F187194

General Info

Members Datasets Scaffolds Average Seq Length
142 105 143 294

Family's Representative Sequence

Representative Sequence 3300053738|Ga0500613_000221|Ga0500613_000221_467_1387
Length 300
Sequence MPELPEVETVRRGLFSLIVGRTVKAVEHDTPKSFPNATTDVRQFLIGAKIIDVRRRAKVLMIDLSTGYTLVIHLKMTGQMVFVGSSEPGGTGLADTKNENELRFGAGHPNESLVGSLPDRSTRVTFTFEDGSHLYFNDQRKFGWVRLMPTLEVPNIDFMQKVGPEPLDADFTAEQFRARTNIKAALLDQTVIAGVGNIYADESLWGAKIHPKRLVGGITPTEFRRLYSELRSVMNLAIEKGGSTDKNYVNAEGKRGSYMDFARVFRREGKPCPRCGTTIIKFKSAGRGTHICPHCQVLSP

Samples

Sample ID Description Type Environment
1 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
10 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
11 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
12 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
13 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
14 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
15 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
20 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
21 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
22 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
23 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
24 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
25 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
26 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
27 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
28 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
29 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
30 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
31 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
32 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
33 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
34 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
35 3300009993 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG Metagenome Rhizosphere
36 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
37 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
38 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
39 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
40 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
41 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
42 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
43 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
58 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
59 3300030734 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 5 Metagenome Rhizosphere
60 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
61 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
62 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
63 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
64 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
65 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
66 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
67 3300042185 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515W_E14_080116_2592 Metagenome Rhizosphere
68 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
69 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
70 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
71 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
72 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
73 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
74 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
