F187480

General Info

Members Datasets Scaffolds Average Seq Length
143 119 113 947

Family's Representative Sequence

Representative Sequence 3300003316|rootH1_10052275|rootH1_100522751
Length 971
Sequence MTATEEAAAQAELLENVIATAQRLIKKAARDGATITPALIAEKVQKAAATFDEGGPSPVDQSKAVNLLIQRNSHWVGRSTTLKDDKNHVDWLTAARKRDWHYWRRYRDFLESKLSDAVVDGLNEATDDILGLLEDPKRSDDWDRRGLVVGHVQSGKTSNYSGLICKAADAGYKIIIVLAGMHNNLRSQTQMRLEEGFLGYETTVNRDPGMPIGVAEFGEDLKTNSATTRAENGDFNKAIAKHFHGISPEERPWLFVVKKEKSVLTALLNWIQTRVADTVDAESKRKVVTKLPLLMIDDEADHASVDTGEQKFNDDGTPDEEHQPKTINSLIRQVLHAFTRKAYVGYTATPFANIFIHHKGATSKEGPDLFPRSFIINLAAPSNYVGPAKMFGRMTKEGRKGALPLSRDIKDHYDPETDSGWMPPKHNKAHIPTYNGQETIPPSLREAICAFVLACAVRELRGQGDQHSSMLIHVTRLVDVQNQVREQVEEAVRRMRQKITRGIDADALLDEMRKLWEKDLLPARDQVAELSPVEERPPAMPSWEEVLSVLPDLLDDIEVRSINGTAKDALDYATPGAALKVIAVGGDKLARGLTLEGLCVSYFVRTTKMYDTLMQMGRWFGYRPGYLDLCRLYTSPDLVKWFGHIADASEELREEFDYMSDANLTPEQYGLKVMSHEVLTVTSPLKMRNSKTLSLTYSGTRPQTILFHRDAKIQERNLGATDALIASLGSAWKQDGLKYDRDGDPDSWPNARVWKNVDADKVLSFLDAYLTHPNATSAKAALLSEFIGKMIDDGQLTQWSVALLGGGLGKGDSHTFPGGEASSAYSMRKTEDSEDPSRLDANSFAIGVLTDPKDEGIDLDDEAWRVALASTRAAWKPDPARGRVTLPDFPSGKGIREARRKLGGDANRGLLLLYPLTPYFYKDKTPERLIVPGWSKPIMAFAIAFPGSDRPIEVEYEVNLLYWMQEYGPSE

