F191165

General Info

Members Datasets Scaffolds Average Seq Length
144 118 136 901

Family's Representative Sequence

Representative Sequence 3300005548|Ga0070665_100000193|Ga0070665_10000019374
Length 1068
Sequence MSTELPKNYDPAAIEAATYKAWLDEKCFHAEPSDSGEPYAIVIPPPNVTGALHLGHAINNTLQDILTRKARMEGKNALWIPGLDHAGIATQAVVEKTIKEKEGKDRYSLGPTKEASREELIRRIWEWKQQYGDRILSQLQRLGCSCDWDRTRFTLDDMCAKAVRETFFKLFKDGLVYRGKRLVNWDTHLQTSISNDEIYHEKVKTNLWHIRYEIVDDASPSPRRGRGEREPNQSLVHHGVDESDGAFLESFASDPDSEINLPNDNQPDDAPRPTHMTVATTRPETLLGDTAVAVHSQDPRWNWAIGKSVKLPLTGRLIPIIADDVLVDPTFGSGVVKVTPAHDPNDYAVYERHLKLPDAIAIINILNPDGTLNENAGPYAGLYRNKSREKVVADLEAAGLLAKVEPYETEVGHSDRSKTPVEPYLSDQWFVKMAPLAEPALEVVRDGTIKFFPERHAQQYLSWLGEKRDWPISRQLWWGHRIPVWSNRDIEKAADAHDEFDRGNSFGLVMEGVFYECFRTVPSEEQRKILIDSGFSEDPDVLDTWFSSALWPFSTLGWPEKTPAMDKWYPTSVLLTGRDIITLWVARMVMMGMYNLGNAEGRMQNAESNSAEGLANSINFGAEQYHDPIHSPKRNEAEMAGHDPQIQQPNDNDVPHPAKKSAANLRALGVPFAHVAINPTILDGKGERMSKSKGNGVDPVDIIDTHGADALRFTLSTMATETQDVRMPVKKDAEGRNTSDKFDMGRNFCNKLWNAARFLFSNLDVGRDGNRAASGDGPAGLPSRPTLPPYPKDEELTLADRWIVTRFARTLADANAAIASYRFDLYAKVCYDFFWGDYCDWYLEIIKPALKTPAGVVQLAVAFDVLDGVLRLLHPVTPFITEVIWEKLNELDPERLKCKRTSKRLCKSDWARMPPIDEQSEHIFPRLQAIIGAIRNLRSENGVDPRKPITVYIAPPGEDAVRLTKQNVGLIETMAICKVAAIQSNLPAPANTVRVTVNNDCDLYLEGLVDPAAEAARAEKRRGELTKQIAALKGRLSNEGYVAKAPPKLIQESRDQLTAAEAELAKLG

Samples

Sample ID Description Type Environment
1 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
2 2895498888 Pseudoxanthomonas sp. SGD-10 Isolate Rhizosphere
3 2895511927 Pseudoxanthomonas sp. SGD-5-1 Isolate Rhizosphere
4 2895522137 Pseudoxanthomonas sp. SGNA-20 Isolate Rhizosphere
5 2895525241 Pseudoxanthomonas sp. SGT-18 Isolate Rhizosphere
6 2941489479 Lysobacter enzymogenes 2943 Isolate Rhizosphere
7 2995948881 Lysobacter enzymogenes B25 Isolate Unclassified
8 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
9 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
10 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
11 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
12 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
13 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
14 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
15 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
16 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
17 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
18 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
19 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
20 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
21 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
26 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
27 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
28 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
29 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
30 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
31 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
32 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
33 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
34 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
35 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
36 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
37 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
38 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
39 3300015689 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A02 Metagenome Rhizosphere
40 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
41 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
42 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
43 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
44 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
45 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
46 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
47 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
57 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
58 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
59 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
60 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
61 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
62 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
63 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
64 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
65 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
66 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
67 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
68 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
69 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
70 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
71 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
72 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
73 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
74 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
75 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
76 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
77 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
78 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
79 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
80 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
81 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
82 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
83 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
84 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
85 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
86 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
87 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
88 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
89 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
90 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
101 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
102 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
103 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
104 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
105 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
106 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
107 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
108 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
109 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
111 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
112 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
113 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
114 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
115 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
116 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
117 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
118 8002745576 Marinomonas spartinae USM8 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.75
Metatranscriptomes 0.69
Isolates 5.56

