F187340

General Info

Members Datasets Scaffolds Average Seq Length
142 105 284 362

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8002811521|8002812290
Length 401
Sequence INDPEPIRFLDAEGTFAPSESAQEYLAEIEALDTEEVQEWYRAMVRARAFDTECTNLQRQGQLALWAPSLGQEGCQAGLAFAAEPQDHLFPAYREHLVADVRGVSMLDLAAQFRGLTHGGWDVNDPKNGNFHLYTLVLGAQAQHSQGFALGMVLEAKLKAGDNALDPGEAGTPTDAAVISFYGDGTTSQGDANEALVFAQSYQSPTVFVVQNNQYAISVPVARQSRTPIYRRAVGFGIPAVQIDGNDALAAYAVGKRFMRHAREGHGPSYIEALTYRIGAHTTSDDPTRYRENEELDSWRQKDPIVRLAGYLRSKGVPEEFFETVDAEATAHARTIRDEILALPPIDTTEMFDHVYAEQHPRIDEQREWALQYEASYDDQAAAPSPAPVASGSGQKGNRAA

Samples

Sample ID Description Type Environment
1 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
5 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
8 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
9 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
13 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
14 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
15 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
16 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
17 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
18 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
19 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
20 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
21 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
22 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
23 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
24 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
25 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
26 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
27 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
28 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
40 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
41 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
42 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
43 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
44 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
45 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
46 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
47 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
48 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
49 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
50 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
51 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
52 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
53 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
54 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
55 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
56 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
57 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
58 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
59 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
60 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
61 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
62 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
63 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
64 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
65 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
66 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
67 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
68 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
69 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
70 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
71 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
72 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
73 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
74 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
75 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
76 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
77 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
78 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
79 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
80 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
81 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
82 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
83 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
84 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
85 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
86 8002811521 Leucobacter chinensis NC76-1 Isolate Rhizosphere
87 2585428094 Herbiconiux sp. YR403 Isolate Rhizosphere
88 2643221549 Agromyces sp. Root1464 Isolate Unclassified
89 2643221572 Leifsonia sp. Root60 Isolate Unclassified
90 2643221619 Agromyces sp. Root81 Isolate Unclassified
91 2643221632 Leifsonia sp. Root112D2 Isolate Unclassified
92 2643221649 Leifsonia sp. Root4 Isolate Unclassified
93 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
94 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
95 2808606372 Agromyces sp. 23-23 Isolate Unclassified
96 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
97 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
98 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
99 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
100 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
101 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
102 2966921586 Rathayibacter agropyri 617 Isolate Rhizosphere
103 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere
104 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
105 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 85.92
Metatranscriptomes 0
Isolates 14.08

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.52
Nodule 0
Rhizoplane 10.56
Rhizosphere 69.72
Stem 0
Stem Tuber 0
Unclassified 2.82