75 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
76 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
77 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
78 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
83 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
84 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
85 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
86 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
87 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
88 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
89 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
90 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
91 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
92 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
93 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
94 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
95 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
96 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
97 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
98 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
99 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
100 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
101 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
102 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
103 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
104 3300053724 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 endosphere Metagenome Endosphere
105 3300053738 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 27.46
Nodule 0
Rhizoplane 1.41
Rhizosphere 68.31
Stem 0
Stem Tuber 0
Unclassified 2.82

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10006232 3300001979 Bacteria 4962
2 rootH1_10003685 3300003316 Bacteria 49635
3 rootH1_10003685 3300003323 Bacteria 21096
4 rootH1_10001727 3300003323 Bacteria 102468
5 rootH1_10371389 3300003323 Unclassified 1321
6 Ga0070658_10184364 3300005327 Unclassified 1757
7 Ga0070676_10002117 3300005328 Bacteria 10101
8 Ga0070676_10021058 3300005328 Bacteria 3648
9 Ga0070676_10033363 3300005328 Bacteria 2954
10 Ga0070670_100538069 3300005331 Bacteria 1041
11 Ga0070666_10103182 3300005335 Bacteria 1967
12 Ga0070660_100000148 3300005339 Bacteria 45185
13 Ga0070660_100064158 3300005339 Bacteria 2857
14 Ga0070674_100079064 3300005356 Bacteria 2345
15 Ga0070673_100000196 3300005364 Bacteria 29915
16 Ga0070678_100004570 3300005456 Bacteria 7860
17 Ga0068867_100013774 3300005459 Bacteria 5726
18 Ga0070685_10000251 3300005466 Bacteria 35059
19 Ga0070672_100016077 3300005543 Bacteria 5351
20 Ga0070665_100036134 3300005548 Bacteria 4971
21 Ga0068855_100000002 3300005563 Bacteria 616881
22 Ga0068856_100008103 3300005614 Bacteria 10258
23 Ga0068852_100027187 3300005616 Unclassified 4660
24 Ga0068863_100163707 3300005841 Bacteria 2132
25 Ga0081455_10000006 3300005937 Bacteria 323066
26 Ga0075365_10000005 3300006038 Bacteria 125137
27 Ga0075365_10000113 3300006038 Bacteria 23945
28 Ga0075365_10007307 3300006038 Bacteria 6173
29 Ga0075365_10015829 3300006038 Bacteria 4570
30 Ga0075365_10075289 3300006038 Bacteria 2278
31 Ga0075368_10000124 3300006042 Bacteria 20409
32 Ga0075363_100012789 3300006048 Bacteria 4051
33 Ga0075364_10005830 3300006051 Bacteria 7191
34 Ga0075367_10000120 3300006178 Bacteria 22682
35 Ga0075366_10011033 3300006195 Bacteria 5088