Samples

Sample ID Description Type Environment
1 2511231012 Pseudomonas sp. GM33 Isolate Nodule
2 2511231016 Pseudomonas sp. GM50 Isolate Nodule
3 2511231024 Pseudomonas sp. GM84 Isolate Nodule
4 2513237166 Paraburkholderia azotifigens UYPR1.413 Isolate Nodule
5 2515154113 Rhizobium ruizarguesonis Vc2 Isolate Nodule
6 2551306084 Sinorhizobium meliloti 5A14 Isolate Nodule
7 2582581304 Rhizobium sp. YR519 Isolate Rhizosphere
8 2599185300 Pseudomonas sp. NFACC39-1 Isolate Rhizoplane
9 2600255318 Pseudomonas putida NFIX47 Isolate Rhizoplane
10 2603880185 Pseudomonas sp. NFIX46 Isolate Rhizoplane
11 2603880199 Pseudomonas sp. NFIX49 Isolate Rhizoplane
12 2615840698 Rhizobium multihospitium HAMBI 2975 Isolate Nodule
13 2687453257 Planctomyces sp. SH-PL62 Isolate Unclassified
14 2713897148 Pseudomonas fluorescens SF39a Isolate Rhizosphere
15 2808606418 Herbaspirillum sp. SJZ107 Isolate Rhizosphere
16 2816332133 Acidovorax radicis 2721A Isolate Unclassified
17 2857558681 Duganella sp. R-74565 Isolate Unclassified
18 2869278585 Mesorhizobium sp. M8A.F.Ca.ET.198.01.1.1 Isolate Nodule
19 2871451962 Mesorhizobium sp. M7A.F.Ca.US.006.01.1.1 Isolate Nodule
20 2899259804 Paracoccus aeridis JC501 Isolate Rhizosphere
21 2906660503 Bradyrhizobium brasilense UFLA 03-321 Isolate Unclassified
22 2919166419 Agrobacterium cavarae 2074 Isolate Unclassified
23 2932809354 Bradyrhizobium sp. S3.5.5 Isolate Nodule
24 2937822353 Mesorhizobium neociceri CCANP35 Isolate Nodule
25 2957505466 Sinorhizobium meliloti USDA1696 Isolate Nodule
26 2958034702 Mesorhizobium sp. M8A.F.Ca.ET.202.01.1.1 Isolate Nodule
27 2958041894 Mesorhizobium sp. M00.F.Ca.ET.149.01.1.1 Isolate Nodule
28 2970593180 Mesorhizobium sp. M8A.F.Ca.ET.197.01.1.1 Isolate Nodule
29 2979100975 Agrobacterium pusense SORGH_AS 755 Isolate Unclassified
30 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
31 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
32 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
33 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
34 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
35 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
36 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
37 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
38 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
39 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
40 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
41 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
42 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
43 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
44 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
45 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
46 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
47 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
48 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
49 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
50 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
51 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
52 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
53 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
54 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
55 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
56 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
60 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
61 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
68 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
71 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
72 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
73 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
74 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
75 3300042009 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z071817_5348 Metagenome Rhizosphere
76 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
77 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
78 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
79 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
80 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
81 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
82 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
83 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
84 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
85 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
86 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
87 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
88 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
89 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
90 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
91 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
92 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
93 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
94 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
95 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
96 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
97 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
98 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
99 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
100 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
101 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
102 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
103 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
104 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
105 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
106 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
107 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
108 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
109 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
110 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
113 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
114 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
115 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
116 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
117 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
118 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
119 8005570704 Rhizobium anhuiense bv. trifolii WYCCWR10015 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 79.02
Metatranscriptomes 0
Isolates 20.98

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.89
Nodule 13.99
Rhizoplane 2.8
Rhizosphere 58.04
Stem 0
Stem Tuber 0
Unclassified 13.29