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.58
Nodule 0
Rhizoplane 3.47
Rhizosphere 75
Stem 0
Stem Tuber 0
Unclassified 6.94

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055526_1000005 3300003771 Bacteria 344542
2 Ga0055526_1000202 3300003771 Bacteria 51431
3 Ga0055537_1000324 3300003773 Bacteria 32547
4 Ga0055524_1000005 3300003775 Bacteria 344542
5 Ga0055524_1000144 3300003775 Bacteria 84213
6 Ga0055534_1000002 3300003784 Bacteria 390762
7 Ga0055528_1000002 3300003790 Bacteria 368879
8 Ga0070666_10002127 3300005335 Bacteria 12040
9 Ga0070674_100016233 3300005356 Bacteria 4666
10 Ga0070667_100003802 3300005367 Bacteria 12837
11 Ga0070703_10002699 3300005406 Bacteria 5094
12 Ga0070705_100000109 3300005440 Bacteria 46841
13 Ga0070694_100008312 3300005444 Bacteria 6348
14 Ga0070681_10019648 3300005458 Bacteria 6765
15 Ga0070699_100018053 3300005518 Bacteria 6060
16 Ga0070695_100001497 3300005545 Bacteria 12964
17 Ga0070665_100000193 3300005548 Bacteria 108142
18 Ga0068863_100002011 3300005841 Bacteria 20169
19 Ga0068860_100002933 3300005843 Bacteria 17657
20 Ga0068860_100011556 3300005843 Bacteria 8703
21 Ga0068862_100002857 3300005844 Bacteria 15137
22 Ga0081540_1003374 3300005983 Bacteria 12663
23 Ga0081539_10013173 3300005985 Bacteria 6261
24 Ga0081539_10022273 3300005985 Bacteria 4198
25 Ga0075430_100031585 3300006846 Bacteria 4495
26 Ga0075431_100028583 3300006847 Bacteria 5732
27 Ga0075431_100049221 3300006847 Bacteria 4346
28 Ga0105248_10008840 3300009177 Bacteria 11066
29 Ga0105249_10001711 3300009553 Bacteria 19191
30 Ga0099796_10000272 3300010159 Bacteria 8184
31 Ga0157369_10084359 3300013105 Bacteria 3396
32 Ga0157374_10002798 3300013296 Bacteria 14651
33 Ga0157378_10091066 3300013297 Bacteria 2772
34 Ga0157375_10003361 3300013308 Bacteria 13868
35 Ga0157379_10000524 3300014968 Bacteria 31068
36 Ga0157376_10000900 3300014969 Bacteria 19432
37 Ga0183360_10001 3300015689 Bacteria 3943671
38 Ga0213872_10000445 3300021361 Bacteria 33820
39 Ga0213876_10000097 3300021384 Bacteria 99326
40 Ga0213876_10000494 3300021384 Bacteria 30841
41 Ga0209565_1000001 3300025263 Bacteria 2950419
42 Ga0209565_1002608 3300025263 Bacteria 6380
43 Ga0209673_1000001 3300025273 Bacteria 3176258
44 Ga0209675_1000001 3300025291 Bacteria 2950293
45 Ga0209675_1000845 3300025291 Bacteria 20028
46 Ga0209564_1000001 3300025295 Bacteria 3176258
47 Ga0209564_1000187 3300025295 Bacteria 146950
48 Ga0209256_1000006 3300025299 Bacteria 1250310
49 Ga0209256_1000055 3300025299 Bacteria 295530
50 Ga0209257_1000078 3300025304 Bacteria 317483
51 Ga0207695_10000215 3300025913 Bacteria 155235
52 Ga0207667_10027622 3300025949 Bacteria 6174
53 Ga0207712_10001148 3300025961 Bacteria 18461
54 Ga0207641_10017757 3300026088 Bacteria 5829
55 Ga0207674_10006042 3300026116 Bacteria 14320
56 Ga0268266_10000441 3300028379 Bacteria 62071
57 Ga0268266_10013574 3300028379 Bacteria 7016
58 Ga0268265_10001561 3300028380 Bacteria 18974
59 Ga0268264_10030187 3300028381 Bacteria 4444
60 Ga0265337_1000963 3300028556 Bacteria 15083
61 Ga0265760_10000022 3300031090 Bacteria 68294
62 Ga0307513_10005418 3300031456 Bacteria 16866
63 Ga0316576_10004492 3300031727 Bacteria 8382
64 Ga0316576_10009660 3300031727 Bacteria 6241
65 Ga0316577_10019942 3300031733 Bacteria 3714
66 Ga0307507_10016013 3300033179 Bacteria 8765