36 Ga0075428_100006674 3300006844 Bacteria 12840
37 Ga0105240_10000003 3300009093 Bacteria 1183681
38 Ga0105240_10000030 3300009093 Bacteria 321312
39 Ga0105240_10000468 3300009093 Bacteria 74517
40 Ga0105240_10000909 3300009093 Bacteria 52908
41 Ga0105245_10000127 3300009098 Bacteria 72844
42 Ga0105243_10000001 3300009148 Bacteria 1156578
43 Ga0105241_10047852 3300009174 Unclassified 3253
44 Ga0105242_10000001 3300009176 Bacteria 574039
45 Ga0105242_10000728 3300009176 Bacteria 25654
46 Ga0105237_10000001 3300009545 Bacteria 1009213
47 Ga0105032_100002 3300009979 Bacteria 303884
48 Ga0105028_100074 3300009993 Bacteria 10083
49 Ga0105239_10022076 3300010375 Bacteria 7017
50 Ga0105239_10054630 3300010375 Unclassified 4381
51 Ga0157370_10000232 3300013104 Bacteria 71177
52 Ga0157369_10003202 3300013105 Bacteria 19516
53 Ga0157374_10001995 3300013296 Bacteria 17130
54 Ga0157372_10000007 3300013307 Bacteria 340690
55 Ga0157372_10000096 3300013307 Bacteria 91282
56 Ga0157372_10220289 3300013307 Unclassified 2200
57 Ga0157377_10097105 3300014745 Unclassified 1749
58 Ga0157379_10002749 3300014968 Bacteria 14838
59 Ga0207645_10004645 3300025907 Bacteria 10114
60 Ga0207645_10024865 3300025907 Bacteria 3880
61 Ga0207705_10000231 3300025909 Bacteria 55679
62 Ga0207695_10000005 3300025913 Bacteria 1196715
63 Ga0207695_10000009 3300025913 Bacteria 1034276
64 Ga0207695_10004122 3300025913 Bacteria 19960
65 Ga0207695_10009215 3300025913 Bacteria 12234
66 Ga0207671_10000003 3300025914 Bacteria 1065461
67 Ga0207671_10023995 3300025914 Unclassified 4591
68 Ga0207657_10003173 3300025919 Bacteria 17584
69 Ga0207657_10003845 3300025919 Bacteria 15946
70 Ga0207657_10064510 3300025919 Bacteria 3126
71 Ga0207687_10000107 3300025927 Bacteria 60194
72 Ga0207686_10000001 3300025934 Bacteria 1169580
73 Ga0207686_10001432 3300025934 Bacteria 13523
74 Ga0207686_10110488 3300025934 Bacteria 1853
75 Ga0207709_10000002 3300025935 Bacteria 1171536
76 Ga0207691_10233460 3300025940 Bacteria 1592
77 Ga0207667_10000005 3300025949 Bacteria 715503
78 Ga0207667_10000048 3300025949 Bacteria 238293
79 Ga0207651_10003662 3300025960 Bacteria 7586
80 Ga0207702_10004923 3300026078 Bacteria 11744
81 Ga0207641_10040451 3300026088 Bacteria 3904
82 Ga0207641_10143773 3300026088 Bacteria 2155
83 Ga0207683_10046581 3300026121 Bacteria 3795
84 Ga0209813_10000186 3300027866 Bacteria 19692
85 Ga0314311_1205139 3300030733 Bacteria 3079
86 Ga0316179_1056598 3300030734 Bacteria 39107
87 Ga0316183_1094279 3300030742 Bacteria 3913
88 Ga0316183_1114883 3300030742 Bacteria 48072
89 Ga0316182_1062290 3300030745 Bacteria 23471
90 Ga0316182_1283064 3300030745 Bacteria 6205
91 Ga0316182_1432506 3300030745 Bacteria 7823
92 Ga0307412_10022133 3300031911 Bacteria 3892
93 Ga0395901_0020558 3300038443 Bacteria 6756
94 Ga0439461_0000020 3300041410 Bacteria 20574
95 Ga0450920_002045 3300042122 Bacteria 3409
96 Ga0439446_0000002 3300042156 Bacteria 177065
97 Ga0450909_000921 3300042185 Bacteria 4030
98 Ga0450918_016960 3300042531 Unclassified 1268
99 Ga0450918_019950 3300042531 Bacteria 1171
100 Ga0453684_0538131 3300044712 Bacteria 1288
101 Ga0451576_0545844 3300045051 Bacteria 1218
102 Ga0495638_0000119 3300046460 Bacteria 127603
103 Ga0495597_0011623 3300046542 Bacteria 4264
104 Ga0495660_0000114 3300046810 Bacteria 86218
105 Ga0495686_0013283 3300047472 Bacteria 5719