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10052275 3300003316 Bacteria 3137
2 rootH2_10023386 3300003320 Bacteria 35038
3 rootH1_10003347 3300003323 Bacteria 19564
4 Ga0055533_1001046 3300003756 Bacteria 7989
5 Ga0055527_1000506 3300003760 Bacteria 13818
6 Ga0055528_1001453 3300003790 Bacteria 14453
7 Ga0055541_1000302 3300003841 Bacteria 16438
8 Ga0058692_1001160 3300003856 Bacteria 10147
9 Ga0065165_1005632 3300005262 Bacteria 6930
10 Ga0065714_10003309 3300005288 Bacteria 10323
11 Ga0065714_10065423 3300005288 Bacteria 10167
12 Ga0070670_100003153 3300005331 Bacteria 13635
13 Ga0068855_100114429 3300005563 Bacteria 3093
14 Ga0075432_10000314 3300006058 Bacteria 13640
15 Ga0075370_10000193 3300006353 Bacteria 21403
16 Ga0079104_1000047 3300006946 Bacteria 182563
17 Ga0079104_1000898 3300006946 Bacteria 24200
18 Ga0105251_10001074 3300009011 Bacteria 23881
19 Ga0105251_10002832 3300009011 Bacteria 13110
20 Ga0105251_10005657 3300009011 Bacteria 8118
21 Ga0105244_10003084 3300009036 Bacteria 12193
22 Ga0105250_10001785 3300009092 Bacteria 11270
23 Ga0105240_10009201 3300009093 Bacteria 14010
24 Ga0105238_10002222 3300009551 Bacteria 19587
25 Ga0105239_10000540 3300010375 Bacteria 54714
26 Ga0105246_10001398 3300011119 Bacteria 14274
27 Ga0157370_10011748 3300013104 Bacteria 9144
28 Ga0157369_10001247 3300013105 Bacteria 31703
29 Ga0157369_10006886 3300013105 Bacteria 13118
30 Ga0182005_1000692 3300015265 Bacteria 15720
31 Ga0163161_10002330 3300017792 Bacteria 13610
32 Ga0209566_100765 3300025225 Bacteria 17340
33 Ga0209674_100484 3300025226 Bacteria 16947
34 Ga0209672_100725 3300025228 Bacteria 16231
35 Ga0209673_1001683 3300025273 Bacteria 18883
36 Ga0209256_1001811 3300025299 Bacteria 20083
37 Ga0207696_1001805 3300025711 Bacteria 11055
38 Ga0207655_1003399 3300025728 Bacteria 11884
39 Ga0207713_1000809 3300025735 Bacteria 29001
40 Ga0207713_1004165 3300025735 Bacteria 9492
41 Ga0207695_10001281 3300025913 Bacteria 42714
42 Ga0207694_10007456 3300025924 Bacteria 8292
43 Ga0207650_10000880 3300025925 Bacteria 22734
44 Ga0209281_1000012 3300027111 Bacteria 684886
45 Ga0209281_1000919 3300027111 Bacteria 24431
46 Ga0209371_1002504 3300027312 Bacteria 10173
47 Ga0268264_10011311 3300028381 Bacteria 7372
48 Ga0268256_1000831 3300030500 Bacteria 21976
49 Ga0265327_10002573 3300031251 Bacteria 18776
50 Ga0395905_0005255 3300037471 Bacteria 13247
51 Ga0436361_0417624 3300039447 Bacteria 3620
52 Ga0439432_000451 3300042006 Bacteria 15316
53 Ga0439451_000120 3300042009 Bacteria 14319
54 Ga0466969_0000272 3300044656 Bacteria 28299
55 Ga0453684_0000113 3300044712 Bacteria 359598
56 Ga0453684_0000967 3300044712 Bacteria 94647
57 Ga0453684_0047139 3300044712 Bacteria 5720
58 Ga0466957_0001610 3300044842 Bacteria 11838
59 Ga0495591_001634 3300046458 Bacteria 13526
60 Ga0495638_0008043 3300046460 Bacteria 7510
61 Ga0495653_0003154 3300046463 Bacteria 13223
62 Ga0495650_0004949 3300046471 Bacteria 8889
63 Ga0495583_0002286 3300046506 Bacteria 16764
64 Ga0495631_0002813 3300046518 Bacteria 9664
65 Ga0495637_0000972 3300046520 Bacteria 18189
66 Ga0495637_0001008 3300046520 Bacteria 17756
67 Ga0495637_0001415 3300046520 Bacteria 14167
68 Ga0495643_0001147 3300046522 Bacteria 25938
69 Ga0495643_0001564 3300046522 Bacteria 20382
70 Ga0495643_0002110 3300046522 Bacteria 16414
71 Ga0495644_0000311 3300046523 Bacteria 22468
72 Ga0495648_0000712 3300046524 Bacteria 35479
73 Ga0495642_0000477 3300046528 Bacteria 20542
74 Ga0495654_0001584 3300046530 Bacteria 15442
75 Ga0495597_0000102 3300046542 Bacteria 76204
76 Ga0495597_0000300 3300046542 Bacteria 44515
77 Ga0495597_0001920 3300046542 Bacteria 14054
78 Ga0495633_0002096 3300046558 Bacteria 14334
79 Ga0495668_0002815 3300046616 Bacteria 13838
80 Ga0495611_0000513 3300046648 Bacteria 22997
81 Ga0495661_0000534 3300046665 Bacteria 39177
82 Ga0495661_0002415 3300046665 Bacteria 14392
83 Ga0495661_0006735 3300046665 Bacteria 8061
84 Ga0495669_0000585 3300046684 Bacteria 16189
85 Ga0495649_0001393 3300046694 Bacteria 18248
86 Ga0495589_0000091 3300046794 Bacteria 85670
87 Ga0495604_0002282 3300047317 Bacteria 15360
88 Ga0495604_0002528 3300047317 Bacteria 14586
89 Ga0495681_0000076 3300047470 Bacteria 89319
90 Ga0495681_0001525 3300047470 Bacteria 17272
91 Ga0495681_0006088 3300047470 Bacteria 7973
92 Ga0495626_0000362 3300048091 Bacteria 47538
93 Ga0495626_0003247 3300048091 Bacteria 10525
94 Ga0496118_0010223 3300048921 Bacteria 9315
95 Ga0496119_0001197 3300048922 Bacteria 32441
96 Ga0496120_0000818 3300048923 Bacteria 44506
97 Ga0496121_0007600 3300048924 Bacteria 13042
98 Ga0496121_0011074 3300048924 Bacteria 10063
99 Ga0496124_0003948 3300048927 Bacteria 17719
100 Ga0496124_0005135 3300048927 Bacteria 14903
101 Ga0496124_0007148 3300048927 Bacteria 11949
102 Ga0496125_0005245 3300048928 Bacteria 14528
103 Ga0496126_0001477 3300048929 Bacteria 36534
104 Ga0495682_0003325 3300049460 Bacteria 7179
105 Ga0501047_0003456 3300049581 Bacteria 14926
106 Ga0501035_0003494 3300049822 Bacteria 15025
107 Ga0501044_0026497 3300049823 Bacteria 6135
108 nmdc:mga07m45_556_c1 3300050496 Bacteria 14887
109 Ga0500643_000713 3300053087 Bacteria 22002
110 Ga0500566_0000559 3300053094 Bacteria 20914
111 Ga0500618_001299 3300053125 Bacteria 11447
112 Ga0500619_000019 3300053154 Bacteria 52899
113 Ga0500645_004525 3300053730 Bacteria 5306