67 Ga0307510_10020505 3300033180 Bacteria 7723
68 Ga0316582_0033300 3300036647 Bacteria 3164
69 Ga0316584_0000836 3300036712 Bacteria 17377
70 Ga0316584_0015268 3300036712 Bacteria 5489
71 Ga0316584_0047339 3300036712 Bacteria 3212
72 Ga0395900_0125276 3300037418 Bacteria 2635
73 Ga0400490_16304 3300038726 Bacteria 35224
74 Ga0436365_1278013 3300039437 Bacteria 31325
75 Ga0436365_1423688 3300039437 Bacteria 102720
76 Ga0436360_1219190 3300039438 Bacteria 24194
77 Ga0436361_0614637 3300039447 Bacteria 17052
78 Ga0436361_0723519 3300039447 Bacteria 39014
79 Ga0451577_0000566 3300042876 Bacteria 60294
80 Ga0466964_0004699 3300044706 Bacteria 5046
81 Ga0453684_0000090 3300044712 Bacteria 391614
82 Ga0451576_0000149 3300045051 Bacteria 178125
83 Ga0451576_0000885 3300045051 Bacteria 56916
84 Ga0495629_0007773 3300046459 Bacteria 7891
85 Ga0495639_0013071 3300046475 Bacteria 3583
86 Ga0495585_0000747 3300046492 Bacteria 28843
87 Ga0495630_0040619 3300046517 Bacteria 3477
88 Ga0495665_0013505 3300046531 Bacteria 4414
89 Ga0495658_0000419 3300046683 Bacteria 23779
90 Ga0495669_0000511 3300046684 Bacteria 17642
91 Ga0495613_0001121 3300046689 Bacteria 20386
92 Ga0495581_0009531 3300047315 Bacteria 5619
93 Ga0495636_0003702 3300047318 Bacteria 5944
94 Ga0495686_0001300 3300047472 Bacteria 28151
95 Ga0496102_0048147 3300048905 Bacteria 3876
96 Ga0496104_0000841 3300048907 Bacteria 26491
97 Ga0496109_0003891 3300048912 Bacteria 12470
98 Ga0496110_0000478 3300048913 Bacteria 27140
99 Ga0496114_0038003 3300048917 Bacteria 3983
100 Ga0501031_0003484 3300049568 Bacteria 10101
101 Ga0501031_0010781 3300049568 Bacteria 5954
102 Ga0501032_0030165 3300049569 Bacteria 3720
103 Ga0501034_0025204 3300049571 Bacteria 6053
104 Ga0501034_0106708 3300049571 Bacteria 2794
105 Ga0501039_0040298 3300049575 Bacteria 3606
106 Ga0501040_0026274 3300049576 Bacteria 3915
107 Ga0501041_0006615 3300049577 Bacteria 6788
108 Ga0501043_0001829 3300049579 Bacteria 18264
109 Ga0501046_0051024 3300049580 Bacteria 3266
110 Ga0501047_0000010 3300049581 Bacteria 429357
111 Ga0501047_0019570 3300049581 Bacteria 6495
112 Ga0501048_0000554 3300049582 Bacteria 26430
113 Ga0501068_0003409 3300049584 Bacteria 8552
114 Ga0501068_0017137 3300049584 Bacteria 4186
115 Ga0501073_0008143 3300049589 Bacteria 7777
116 Ga0501075_0009969 3300049591 Bacteria 6660
117 Ga0501076_0043476 3300049592 Bacteria 3540
118 Ga0501077_0003953 3300049593 Bacteria 8939
119 Ga0501079_0042456 3300049741 Bacteria 3511
120 Ga0501079_0078496 3300049741 Bacteria 2553
121 Ga0501080_0000100 3300049742 Bacteria 58925
122 Ga0501080_0041338 3300049742 Bacteria 4296
123 Ga0501080_0069466 3300049742 Bacteria 3276
124 Ga0501081_0004459 3300049743 Bacteria 8978
125 Ga0501083_0003285 3300049744 Bacteria 11293
126 Ga0501083_0023298 3300049744 Bacteria 4295
127 Ga0501035_0011139 3300049822 Bacteria 8330
128 Ga0501044_0000355 3300049823 Bacteria 57341
129 Ga0501044_0024918 3300049823 Bacteria 6344
130 nmdc:mga06r32_35744_c1 3300050510 Bacteria 4688
131 Ga0495601_0012481 3300053077 Bacteria 5097
132 Ga0500647_0000403 3300053091 Bacteria 11217
133 Ga0500562_000531 3300053108 Bacteria 9254
134 Ga0500572_000085 3300053111 Bacteria 29577
135 Ga0500645_000502 3300053730 Bacteria 26442
136 Ga0530510_0004352 3300061734 Bacteria 9805

