3300046492 Bacteria 34224
120 Ga0495631_0003150 3300046518 Bacteria 9081
121 Ga0495644_0009968 3300046523 Bacteria 3660
122 Ga0495633_0000388 3300046558 Bacteria 46365
123 Ga0495668_0000127 3300046616 Bacteria 114097
124 Ga0495625_0000691 3300046660 Bacteria 48010
125 Ga0495625_0001121 3300046660 Bacteria 34662
126 Ga0495636_0000001 3300047318 Bacteria 149950
127 Ga0495683_0012889 3300047323 Bacteria 4384
128 Ga0495686_0000299 3300047472 Bacteria 85384
129 Ga0496104_0059546 3300048907 Bacteria 3616
130 Ga0496114_0000297 3300048917 Bacteria 36559
131 Ga0496116_0005710 3300048919 Bacteria 11446
132 Ga0496117_0008943 3300048920 Bacteria 9431
133 Ga0501034_0011764 3300049571 Bacteria 9056
134 Ga0500608_000957 3300053122 Bacteria 10342

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300028794 Ga0307515_10017535 Ga0307515_100175357 524
2 3300032004 Ga0307414_10003490 Ga0307414_100034903 530
3 3300021388 Ga0213875_10000001 Ga0213875_100000011217 532
4 3300005288 Ga0065714_10009324 Ga0065714_100093242 541
5 3300039447 Ga0436361_0421403 Ga0436361_0421403_52_1752 543
6 3300039453 Ga0436362_1093954 Ga0436362_1093954_1508_3238 543
7 3300031548 Ga0307408_100005378 Ga0307408_1000053786 551
8 3300005445 Ga0070708_100076493 Ga0070708_1000764932 555
9 3300013297 Ga0157378_10002991 Ga0157378_100029917 561
10 3300009148 Ga0105243_10000007 Ga0105243_1000000724 566
11 3300025935 Ga0207709_10000033 Ga0207709_10000033121 566
12 3300048919 Ga0496116_0005710 Ga0496116_0005710_6119_7897 566
13 3300048920 Ga0496117_0008943 Ga0496117_0008943_4994_6772 566
14 3300039447 Ga0436361_1217600 Ga0436361_1217600_2803_4593 567
15 3300039438 Ga0436360_0146389 Ga0436360_0146389_17059_18837 569
16 3300006358 Ga0068871_100021679 Ga0068871_1000216792 571
17 3300006871 Ga0075434_100005955 Ga0075434_1000059554 571
18 3300039447 Ga0436361_0198070 Ga0436361_0198070_66278_68122 571
19 3300048907 Ga0496104_0059546 Ga0496104_0059546_479_2233 571
20 3300037853 Ga0436364_0273345 Ga0436364_0273345_1273741_1275543 572
21 3300039447 Ga0436361_0587140 Ga0436361_0587140_11663_13465 572
22 3300003322 rootL2_10164982 rootL2_101649823 573
23 3300021358 Ga0213873_10001358 Ga0213873_100013583 573
24 3300028800 Ga0265338_10034348 Ga0265338_100343482 573
25 3300039438 Ga0436360_1307205 Ga0436360_1307205_1195_3000 573
26 3300039453 Ga0436362_0097441 Ga0436362_0097441_141_1946 573
27 3300031548 Ga0307408_100002101 Ga0307408_10000210111 576
28 3300014497 Ga0182008_10014807 Ga0182008_100148073 577
29 iso_pu_bacteria 2721755487 2722727770 577
30 iso_pu_bacteria 2890737413 2890739498 577
31 iso_pu_bacteria 2904780799 2904781552 577
32 iso_pu_bacteria 2919177583 2919177737 577
33 3300013308 Ga0157375_10006987 Ga0157375_100069872 578
34 3300031235 Ga0265330_10001151 Ga0265330_100011518 578
35 3300031238 Ga0265332_10024344 Ga0265332_100243442 578
36 3300031344 Ga0265316_10000570 Ga0265316_1000057012 578
37 3300031712 Ga0265342_10000865 Ga0265342_1000086511 578
38 iso_pu_bacteria 2837268691 2837271168 578
39 iso_pu_bacteria 2896317667 2896321461 578
40 iso_pu_bacteria 2896344016 2896346718 578
41 iso_pu_bacteria 2898713307 2898716440 578
42 iso_pu_bacteria 3003233435 3003234651 578
43 3300044712 Ga0453684_0013281 Ga0453684_0013281_615_2408 579
44 iso_pu_bacteria 2896344016 2896346278 579
45 3300005436 Ga0070713_100003070 Ga0070713_1000030707 580
46 3300005467 Ga0070706_100159436 Ga0070706_1001594361 580
47 3300005471 Ga0070698_100003313 Ga0070698_1000033132 580
48 3300005471 Ga0070698_100007193 Ga0070698_1000071933 580
49 3300005536 Ga0070697_100007254 Ga0070697_1000072545 580
50 3300005536 Ga0070697_100034460 Ga0070697_1000344601 580
51 3300005614 Ga0068856_100135070 Ga0068856_1001350702 580
52 3300013104 Ga0157370_10045413 Ga0157370_100454132 580
53 3300013105 Ga0157369_10000551 Ga0157369_1000055135 580
54 3300021384 Ga0213876_10001925 Ga0213876_100019252 580
55 3300025922 Ga0207646_10073973 Ga0207646_100739732 580
56 3300031251 Ga0265327_10003323 Ga0265327_1000332316 580
57 3300032004 Ga0307414_10010550 Ga0307414_100105503 580
58 3300032004 Ga0307414_10070589 Ga0307414_100705892 580
59 3300032004 Ga0307414_10086221 Ga0307414_100862212 580
60 3300037312 Ga0395899_0000267 Ga0395899_0000267_37786_39597 580
61 3300039437 Ga0436365_0691418 Ga0436365_0691418_3253_5079 580
62 3300039437 Ga0436365_1838882 Ga0436365_1838882_44040_45923 580
63 3300039438 Ga0436360_0951118 Ga0436360_0951118_2215_4095 580
64 3300039447 Ga0436361_0061962 Ga0436361_0061962_526_2346 580
65 3300039447 Ga0436361_0407150 Ga0436361_0407150_1950_3962 580
66 3300039447 Ga0436361_1209694 Ga0436361_1209694_610_2466 580
67 3300039450 Ga0436363_1579316 Ga0436363_1579316_37_1926 580