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048922 Ga0496119_0001197 Ga0496119_0001197_27402_30149 849
2 iso_pu_bacteria 2906660503 2906664884 861
3 iso_pu_bacteria 2932809354 2932815702 861
4 iso_pu_bacteria 2600255318 2601796564 866
5 iso_pu_bacteria 2603880185 2606073713 866
6 iso_pu_bacteria 2603880199 2606126643 866
7 iso_pu_bacteria 2713897148 2715750265 866
8 3300010375 Ga0105239_10000540 Ga0105239_1000054032 867
9 3300053094 Ga0500566_0000559 Ga0500566_0000559_6166_8874 867
10 3300009092 Ga0105250_10001785 Ga0105250_100017856 870
11 3300025711 Ga0207696_1001805 Ga0207696_10018054 870
12 3300048924 Ga0496121_0011074 Ga0496121_0011074_3961_6699 870
13 3300053730 Ga0500645_004525 Ga0500645_004525_770_3514 872
14 3300013105 Ga0157369_10006886 Ga0157369_100068864 875
15 3300044712 Ga0453684_0000113 Ga0453684_0000113_276760_279534 878
16 3300003323 rootH1_10003347 rootH1_100033477 881
17 3300044712 Ga0453684_0000967 Ga0453684_0000967_29280_32039 881
18 3300044656 Ga0466969_0000272 Ga0466969_0000272_13420_16350 888
19 3300048927 Ga0496124_0003948 Ga0496124_0003948_1359_4136 898
20 3300046542 Ga0495597_0000102 Ga0495597_0000102_48398_51256 907
21 3300046794 Ga0495589_0000091 Ga0495589_0000091_32301_35159 907
22 iso_pu_bacteria 2687453257 2688070364 909
23 3300046665 Ga0495661_0000534 Ga0495661_0000534_6102_8960 910
24 3300048091 Ga0495626_0000362 Ga0495626_0000362_13873_16731 910
25 3300047470 Ga0495681_0000076 Ga0495681_0000076_66202_69060 912
26 3300037471 Ga0395905_0005255 Ga0395905_0005255_5378_8242 916
27 3300046528 Ga0495642_0000477 Ga0495642_0000477_4802_7654 922
28 3300009011 Ga0105251_10001074 Ga0105251_1000107413 924
29 3300025735 Ga0207713_1000809 Ga0207713_100080914 924
30 3300013105 Ga0157369_10001247 Ga0157369_1000124721 926
31 3300046506 Ga0495583_0002286 Ga0495583_0002286_7291_10149 926
32 3300046522 Ga0495643_0001147 Ga0495643_0001147_7017_9851 926
33 3300048091 Ga0495626_0003247 Ga0495626_0003247_4326_7184 926
34 3300046665 Ga0495661_0006735 Ga0495661_0006735_5217_8042 927
35 3300047470 Ga0495681_0006088 Ga0495681_0006088_3467_6325 927
36 iso_pu_bacteria 2551306084 2551679247 927
37 iso_pu_bacteria 2957505466 2957508001 927
38 3300048929 Ga0496126_0001477 Ga0496126_0001477_19887_22763 929
39 iso_pu_bacteria 2511231024 2511373383 931
40 3300003856 Ga0058692_1001160 Ga0058692_10011605 932
41 3300027312 Ga0209371_1002504 Ga0209371_10025045 932
42 3300030500 Ga0268256_1000831 Ga0268256_10008315 932
43 3300046524 Ga0495648_0000712 Ga0495648_0000712_11930_14842 932
44 iso_pu_bacteria 2615840698 2616555119 934
45 3300005563 Ga0068855_100114429 Ga0068855_1001144292 935
46 iso_pu_bacteria 2515154113 2515638401 935
47 iso_pu_bacteria 2816332133 2816474212 935
48 iso_pu_bacteria 2869278585 2869285731 935