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049742 Ga0501080_0069466 Ga0501080_0069466_773_3094 701
2 3300049576 Ga0501040_0026274 Ga0501040_0026274_95_2791 774
3 3300049584 Ga0501068_0017137 Ga0501068_0017137_1321_4017 774
4 3300049741 Ga0501079_0078496 Ga0501079_0078496_61_2526 774
5 3300049744 Ga0501083_0023298 Ga0501083_0023298_108_2804 774
6 3300049568 Ga0501031_0003484 Ga0501031_0003484_6010_8706 776
7 3300049569 Ga0501032_0030165 Ga0501032_0030165_931_3627 776
8 3300049589 Ga0501073_0008143 Ga0501073_0008143_4737_7433 776
9 3300049822 Ga0501035_0011139 Ga0501035_0011139_104_2800 776
10 3300048912 Ga0496109_0003891 Ga0496109_0003891_9917_12445 784
11 3300028556 Ga0265337_1000963 Ga0265337_10009634 794
12 3300006846 Ga0075430_100031585 Ga0075430_1000315852 798
13 3300021384 Ga0213876_10000494 Ga0213876_1000049415 800
14 3300039437 Ga0436365_1278013 Ga0436365_1278013_16199_18928 800
15 3300021384 Ga0213876_10000097 Ga0213876_1000009748 805
16 3300037418 Ga0395900_0125276 Ga0395900_0125276_34_2601 805
17 3300039437 Ga0436365_1423688 Ga0436365_1423688_51801_54602 805
18 3300046689 Ga0495613_0001121 Ga0495613_0001121_7908_10565 805
19 3300036712 Ga0316584_0000836 Ga0316584_0000836_1149_3728 808
20 3300049575 Ga0501039_0040298 Ga0501039_0040298_91_2772 808
21 3300031727 Ga0316576_10004492 Ga0316576_100044922 810
22 3300031733 Ga0316577_10019942 Ga0316577_100199422 810
23 3300039438 Ga0436360_1219190 Ga0436360_1219190_16289_18970 814
24 3300036647 Ga0316582_0033300 Ga0316582_0033300_377_3040 817
25 3300036712 Ga0316584_0047339 Ga0316584_0047339_345_3008 817
26 3300033179 Ga0307507_10016013 Ga0307507_100160137 818
27 3300048917 Ga0496114_0038003 Ga0496114_0038003_1134_3722 819
28 3300033180 Ga0307510_10020505 Ga0307510_100205054 820
29 3300031727 Ga0316576_10009660 Ga0316576_100096602 822
30 3300049571 Ga0501034_0025204 Ga0501034_0025204_88_2772 822
31 3300049579 Ga0501043_0001829 Ga0501043_0001829_12244_14928 822
32 3300049581 Ga0501047_0000010 Ga0501047_0000010_166232_168916 822
33 3300049581 Ga0501047_0019570 Ga0501047_0019570_206_3115 822
34 3300049582 Ga0501048_0000554 Ga0501048_0000554_7753_10437 822
35 3300049742 Ga0501080_0000100 Ga0501080_0000100_1355_4039 822
36 3300049744 Ga0501083_0003285 Ga0501083_0003285_8506_11190 822
37 3300049823 Ga0501044_0000355 Ga0501044_0000355_17948_20857 822
38 3300049823 Ga0501044_0024918 Ga0501044_0024918_1639_4323 822
39 3300005843 Ga0068860_100002933 Ga0068860_1000029334 825
40 3300053077 Ga0495601_0012481 Ga0495601_0012481_500_3370 825
41 iso_pu_bacteria 2816332139 2816508693 825
42 3300005985 Ga0081539_10013173 Ga0081539_100131732 827
43 3300005985 Ga0081539_10022273 Ga0081539_100222731 827
44 3300045051 Ga0451576_0000149 Ga0451576_0000149_109204_112182 828
45 3300005983 Ga0081540_1003374 Ga0081540_10033745 829
46 3300031090 Ga0265760_10000022 Ga0265760_1000002251 829
47 3300044706 Ga0466964_0004699 Ga0466964_0004699_13_2739 830