68 3300044684 Ga0466966_0031055 Ga0466966_0031055_959_2770 580
69 3300044712 Ga0453684_0162088 Ga0453684_0162088_594_2393 580
70 3300045836 Ga0466958_0034018 Ga0466958_0034018_185_1996 580
71 3300013102 Ga0157371_10004146 Ga0157371_100041463 581
72 3300031251 Ga0265327_10010981 Ga0265327_100109814 581
73 3300006881 Ga0068865_100017775 Ga0068865_1000177753 582
74 3300025934 Ga0207686_10010427 Ga0207686_100104273 582
75 3300031251 Ga0265327_10000034 Ga0265327_10000034273 585
76 3300049571 Ga0501034_0011764 Ga0501034_0011764_672_2447 585
77 3300005328 Ga0070676_10000657 Ga0070676_100006571 586
78 3300005364 Ga0070673_100001814 Ga0070673_1000018148 586
79 3300005456 Ga0070678_100001473 Ga0070678_10000147310 586
80 3300005457 Ga0070662_100000057 Ga0070662_10000005736 586
81 3300005459 Ga0068867_100013830 Ga0068867_1000138303 586
82 3300005539 Ga0068853_100035419 Ga0068853_1000354192 586
83 3300005563 Ga0068855_100000091 Ga0068855_10000009193 586
84 3300006195 Ga0075366_10004925 Ga0075366_100049253 586
85 3300006237 Ga0097621_100000087 Ga0097621_10000008727 586
86 3300006358 Ga0068871_100000240 Ga0068871_10000024016 586
87 3300009093 Ga0105240_10005261 Ga0105240_100052614 586
88 3300009093 Ga0105240_10087541 Ga0105240_100875412 586
89 3300009174 Ga0105241_10002096 Ga0105241_100020962 586
90 3300009176 Ga0105242_10012107 Ga0105242_100121073 586
91 3300009545 Ga0105237_10001637 Ga0105237_100016378 586
92 3300009551 Ga0105238_10009094 Ga0105238_100090946 586
93 3300013102 Ga0157371_10002297 Ga0157371_100022973 586
94 3300013296 Ga0157374_10000109 Ga0157374_1000010953 586
95 3300013296 Ga0157374_10000546 Ga0157374_1000054613 586
96 3300013297 Ga0157378_10127010 Ga0157378_101270102 586
97 3300013307 Ga0157372_10000017 Ga0157372_1000001753 586
98 3300025904 Ga0207647_10000012 Ga0207647_1000001295 586
99 3300025907 Ga0207645_10000177 Ga0207645_1000017733 586
100 3300025911 Ga0207654_10001019 Ga0207654_100010193 586
101 3300025911 Ga0207654_10019582 Ga0207654_100195822 586
102 3300025914 Ga0207671_10004462 Ga0207671_100044628 586
103 3300025924 Ga0207694_10033454 Ga0207694_100334542 586
104 3300025933 Ga0207706_10000092 Ga0207706_1000009236 586
105 3300025938 Ga0207704_10000023 Ga0207704_1000002372 586
106 3300025949 Ga0207667_10000439 Ga0207667_100004395 586
107 3300025960 Ga0207651_10003876 Ga0207651_100038763 586
108 3300026041 Ga0207639_10020124 Ga0207639_100201243 586
109 3300026089 Ga0207648_10000774 Ga0207648_1000077426 586
110 3300028794 Ga0307515_10002950 Ga0307515_1000295022 586
111 3300028794 Ga0307515_10048843 Ga0307515_100488434 586
112 3300033179 Ga0307507_10005785 Ga0307507_100057856 586
113 3300033180 Ga0307510_10010675 Ga0307510_100106752 586
114 3300039447 Ga0436361_0092668 Ga0436361_0092668_3348_5162 586
115 3300046492 Ga0495585_0000585 Ga0495585_0000585_17862_19676 586
116 3300046518 Ga0495631_0003150 Ga0495631_0003150_693_2507 586
117 3300046523 Ga0495644_0009968 Ga0495644_0009968_1331_3145 586
118 3300046558 Ga0495633_0000388 Ga0495633_0000388_30875_32689 586
119 3300046616 Ga0495668_0000127 Ga0495668_0000127_97985_99799 586
120 3300046660 Ga0495625_0000691 Ga0495625_0000691_36084_37898 586
121 3300046660 Ga0495625_0001121 Ga0495625_0001121_17908_19722 586
122 3300047323 Ga0495683_0012889 Ga0495683_0012889_1880_3694 586
123 3300047472 Ga0495686_0000299 Ga0495686_0000299_47259_49073 586
124 3300053122 Ga0500608_000957 Ga0500608_000957_5817_7631 586
125 3300005327 Ga0070658_10009988 Ga0070658_100099881 587
126 3300005336 Ga0070680_100006238 Ga0070680_1000062381 587
127 3300005339 Ga0070660_100013548 Ga0070660_1000135482 587
128 3300005563 Ga0068855_100019816 Ga0068855_1000198162 587
129 3300025949 Ga0207667_10020493 Ga0207667_100204931 587
130 3300031548 Ga0307408_100025942 Ga0307408_1000259422 587
131 3300037418 Ga0395900_0035515 Ga0395900_0035515_2409_4190 587
132 3300005548 Ga0070665_100002780 Ga0070665_1000027806 589
133 3300009093 Ga0105240_10000037 Ga0105240_10000037213 589
134 3300009545 Ga0105237_10000650 Ga0105237_100006502 589
135 3300010375 Ga0105239_10002659 Ga0105239_1000265913 589
136 3300025913 Ga0207695_10000092 Ga0207695_1000009233 589
137 3300025913 Ga0207695_10006914 Ga0207695_100069147 589
138 3300025914 Ga0207671_10000030 Ga0207671_100000305 589
139 3300028379 Ga0268266_10002923 Ga0268266_100029236 589
140 3300031711 Ga0265314_10057239 Ga0265314_100572392 589
141 3300047318 Ga0495636_0000001 Ga0495636_0000001_113774_115552 589
142 3300048917 Ga0496114_0000297 Ga0496114_0000297_10751_12532 589
143 2162886007 SwRhRL2b_contig_1663468 SwRhRL2b_0819.00004360 590
144 3300005289 Ga0065704_10070133 Ga0065704_100701331168 590