49 iso_pu_bacteria 2871451962 2871452758 935
50 iso_pu_bacteria 2958034702 2958041746 935
51 iso_pu_bacteria 2958041894 2958050277 935
52 iso_pu_bacteria 2970593180 2970600347 935
53 3300046616 Ga0495668_0002815 Ga0495668_0002815_2279_5134 936
54 3300053087 Ga0500643_000713 Ga0500643_000713_9534_12437 936
55 iso_pu_bacteria 2937822353 2937827680 936
56 3300009551 Ga0105238_10002222 Ga0105238_1000222210 937
57 3300025924 Ga0207694_10007456 Ga0207694_100074562 937
58 3300028381 Ga0268264_10011311 Ga0268264_100113112 937
59 iso_pu_bacteria 2511231016 2511326498 937
60 iso_pu_bacteria 2582581304 2585255882 937
61 iso_pu_bacteria 2808606418 2809146892 937
62 iso_pu_bacteria 2899259804 2899260820 937
63 iso_pu_bacteria 2919166419 2919168370 937
64 iso_pu_bacteria 2979100975 2979101784 937
65 iso_pu_bacteria 8005570704 8005577234 937
66 3300031251 Ga0265327_10002573 Ga0265327_100025736 938
67 3300048924 Ga0496121_0007600 Ga0496121_0007600_5006_7915 940
68 3300003790 Ga0055528_1001453 Ga0055528_10014538 941
69 3300006946 Ga0079104_1000898 Ga0079104_100089815 941
70 3300013104 Ga0157370_10011748 Ga0157370_100117482 941
71 3300015265 Ga0182005_1000692 Ga0182005_10006926 941
72 3300025273 Ga0209673_1001683 Ga0209673_10016838 941
73 3300025299 Ga0209256_1001811 Ga0209256_10018115 941
74 3300027111 Ga0209281_1000919 Ga0209281_100091914 941
75 3300042006 Ga0439432_000451 Ga0439432_000451_6784_9651 941
76 3300046460 Ga0495638_0008043 Ga0495638_0008043_3326_6193 941
77 3300046520 Ga0495637_0001415 Ga0495637_0001415_6744_9611 941
78 3300046523 Ga0495644_0000311 Ga0495644_0000311_12593_15460 941
79 3300048923 Ga0496120_0000818 Ga0496120_0000818_35687_38587 941
80 3300053125 Ga0500618_001299 Ga0500618_001299_3769_6663 941
81 iso_pu_bacteria 2857558681 2857559401 941
82 3300005288 Ga0065714_10003309 Ga0065714_100033096 942
83 3300009011 Ga0105251_10005657 Ga0105251_100056572 942
84 3300009036 Ga0105244_10003084 Ga0105244_100030845 942
85 3300009093 Ga0105240_10009201 Ga0105240_100092015 942
86 3300017792 Ga0163161_10002330 Ga0163161_100023305 942
87 3300025728 Ga0207655_1003399 Ga0207655_10033995 942
88 3300025913 Ga0207695_10001281 Ga0207695_1000128131 942
89 3300044712 Ga0453684_0047139 Ga0453684_0047139_2088_4997 942
90 3300046522 Ga0495643_0001564 Ga0495643_0001564_9076_11928 942
91 3300046684 Ga0495669_0000585 Ga0495669_0000585_8081_10990 942
92 3300049460 Ga0495682_0003325 Ga0495682_0003325_2287_5196 943
93 3300005288 Ga0065714_10065423 Ga0065714_100654235 944
94 3300006058 Ga0075432_10000314 Ga0075432_100003145 944
95 3300046522 Ga0495643_0002110 Ga0495643_0002110_8096_10972 944
96 3300048928 Ga0496125_0005245 Ga0496125_0005245_6399_9275 944
97 iso_pu_bacteria 2513237166 2514051934 944
98 3300006946 Ga0079104_1000047 Ga0079104_1000047151 945