48 3300046684 Ga0495669_0000511 Ga0495669_0000511_5050_7731 830
49 3300049577 Ga0501041_0006615 Ga0501041_0006615_2375_5128 830
50 3300049591 Ga0501075_0009969 Ga0501075_0009969_230_2983 830
51 3300049592 Ga0501076_0043476 Ga0501076_0043476_129_2882 830
52 3300049741 Ga0501079_0042456 Ga0501079_0042456_548_3301 830
53 3300049743 Ga0501081_0004459 Ga0501081_0004459_3655_6408 830
54 3300005548 Ga0070665_100000193 Ga0070665_10000019374 831
55 3300028379 Ga0268266_10000441 Ga0268266_1000044138 831
56 3300053730 Ga0500645_000502 Ga0500645_000502_20012_22783 832
57 3300049571 Ga0501034_0106708 Ga0501034_0106708_58_2751 833
58 3300013297 Ga0157378_10091066 Ga0157378_100910661 834
59 3300042876 Ga0451577_0000566 Ga0451577_0000566_5757_8402 834
60 3300044712 Ga0453684_0000090 Ga0453684_0000090_266515_269160 834
61 3300045051 Ga0451576_0000885 Ga0451576_0000885_24187_26832 834
62 3300046459 Ga0495629_0007773 Ga0495629_0007773_5196_7823 834
63 3300046475 Ga0495639_0013071 Ga0495639_0013071_435_3062 834
64 3300046517 Ga0495630_0040619 Ga0495630_0040619_164_2791 834
65 3300046531 Ga0495665_0013505 Ga0495665_0013505_219_2846 834
66 3300046683 Ga0495658_0000419 Ga0495658_0000419_478_3105 834
67 3300047315 Ga0495581_0009531 Ga0495581_0009531_1769_4396 834
68 3300013105 Ga0157369_10084359 Ga0157369_100843592 836
69 3300025913 Ga0207695_10000215 Ga0207695_10000215119 836
70 3300003771 Ga0055526_1000202 Ga0055526_10002023 840
71 3300003775 Ga0055524_1000144 Ga0055524_100014458 840
72 3300025291 Ga0209675_1000845 Ga0209675_100084516 840
73 3300025295 Ga0209564_1000187 Ga0209564_100018730 840
74 3300025299 Ga0209256_1000055 Ga0209256_1000055261 840
75 3300006847 Ga0075431_100028583 Ga0075431_1000285834 841
76 3300005356 Ga0070674_100016233 Ga0070674_1000162332 842
77 3300005458 Ga0070681_10019648 Ga0070681_100196483 843
78 3300038726 Ga0400490_16304 Ga0400490_16304_22319_25567 844
79 3300049584 Ga0501068_0003409 Ga0501068_0003409_4508_7201 844
80 3300036712 Ga0316584_0015268 Ga0316584_0015268_2295_5078 848
81 3300053091 Ga0500647_0000403 Ga0500647_0000403_4403_7063 848
82 3300053111 Ga0500572_000085 Ga0500572_000085_6630_9290 848
83 3300031456 Ga0307513_10005418 Ga0307513_100054188 849
84 3300053108 Ga0500562_000531 Ga0500562_000531_6431_9097 849
85 3300025949 Ga0207667_10027622 Ga0207667_100276226 854
86 3300039447 Ga0436361_0614637 Ga0436361_0614637_10438_13254 856
87 3300039447 Ga0436361_0723519 Ga0436361_0723519_18459_21275 856
88 3300021361 Ga0213872_10000445 Ga0213872_1000044511 858
89 3300005406 Ga0070703_10002699 Ga0070703_100026992 859
90 3300005440 Ga0070705_100000109 Ga0070705_10000010916 859
91 3300005444 Ga0070694_100008312 Ga0070694_1000083123 859
92 3300005518 Ga0070699_100018053 Ga0070699_1000180534 859
93 3300005545 Ga0070695_100001497 Ga0070695_1000014976 859
94 3300005844 Ga0068862_100002857 Ga0068862_1000028577 859