106 Ga0496108_0242542 3300048911 Bacteria 1568
107 Ga0496115_0000001 3300048918 Bacteria 367230
108 Ga0496124_0077751 3300048927 Unclassified 2736
109 Ga0501034_0001839 3300049571 Bacteria 26945
110 Ga0501034_0710060 3300049571 Unclassified 903
111 Ga0501037_0000001 3300049573 Bacteria 753276
112 Ga0501038_0003624 3300049574 Bacteria 14387
113 Ga0501043_0070647 3300049579 Unclassified 2743
114 Ga0501073_0202736 3300049589 Bacteria 1372
115 Ga0501080_0000007 3300049742 Bacteria 135749
116 nmdc:mga03n38_28643_c1 3300050490 Unclassified 2324
117 nmdc:mga00v17_128_c1 3300050491 Bacteria 44347
118 nmdc:mga0yw44_114_c1 3300050492 Bacteria 28261
119 nmdc:mga0yw44_11_c1 3300050492 Bacteria 130624
120 nmdc:mga0yw44_129812_c1 3300050492 Bacteria 1630
121 nmdc:mga0yw44_5_c1 3300050492 Bacteria 313167
122 nmdc:mga06z11_752_c1 3300050494 Bacteria 11837
123 nmdc:mga04h51_2673_c1 3300050495 Unclassified 4245
124 nmdc:mga07m45_63423_c1 3300050496 Bacteria 2096
125 nmdc:mga07m45_777_c2 3300050496 Bacteria 11176
126 Ga0500643_006222 3300053087 Bacteria 5019
127 Ga0500644_0002479 3300053088 Unclassified 4615
128 Ga0500646_0000010 3300053090 Bacteria 91525
129 Ga0500583_0000311 3300053092 Bacteria 16660
130 Ga0500583_0015378 3300053092 Bacteria 3025
131 Ga0500651_0000043 3300053093 Bacteria 86502
132 Ga0500641_0000001 3300053096 Bacteria 1115973
133 Ga0500650_0029784 3300053098 Unclassified 2472
134 Ga0500555_000045 3300053103 Bacteria 63148
135 Ga0500569_000002 3300053109 Bacteria 127605
136 Ga0500594_0000028 3300053118 Bacteria 50845
137 Ga0500652_000001 3300053131 Bacteria 946868
138 Ga0500577_0026776 3300053142 Bacteria 1967
139 Ga0500588_0000032 3300053146 Bacteria 28393
140 Ga0500616_0000012 3300053153 Bacteria 681798
141 Ga0500616_0010196 3300053153 Bacteria 5639
142 Ga0500570_018526 3300053724 Unclassified 3900
143 Ga0500613_000221 3300053738 Bacteria 2747

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046460 Ga0495638_0000119 Ga0495638_0000119_112007_112924 265
2 3300046542 Ga0495597_0011623 Ga0495597_0011623_1505_2422 265
3 3300053109 Ga0500569_000002 Ga0500569_000002_14680_15597 265
4 3300053146 Ga0500588_0000032 Ga0500588_0000032_14662_15579 265
5 3300053092 Ga0500583_0015378 Ga0500583_0015378_667_1587 284
6 3300053738 Ga0500613_000221 Ga0500613_000221_467_1387 284
7 3300003323 rootH1_10001727 rootH1_1000172766 288
8 3300003323 rootH1_10371389 rootH1_103713891 288
9 3300005328 Ga0070676_10033363 Ga0070676_100333632 288
10 3300005339 Ga0070660_100000148 Ga0070660_10000014810 288
11 3300005563 Ga0068855_100000002 Ga0068855_100000002607 288
12 3300005616 Ga0068852_100027187 Ga0068852_1000271873 288
13 3300005937 Ga0081455_10000006 Ga0081455_10000006265 288
14 3300006038 Ga0075365_10000005 Ga0075365_1000000580 288
15 3300006038 Ga0075365_10075289 Ga0075365_100752892 288
16 3300006844 Ga0075428_100006674 Ga0075428_1000066748 288
17 3300009093 Ga0105240_10000030 Ga0105240_10000030296 288
18 3300009093 Ga0105240_10000468 Ga0105240_1000046880 288
19 3300009093 Ga0105240_10000909 Ga0105240_1000090959 288
20 3300009174 Ga0105241_10047852 Ga0105241_100478522 288
21 3300009545 Ga0105237_10000001 Ga0105237_1000000179 288
22 3300009993 Ga0105028_100074 Ga0105028_1000746 288
23 3300010375 Ga0105239_10054630 Ga0105239_100546304 288
24 3300013104 Ga0157370_10000232 Ga0157370_1000023232 288
25 3300013105 Ga0157369_10003202 Ga0157369_1000320215 288