99 3300027111 Ga0209281_1000012 Ga0209281_1000012595 945
100 3300046542 Ga0495597_0000300 Ga0495597_0000300_36538_39396 945
101 3300048927 Ga0496124_0005135 Ga0496124_0005135_7994_10852 945
102 3300006353 Ga0075370_10000193 Ga0075370_100001939 946
103 3300048921 Ga0496118_0010223 Ga0496118_0010223_3127_6015 946
104 3300050496 nmdc:mga07m45_556_c1 nmdc:mga07m45_556_c1_3508_6387 946
105 3300003320 rootH2_10023386 rootH2_1002338618 947
106 3300005262 Ga0065165_1005632 Ga0065165_10056323 948
107 3300009011 Ga0105251_10002832 Ga0105251_100028325 948
108 3300025735 Ga0207713_1004165 Ga0207713_10041653 948
109 3300039447 Ga0436361_0417624 Ga0436361_0417624_292_3186 948
110 3300046463 Ga0495653_0003154 Ga0495653_0003154_5274_8183 948
111 3300047317 Ga0495604_0002528 Ga0495604_0002528_5159_8068 948
112 3300048927 Ga0496124_0007148 Ga0496124_0007148_5039_7948 948
113 3300046520 Ga0495637_0001008 Ga0495637_0001008_8624_11533 949
114 3300046520 Ga0495637_0000972 Ga0495637_0000972_9978_12893 962
115 3300046694 Ga0495649_0001393 Ga0495649_0001393_9986_12901 962
116 iso_pu_bacteria 2511231012 2511303681 965
117 iso_pu_bacteria 2599185300 2599930473 965
118 3300053154 Ga0500619_000019 Ga0500619_000019_49494_52436 967
119 3300046518 Ga0495631_0002813 Ga0495631_0002813_6012_8921 968
120 3300046542 Ga0495597_0001920 Ga0495597_0001920_6036_8945 968
121 3300046558 Ga0495633_0002096 Ga0495633_0002096_2994_5903 968
122 3300046648 Ga0495611_0000513 Ga0495611_0000513_6597_9506 968
123 3300046665 Ga0495661_0002415 Ga0495661_0002415_4104_7013 968
124 3300003756 Ga0055533_1001046 Ga0055533_10010463 969
125 3300003760 Ga0055527_1000506 Ga0055527_10005067 969
126 3300003841 Ga0055541_1000302 Ga0055541_100030211 969
127 3300005331 Ga0070670_100003153 Ga0070670_1000031534 969
128 3300011119 Ga0105246_10001398 Ga0105246_100013986 969
129 3300025225 Ga0209566_100765 Ga0209566_10076512 969
130 3300025226 Ga0209674_100484 Ga0209674_10048412 969
131 3300025228 Ga0209672_100725 Ga0209672_1007254 969
132 3300025925 Ga0207650_10000880 Ga0207650_1000088013 969
133 3300042009 Ga0439451_000120 Ga0439451_000120_5170_8079 969
134 3300044842 Ga0466957_0001610 Ga0466957_0001610_1243_4161 969
135 3300046458 Ga0495591_001634 Ga0495591_001634_5323_8232 969
136 3300046471 Ga0495650_0004949 Ga0495650_0004949_5066_7975 969
137 3300046530 Ga0495654_0001584 Ga0495654_0001584_5280_8189 969
138 3300047317 Ga0495604_0002282 Ga0495604_0002282_6538_9450 969
139 3300047470 Ga0495681_0001525 Ga0495681_0001525_9089_11998 969
140 3300049581 Ga0501047_0003456 Ga0501047_0003456_6667_9576 969
141 3300049822 Ga0501035_0003494 Ga0501035_0003494_3609_6518 969
142 3300049823 Ga0501044_0026497 Ga0501044_0026497_1777_4686 969
143 3300003316 rootH1_10052275 rootH1_100522751 971