95 3300009553 Ga0105249_10001711 Ga0105249_1000171113 859
96 3300025961 Ga0207712_10001148 Ga0207712_1000114813 859
97 3300026116 Ga0207674_10006042 Ga0207674_100060424 859
98 3300028380 Ga0268265_10001561 Ga0268265_1000156113 859
99 3300048905 Ga0496102_0048147 Ga0496102_0048147_167_3049 859
100 3300006847 Ga0075431_100049221 Ga0075431_1000492212 862
101 3300050510 nmdc:mga06r32_35744_c1 nmdc:mga06r32_35744_c1_310_3201 862
102 3300046492 Ga0495585_0000747 Ga0495585_0000747_16547_19378 865
103 3300005335 Ga0070666_10002127 Ga0070666_100021279 869
104 3300005367 Ga0070667_100003802 Ga0070667_1000038029 869
105 3300005841 Ga0068863_100002011 Ga0068863_10000201113 869
106 3300005843 Ga0068860_100011556 Ga0068860_1000115564 869
107 3300009177 Ga0105248_10008840 Ga0105248_100088405 869
108 3300013296 Ga0157374_10002798 Ga0157374_100027983 869
109 3300013308 Ga0157375_10003361 Ga0157375_100033615 869
110 3300014969 Ga0157376_10000900 Ga0157376_100009009 869
111 3300026088 Ga0207641_10017757 Ga0207641_100177573 869
112 3300028379 Ga0268266_10013574 Ga0268266_100135745 869
113 3300028381 Ga0268264_10030187 Ga0268264_100301872 869
114 3300048907 Ga0496104_0000841 Ga0496104_0000841_538_3327 869
115 3300010159 Ga0099796_10000272 Ga0099796_100002723 870
116 3300014968 Ga0157379_10000524 Ga0157379_1000052423 870
117 3300048913 Ga0496110_0000478 Ga0496110_0000478_13776_16565 870
118 3300049580 Ga0501046_0051024 Ga0501046_0051024_269_3064 873
119 3300049593 Ga0501077_0003953 Ga0501077_0003953_4110_6905 873
120 3300049742 Ga0501080_0041338 Ga0501080_0041338_1119_3914 873
121 3300061734 Ga0530510_0004352 Ga0530510_0004352_5833_8628 873
122 3300047472 Ga0495686_0001300 Ga0495686_0001300_18946_21753 878
123 3300049568 Ga0501031_0010781 Ga0501031_0010781_1194_4004 883
124 iso_pu_bacteria 8002745576 8002748957 890
125 3300047318 Ga0495636_0003702 Ga0495636_0003702_2267_5059 893
126 3300025263 Ga0209565_1002608 Ga0209565_10026085 894
127 iso_pu_bacteria 2895498888 2895501396 895
128 iso_pu_bacteria 2895511927 2895514539 895
129 iso_pu_bacteria 2895522137 2895523979 895
130 iso_pu_bacteria 2895525241 2895527467 895
131 iso_pu_bacteria 2941489479 2941493454 897
132 iso_pu_bacteria 2995948881 2995949885 897
133 3300025304 Ga0209257_1000078 Ga0209257_1000078308 898
134 3300015689 Ga0183360_10001 Ga0183360_100013157 899
135 3300003771 Ga0055526_1000005 Ga0055526_100000578 901
136 3300003773 Ga0055537_1000324 Ga0055537_10003246 901
137 3300003775 Ga0055524_1000005 Ga0055524_100000579 901
138 3300003784 Ga0055534_1000002 Ga0055534_1000002251 901
139 3300003790 Ga0055528_1000002 Ga0055528_1000002251 901
140 3300025263 Ga0209565_1000001 Ga0209565_1000001700 901
141 3300025273 Ga0209673_1000001 Ga0209673_1000001700 901
142 3300025291 Ga0209675_1000001 Ga0209675_10000011832 901
143 3300025295 Ga0209564_1000001 Ga0209564_10000011994 901
144 3300025299 Ga0209256_1000006 Ga0209256_1000006430 901