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF23562

524

662

0.8

PF00501

AMP-binding

AMP-binding enzyme

78

488

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
3wvn-assembly2.cif.gz_B complex structure of vinn with l-aspartate 0.9049 4 441
3wv5-assembly2.cif.gz_B complex structure of vinn with 3-methylaspartate 0.9025 4 446
3wv5-assembly2.cif.gz_B complex structure of vinn with 3-methylaspartate 0.8834 4 446
3wv4-assembly2.cif.gz_B crystal structure of vinn 0.881 4 448
3ivr-assembly1.cif.gz_B crystal structure of putative long-chain-fatty-acid coa ligase from rhodopseudomonas palustris cga009 0.8771 4 452
ID Description Score Start End Superfamily
af_Q4CT79_2_96_2.30.38.10 Mainly Beta;Roll;Luciferase; domain 3;Luciferase; Domain 3 0.9548 384 454 2.30.38.10
5u95D03 Mainly Beta;Roll;Luciferase; domain 3;Luciferase; Domain 3 0.9494 389 452 2.30.38.10
2d1qA01 Mainly Beta;Roll;Luciferase; domain 3;Luciferase; Domain 3 0.9373 386 452 2.30.38.10
af_P9WQ53_285_415_2.30.38.10 Mainly Beta;Roll;Luciferase; domain 3;Luciferase; Domain 3 0.924 322 452 2.30.38.10
af_O53521_461_600_3.30.300.30 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;ANL, C-terminal domain 0.9235 454 590 3.30.300.30
ID Description Score Start End GO Terms
AF-A0A3C0RBX2-F1-model_v4 Long-chain fatty acid--CoA ligase 0.9637 7 280 GO:0004467
GO:0016020
AF-A0A3C0RBX2-F1-model_v4 Long-chain fatty acid--CoA ligase 0.9369 7 280 GO:0004467
GO:0016020
AF-A0A120J1P4-F1-model_v4 deleted 0.9164 470 590
AF-A0A2H5ZX81-F1-model_v4 Long-chain-fatty-acid--CoA ligase FadD15 (EC 6.2.1.3) 0.914 364 590 GO:0004467
GO:0016020
AF-A0A7X8FWM1-F1-model_v4 AMP-binding protein 0.9096 1 280

Feature Viewer

pLDDT pTM Quality
91.43 0.79 High
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Predicted Structure (AlphaFold2)

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