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10104363 3300003320 Bacteria 4638
2 rootH1_10124561 3300003323 Bacteria 5872
3 Ga0065714_10070720 3300005288 Bacteria 3785
4 Ga0070691_10118574 3300005341 Bacteria 1330
5 Ga0070675_100026140 3300005354 Bacteria 4683
6 Ga0070714_100166443 3300005435 Bacteria 1998
7 Ga0070708_100019458 3300005445 Bacteria 5704
8 Ga0070708_100076134 3300005445 Bacteria 3030
9 Ga0070706_100000135 3300005467 Bacteria 92156
10 Ga0070706_100005245 3300005467 Bacteria 12357
11 Ga0070706_100015557 3300005467 Bacteria 7027
12 Ga0070706_100015874 3300005467 Bacteria 6953
13 Ga0070707_100008811 3300005468 Bacteria 9360
14 Ga0070707_100021660 3300005468 Bacteria 6076
15 Ga0070707_100104172 3300005468 Bacteria 2750
16 Ga0070707_100148067 3300005468 Bacteria 2285
17 Ga0070698_100025941 3300005471 Bacteria 6105
18 Ga0070698_100052418 3300005471 Unclassified 4150
19 Ga0070698_100083983 3300005471 Unclassified 3173
20 Ga0070699_100019699 3300005518 Bacteria 5814
21 Ga0070699_100058701 3300005518 Unclassified 3333
22 Ga0070697_100003419 3300005536 Bacteria 12206
23 Ga0070697_100015103 3300005536 Bacteria 6063
24 Ga0068852_100263078 3300005616 Bacteria 1657
25 Ga0068863_100024079 3300005841 Bacteria 5808
26 Ga0070717_10000632 3300006028 Bacteria 22642
27 Ga0070717_10004100 3300006028 Bacteria 10507
28 Ga0070717_10009278 3300006028 Bacteria 7394
29 Ga0097621_100042689 3300006237 Bacteria 3654
30 Ga0068871_100034596 3300006358 Bacteria 4010
31 Ga0075429_100293910 3300006880 Bacteria 1422
32 Ga0111539_10089602 3300009094 Bacteria 3615
33 Ga0105245_10002411 3300009098 Bacteria 16914
34 Ga0105241_10052301 3300009174 Bacteria 3118
35 Ga0105242_10252669 3300009176 Bacteria 1589
36 Ga0105237_10136138 3300009545 Bacteria 2451
37 Ga0157369_10000935 3300013105 Bacteria 37105
38 Ga0157369_10061806 3300013105 Bacteria 4037
39 Ga0157369_10425708 3300013105 Bacteria 1376
40 Ga0157380_10005552 3300014326 Bacteria 8820
41 Ga0157376_10098249 3300014969 Bacteria 2552
42 Ga0213876_10007352 3300021384 Bacteria 5992
43 Ga0207688_10025153 3300025901 Bacteria 3268
44 Ga0207684_10000046 3300025910 Bacteria 251569
45 Ga0207684_10007375 3300025910 Bacteria 9916
46 Ga0207684_10013784 3300025910 Bacteria 6983
47 Ga0207684_10024870 3300025910 Bacteria 5102
48 Ga0207684_10026093 3300025910 Bacteria 4980
49 Ga0207654_10129085 3300025911 Bacteria 1598
50 Ga0207671_10072271 3300025914 Bacteria 2574
51 Ga0207646_10002646 3300025922 Bacteria 21032
52 Ga0207646_10003016 3300025922 Bacteria 19395
53 Ga0207646_10044919 3300025922 Bacteria 3965
54 Ga0207646_10094387 3300025922 Unclassified 2679
55 Ga0207646_10180095 3300025922 Bacteria 1909
56 Ga0207687_10069314 3300025927 Bacteria 2515
57 Ga0207667_10098234 3300025949 Bacteria 3022
58 Ga0207668_10023970 3300025972 Bacteria 3932
59 Ga0207678_10232008 3300026067 Bacteria 1580
60 Ga0207641_10011462 3300026088 Bacteria 7277
61 Ga0207648_10018782 3300026089 Bacteria 6250
62 Ga0265319_1000390 3300028563 Bacteria 31768
63 Ga0265318_10001491 3300028577 Bacteria 13674
64 Ga0265318_10001595 3300028577 Bacteria 13113
65 Ga0265338_10026006 3300028800 Bacteria 5918
66 Ga0265330_10000304 3300031235 Bacteria 35488
67 Ga0265332_10021304 3300031238 Bacteria 2863
68 Ga0265328_10025071 3300031239 Bacteria 2249
69 Ga0265320_10000383 3300031240 Bacteria 35880
70 Ga0265325_10002446 3300031241 Bacteria 12546
71 Ga0265340_10000489 3300031247 Bacteria 21667
72 Ga0265331_10000453 3300031250 Bacteria 39694
73 Ga0265316_10001786 3300031344 Bacteria 22688
74 Ga0265316_10005926 3300031344 Bacteria 11768
75 Ga0307408_100072009 3300031548 Bacteria 2558
76 Ga0265313_10000026 3300031595 Bacteria 134612
77 Ga0265313_10000370 3300031595 Bacteria 48777
78 Ga0265314_10000684 3300031711 Bacteria 41154
79 Ga0265342_10000340 3300031712 Bacteria 52275
80 Ga0316576_10002123 3300031727 Bacteria 11156
81 Ga0307414_10321750 3300032004 Bacteria 1317
82 Ga0307507_10044615 3300033179 Bacteria 4379
83 Ga0373925_0241229 3300037068 Bacteria 1447
84 Ga0436364_0142162 3300037853 Bacteria 8094
85 Ga0436364_1198871 3300037853 Bacteria 2039
86 Ga0436365_0342365 3300039437 Bacteria 7225
87 Ga0436365_0369263 3300039437 Bacteria 11239
88 Ga0436365_0656444 3300039437 Bacteria 7503
89 Ga0436365_1041077 3300039437 Bacteria 1759
90 Ga0436365_1490228 3300039437 Bacteria 2727
91 Ga0436365_1547899 3300039437 Bacteria 4755
92 Ga0451807_0049902 3300041486 Bacteria 21028
93 Ga0466961_0062862 3300044693 Bacteria 2359
94 Ga0466958_0138099 3300045836 Bacteria 1534
95 Ga0495686_0078077 3300047472 Bacteria 2027
96 Ga0496101_0038114 3300048904 Bacteria 3413
97 Ga0496102_0174983 3300048905 Bacteria 2021
98 Ga0496104_0240962 3300048907 Bacteria 1721
99 Ga0496105_0078822 3300048908 Bacteria 2720
100 Ga0496105_0137573 3300048908 Bacteria 2011
101 Ga0496105_0144293 3300048908 Bacteria 1958
102 Ga0496108_0072265 3300048911 Bacteria 2912