26 3300013307 Ga0157372_10000007 Ga0157372_1000000779 288
27 3300013307 Ga0157372_10000096 Ga0157372_1000009676 288
28 3300014968 Ga0157379_10002749 Ga0157379_1000274910 288
29 3300025913 Ga0207695_10000009 Ga0207695_1000000980 288
30 3300025913 Ga0207695_10004122 Ga0207695_100041229 288
31 3300025913 Ga0207695_10009215 Ga0207695_100092153 288
32 3300025914 Ga0207671_10000003 Ga0207671_1000000380 288
33 3300025919 Ga0207657_10003845 Ga0207657_100038458 288
34 3300025949 Ga0207667_10000005 Ga0207667_10000005717 288
35 3300025949 Ga0207667_10000048 Ga0207667_10000048185 288
36 3300031911 Ga0307412_10022133 Ga0307412_100221335 288
37 3300038443 Ga0395901_0020558 Ga0395901_0020558_3165_4034 288
38 3300041410 Ga0439461_0000020 Ga0439461_0000020_16314_17390 288
39 3300042156 Ga0439446_0000002 Ga0439446_0000002_73318_74187 288
40 3300044712 Ga0453684_0538131 Ga0453684_0538131_220_1089 288
41 3300045051 Ga0451576_0545844 Ga0451576_0545844_77_946 288
42 3300046810 Ga0495660_0000114 Ga0495660_0000114_11825_12691 288
43 3300048918 Ga0496115_0000001 Ga0496115_0000001_334415_335281 288
44 3300048927 Ga0496124_0077751 Ga0496124_0077751_1568_2437 288
45 3300049571 Ga0501034_0001839 Ga0501034_0001839_3606_4472 288
46 3300049571 Ga0501034_0710060 Ga0501034_0710060_16_882 288
47 3300049573 Ga0501037_0000001 Ga0501037_0000001_725312_726178 288
48 3300049574 Ga0501038_0003624 Ga0501038_0003624_8854_9720 288
49 3300049579 Ga0501043_0070647 Ga0501043_0070647_1358_2224 288
50 3300050492 nmdc:mga0yw44_129812_c1 nmdc:mga0yw44_129812_c1_214_1221 288
51 3300050492 nmdc:mga0yw44_5_c1 nmdc:mga0yw44_5_c1_203439_204305 288
52 3300053088 Ga0500644_0002479 Ga0500644_0002479_2111_2977 288
53 3300053103 Ga0500555_000045 Ga0500555_000045_29659_30525 288
54 3300053142 Ga0500577_0026776 Ga0500577_0026776_800_1669 288
55 3300053153 Ga0500616_0000012 Ga0500616_0000012_4218_5084 288
56 3300053153 Ga0500616_0010196 Ga0500616_0010196_110_976 288
57 3300053724 Ga0500570_018526 Ga0500570_018526_474_1340 288
58 3300005331 Ga0070670_100538069 Ga0070670_1005380692 289
59 3300005459 Ga0068867_100013774 Ga0068867_1000137741 289
60 3300005841 Ga0068863_100163707 Ga0068863_1001637073 289
61 3300006038 Ga0075365_10000113 Ga0075365_1000011315 289
62 3300009093 Ga0105240_10000003 Ga0105240_1000000391 289
63 3300009098 Ga0105245_10000127 Ga0105245_1000012758 289
64 3300009148 Ga0105243_10000001 Ga0105243_100000011159 289
65 3300009176 Ga0105242_10000001 Ga0105242_1000000199 289
66 3300009979 Ga0105032_100002 Ga0105032_100002336 289
67 3300010375 Ga0105239_10022076 Ga0105239_100220766 289
68 3300013296 Ga0157374_10001995 Ga0157374_1000199514 289
69 3300014745 Ga0157377_10097105 Ga0157377_100971053 289
70 3300025913 Ga0207695_10000005 Ga0207695_1000000598 289
71 3300025914 Ga0207671_10023995 Ga0207671_100239953 289
72 3300025927 Ga0207687_10000107 Ga0207687_1000010723 289
73 3300025934 Ga0207686_10000001 Ga0207686_100000011240 289
74 3300025935 Ga0207709_10000002 Ga0207709_1000000298 289
75 3300026088 Ga0207641_10143773 Ga0207641_101437733 289
76 3300030733 Ga0314311_1205139 Ga0314311_12051394 289
77 3300030734 Ga0316179_1056598 Ga0316179_105659821 289
78 3300030742 Ga0316183_1114883 Ga0316183_111488349 289
79 3300030745 Ga0316182_1062290 Ga0316182_10622907 289
80 3300042531 Ga0450918_016960 Ga0450918_016960_237_1112 289
81 3300047472 Ga0495686_0013283 Ga0495686_0013283_3272_4144 289
82 3300049589 Ga0501073_0202736 Ga0501073_0202736_270_1142 289