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF10593

Z1

Z1 domain

443

680

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
3iuy-assembly2.cif.gz_B crystal structure of ddx53 dead-box domain 0.6692 144 349
2oxc-assembly2.cif.gz_B human dead-box rna helicase ddx20, dead domain in complex with adp 0.6687 144 349
1vec-assembly1.cif.gz_A crystal structure of the n-terminal domain of rck/p54, a human dead-box protein 0.6662 144 350
1qde-assembly1.cif.gz_A crystal structure of the atpase domain of translation initiation factor 4a from saccharomyces cerevisiae-the prototype of the dead box protein family 0.6542 144 350
1t6n-assembly1.cif.gz_B crystal structure of the n-terminal domain of human uap56 0.6383 144 348
ID Description Score Start End Superfamily
1hv8B01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.6918 144 350 3.40.50.300
af_Q54TT7_154_312_3.40.30.10 Alpha Beta;3-Layer(aba) Sandwich;Glutaredoxin;Glutaredoxin 0.6796 441 490 3.40.30.10
af_Q2WF63_15_295_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.677 144 349 3.40.50.300
3iuyB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.6692 144 349 3.40.50.300
af_Q21226_128_190_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.6687 17 65 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A5N9VVF1-F1-model_v4 deleted 0.9387 68 258
AF-A0A5N9VVF1-F1-model_v4 deleted 0.9155 68 258
AF-T1AVA5-F1-model_v4 Putative endonuclease, Z1 domain protein 0.9153 439 592 GO:0004519
AF-A0A2N2Z283-F1-model_v4 Endonuclease 0.8958 13 519 GO:0004519
AF-T1AVA5-F1-model_v4 Putative endonuclease, Z1 domain protein 0.8932 439 592 GO:0004519

Feature Viewer

pLDDT pTM Quality
79.63 0.64 Medium
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Predicted Structure (AlphaFold2)

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