103 Ga0496109_0028387 3300048912 Bacteria 5003
104 Ga0496111_0059254 3300048914 Bacteria 2774
105 Ga0496113_0050859 3300048916 Bacteria 3091
106 Ga0496114_0043638 3300048917 Bacteria 3718
107 Ga0496115_0121817 3300048918 Bacteria 2147
108 Ga0496115_0145103 3300048918 Bacteria 1959
109 Ga0496115_0181736 3300048918 Bacteria 1738
110 Ga0496119_0190528 3300048922 Bacteria 1069
111 Ga0496125_0108586 3300048928 Bacteria 2018
112 Ga0496126_0078022 3300048929 Bacteria 2935
113 Ga0501083_0041829 3300049744 Bacteria 3108
114 Ga0501044_0184843 3300049823 Bacteria 2050
115 Ga0501044_0498521 3300049823 Bacteria 1119
116 nmdc:mga09592_245195_c1 3300050508 Bacteria 1553
117 nmdc:mga08y16_112474_c1 3300050511 Bacteria 2834
118 Ga0500635_0000241 3300053080 Bacteria 23974
119 Ga0500559_0023981 3300053136 Bacteria 2592
120 Ga0500568_0000099 3300053139 Bacteria 80197
121 Ga0500573_0016401 3300053140 Bacteria 4205
122 Ga0500616_0002982 3300053153 Bacteria 13395
123 8002812290 8002811521 Bacteria 2942897
124 2587861929 2585428094 Bacteria 3604039
125 2643767228 2643221549 Bacteria 4042819
126 2643877122 2643221572 Bacteria 3614809
127 2644112844 2643221619 Bacteria 4158469
128 2644181864 2643221632 Bacteria 3406696
129 2644280195 2643221649 Bacteria 3867359
130 2644384177 2643221669 Bacteria 3611286
131 2723643987 2721755702 Bacteria 4373124
132 2808900002 2808606372 Bacteria 4649509
133 2833712823 2833709550 Bacteria 4008291
134 2857730687 2857729791 Bacteria 4040535
135 2895662091 2895660088 Bacteria 3782833
136 2919444739 2919443155 Bacteria 4072969
137 2928122703 2928121344 Bacteria 3972376
138 2935412408 2935409751 Bacteria 4179611
139 2966922875 2966921586 Bacteria 3092803
140 2966926931 2966924647 Bacteria 3268643
141 2995726340 2995726249 Bacteria 3470435
142 8055039908 8055037949 Bacteria 3337834
143 rootH2_10104363
144 rootH1_10124561
145 Ga0065714_10070720
146 Ga0070691_10118574
147 Ga0070675_100026140
148 Ga0070714_100166443
149 Ga0070708_100019458
150 Ga0070708_100076134
151 Ga0070706_100000135
152 Ga0070706_100005245
153 Ga0070706_100015557
154 Ga0070706_100015874
155 Ga0070707_100008811
156 Ga0070707_100021660
157 Ga0070707_100104172
158 Ga0070707_100148067
159 Ga0070698_100025941
160 Ga0070698_100052418
161 Ga0070698_100083983
162 Ga0070699_100019699
163 Ga0070699_100058701
164 Ga0070697_100003419
165 Ga0070697_100015103
166 Ga0068852_100263078
167 Ga0068863_100024079
168 Ga0070717_10000632
169 Ga0070717_10004100
170 Ga0070717_10009278
171 Ga0097621_100042689
172 Ga0068871_100034596
173 Ga0075429_100293910
174 Ga0111539_10089602
175 Ga0105245_10002411
176 Ga0105241_10052301
177 Ga0105242_10252669
178 Ga0105237_10136138
179 Ga0157369_10000935
180 Ga0157369_10061806
181 Ga0157369_10425708
182 Ga0157380_10005552
183 Ga0157376_10098249
184 Ga0213876_10007352
185 Ga0207688_10025153
186 Ga0207684_10000046
187 Ga0207684_10007375
188 Ga0207684_10013784
189 Ga0207684_10024870
190 Ga0207684_10026093
191 Ga0207654_10129085
192 Ga0207671_10072271
193 Ga0207646_10002646
194 Ga0207646_10003016
195 Ga0207646_10044919
196 Ga0207646_10094387
197 Ga0207646_10180095
198 Ga0207687_10069314
199 Ga0207667_10098234
200 Ga0207668_10023970
201 Ga0207678_10232008
202 Ga0207641_10011462
203 Ga0207648_10018782
204 Ga0265319_1000390
205 Ga0265318_10001491
206 Ga0265318_10001595
207 Ga0265338_10026006
208 Ga0265330_10000304
209 Ga0265332_10021304
210 Ga0265328_10025071
211 Ga0265320_10000383
212 Ga0265325_10002446
213 Ga0265340_10000489
214 Ga0265331_10000453
215 Ga0265316_10001786
216 Ga0265316_10005926
217 Ga0307408_100072009
218 Ga0265313_10000026
219 Ga0265313_10000370
220 Ga0265314_10000684
221 Ga0265342_10000340
222 Ga0316576_10002123
223 Ga0307414_10321750
224 Ga0307507_10044615
225 Ga0373925_0241229
226 Ga0436364_0142162
227 Ga0436364_1198871
228 Ga0436365_0342365
229 Ga0436365_0369263
230 Ga0436365_0656444
231 Ga0436365_1041077
232 Ga0436365_1490228
233 Ga0436365_1547899
234 Ga0451807_0049902
235 Ga0466961_0062862
236 Ga0466958_0138099
237 Ga0495686_0078077
238 Ga0496101_0038114
239 Ga0496102_0174983
240 Ga0496104_0240962
241 Ga0496105_0078822
242 Ga0496105_0137573
243 Ga0496105_0144293
244 Ga0496108_0072265
245 Ga0496109_0028387
246 Ga0496111_0059254
247 Ga0496113_0050859
248 Ga0496114_0043638
249 Ga0496115_0121817
250 Ga0496115_0145103
251 Ga0496115_0181736
252 Ga0496119_0190528
253 Ga0496125_0108586
254 Ga0496126_0078022
255 Ga0501083_0041829
256 Ga0501044_0184843
257 Ga0501044_0498521
258 nmdc:mga09592_245195_c1
259 nmdc:mga08y16_112474_c1
260 Ga0500635_0000241
261 Ga0500559_0023981
262 Ga0500568_0000099
263 Ga0500573_0016401
264 Ga0500616_0002982
265 8002812290
266 2587861929
267 2643767228
268 2643877122
269 2644112844
270 2644181864
271 2644280195
272 2644384177
273 2723643987
274 2808900002
275 2833712823
276 2857730687
277 2895662091
278 2919444739
279 2928122703
280 2935412408
281 2966922875
282 2966926931
283 2995726340
284 8055039908