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF10458

Val_tRNA-synt_C

Valyl tRNA synthetase tRNA binding arm

1010

1068

0.96

PF00133

tRNA-synt_1

tRNA synthetases class I (I, L, M and V)

661

728

0.95

PF00133

tRNA-synt_1

tRNA synthetases class I (I, L, M and V)

17

600

0.93

PF08264

Anticodon_1

Anticodon-binding domain of tRNA ligase

800

953

0.88

PF09334

tRNA-synt_1g

tRNA synthetases class I (M)

39

117

0.85

PF09334

tRNA-synt_1g

tRNA synthetases class I (M)

656

752

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
1wka-assembly1.cif.gz_A structural basis for non-cognate amino acid discrimination by the valyl-trna synthetase editing domain 0.9573 183 325
1wka-assembly1.cif.gz_A structural basis for non-cognate amino acid discrimination by the valyl-trna synthetase editing domain 0.9508 183 325
4xkz-assembly1.cif.gz_A crystal structure of the c-terminal anticodon loop binding domain of a valyl-trna synthetase from pseudomonas aeruginosa 0.9242 595 829
3mq1-assembly1.cif.gz_A crystal structure of dust mite allergen der p 5 0.9214 830 897
4k48-assembly1.cif.gz_A structure of the streptococcus pneumoniae leucyl-trna synthetase editing domain 0.8921 185 321
ID Description Score Start End Superfamily
af_Q2FXR8_200_287_3.90.740.10 Alpha Beta;Alpha-Beta Complex;Isoleucyl-tRNA Synthetase; domain 2;Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 1 189 274 3.90.740.10
af_A0A0P0XWD3_309_435_3.90.740.10 Alpha Beta;Alpha-Beta Complex;Isoleucyl-tRNA Synthetase; domain 2;Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.9899 191 315 3.90.740.10
af_Q86KU2_315_433_3.90.740.10 Alpha Beta;Alpha-Beta Complex;Isoleucyl-tRNA Synthetase; domain 2;Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.9866 185 292 3.90.740.10
af_A0A0R0FN16_22_167_3.90.740.10 Alpha Beta;Alpha-Beta Complex;Isoleucyl-tRNA Synthetase; domain 2;Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.9725 181 325 3.90.740.10
af_O14160_232_372_3.90.740.10 Alpha Beta;Alpha-Beta Complex;Isoleucyl-tRNA Synthetase; domain 2;Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.9721 185 321 3.90.740.10
ID Description Score Start End GO Terms
AF-A0A351TXW3-F1-model_v4 valine--tRNA ligase (EC 6.1.1.9) (Valyl-tRNA synthetase) 0.9867 199 325 GO:0002161
GO:0004832
GO:0005524
GO:0005829
GO:0006438
AF-A0A7S1HK68-F1-model_v4 valine--tRNA ligase (EC 6.1.1.9) (Valyl-tRNA synthetase) 0.9789 209 351 GO:0002161
GO:0004832
GO:0005524
GO:0005829
GO:0006438
AF-A0A641V653-F1-model_v4 deleted 0.9684 195 294
AF-A0A4Q0IZ98-F1-model_v4 deleted 0.9587 196 320
AF-A0A383A7Q7-F1-model_v4 valine--tRNA ligase (EC 6.1.1.9) (Valyl-tRNA synthetase) 0.9496 491 737 GO:0004832
GO:0005524
GO:0005829
GO:0006438

Feature Viewer

pLDDT pTM Quality
87.14 0.79 High
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Predicted Structure (AlphaFold2)

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