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00676

E1_dh

Dehydrogenase E1 component

41

340

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
2bfb-assembly1.cif.gz_A-2 reactivity modulation of human branched-chain alpha-ketoacid dehydrogenase by an internal molecular switch 0.9657 3 338
1v1r-assembly1.cif.gz_A-2 crosstalk between cofactor binding and the phosphorylation loop conformation in the bckd machine 0.964 3 338
1x7x-assembly1.cif.gz_A crystal structure of the human mitochondrial branched-chain alpha-ketoacid dehydrogenase 0.9637 3 338
2j9f-assembly1.cif.gz_C human branched-chain alpha-ketoacid dehydrogenase-decarboxylase e1b 0.9636 3 338
2bfc-assembly1.cif.gz_A-2 reactivity modulation of human branched-chain alpha-ketoacid dehydrogenase by an internal molecular switch 0.9634 3 338
ID Description Score Start End Superfamily
1v1rA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.964 3 338 3.40.50.970
af_P12694_46_445_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9639 3 337 3.40.50.970
af_I1KAH2_90_485_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9562 1 338 3.40.50.970
2bp7G00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9555 4 334 3.40.50.970
af_A0A1D6GTY5_25_137_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9531 119 232 3.40.50.970
ID Description Score Start End GO Terms
AF-T0YT61-F1-model_v4 Pyruvate dehydrogenase (Acetyl-transferring) E1 component, alpha subunit 0.9779 5 274 GO:0003863
GO:0009083
AF-A0A6N7PXT1-F1-model_v4 2-oxoisovalerate dehydrogenase subunit alpha (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain) 0.9773 2 337 GO:0003863
GO:0009083
AF-A0A072V185-F1-model_v4 2-oxoisovalerate dehydrogenase E1 component, alpha subunit 0.9755 4 238 GO:0016624
AF-A0A7Z7YS32-F1-model_v4 2-oxoisovalerate dehydrogenase subunit alpha (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain) 0.9744 142 282 GO:0009083
GO:0016624
AF-A0A1A9Y838-F1-model_v4 deleted 0.9737 118 278

Map