83 3300050492 nmdc:mga0yw44_114_c1 nmdc:mga0yw44_114_c1_3087_4166 289
84 3300053087 Ga0500643_006222 Ga0500643_006222_936_1805 289
85 3300053092 Ga0500583_0000311 Ga0500583_0000311_2596_3465 289
86 3300053093 Ga0500651_0000043 Ga0500651_0000043_79114_79983 289
87 3300053096 Ga0500641_0000001 Ga0500641_0000001_736367_737236 289
88 3300053098 Ga0500650_0029784 Ga0500650_0029784_584_1453 289
89 3300053118 Ga0500594_0000028 Ga0500594_0000028_6522_7391 289
90 3300053131 Ga0500652_000001 Ga0500652_000001_744192_745061 289
91 3300001979 JGI24740J21852_10006232 JGI24740J21852_100062324 290
92 3300003316 rootH1_10003685 rootH1_1000368526 290
93 3300005327 Ga0070658_10184364 Ga0070658_101843641 290
94 3300005328 Ga0070676_10002117 Ga0070676_1000211711 290
95 3300005328 Ga0070676_10021058 Ga0070676_100210584 290
96 3300005335 Ga0070666_10103182 Ga0070666_101031823 290
97 3300005339 Ga0070660_100064158 Ga0070660_1000641584 290
98 3300005356 Ga0070674_100079064 Ga0070674_1000790642 290
99 3300005364 Ga0070673_100000196 Ga0070673_1000001963 290
100 3300005456 Ga0070678_100004570 Ga0070678_1000045701 290
101 3300005466 Ga0070685_10000251 Ga0070685_1000025125 290
102 3300005543 Ga0070672_100016077 Ga0070672_1000160773 290
103 3300005548 Ga0070665_100036134 Ga0070665_1000361346 290
104 3300005614 Ga0068856_100008103 Ga0068856_1000081034 290
105 3300006038 Ga0075365_10007307 Ga0075365_100073075 290
106 3300006038 Ga0075365_10015829 Ga0075365_100158292 290
107 3300006042 Ga0075368_10000124 Ga0075368_1000012413 290
108 3300006048 Ga0075363_100012789 Ga0075363_1000127894 290
109 3300006051 Ga0075364_10005830 Ga0075364_100058303 290
110 3300006178 Ga0075367_10000120 Ga0075367_1000012013 290
111 3300006195 Ga0075366_10011033 Ga0075366_100110336 290
112 3300009176 Ga0105242_10000728 Ga0105242_1000072819 290
113 3300013307 Ga0157372_10220289 Ga0157372_102202893 290
114 3300025907 Ga0207645_10004645 Ga0207645_1000464511 290
115 3300025907 Ga0207645_10024865 Ga0207645_100248653 290
116 3300025909 Ga0207705_10000231 Ga0207705_100002315 290
117 3300025919 Ga0207657_10003173 Ga0207657_1000317319 290
118 3300025919 Ga0207657_10064510 Ga0207657_100645104 290
119 3300025934 Ga0207686_10001432 Ga0207686_1000143212 290
120 3300025934 Ga0207686_10110488 Ga0207686_101104882 290
121 3300025940 Ga0207691_10233460 Ga0207691_102334603 290
122 3300025960 Ga0207651_10003662 Ga0207651_100036623 290
123 3300026078 Ga0207702_10004923 Ga0207702_100049238 290
124 3300026088 Ga0207641_10040451 Ga0207641_100404513 290
125 3300026121 Ga0207683_10046581 Ga0207683_100465813 290
126 3300027866 Ga0209813_10000186 Ga0209813_100001864 290
127 3300030742 Ga0316183_1094279 Ga0316183_10942793 290
128 3300030745 Ga0316182_1283064 Ga0316182_12830646 290
129 3300030745 Ga0316182_1432506 Ga0316182_14325065 290
130 3300042122 Ga0450920_002045 Ga0450920_002045_1600_2472 290
131 3300042185 Ga0450909_000921 Ga0450909_000921_111_983 290
132 3300042531 Ga0450918_019950 Ga0450918_019950_24_896 290
133 3300048911 Ga0496108_0242542 Ga0496108_0242542_456_1337 290
134 3300049742 Ga0501080_0000007 Ga0501080_0000007_77721_78593 290
135 3300050490 nmdc:mga03n38_28643_c1 nmdc:mga03n38_28643_c1_799_1689 290
136 3300050491 nmdc:mga00v17_128_c1 nmdc:mga00v17_128_c1_7067_7957 290
137 3300050492 nmdc:mga0yw44_11_c1 nmdc:mga0yw44_11_c1_85233_86123 290
138 3300050494 nmdc:mga06z11_752_c1 nmdc:mga06z11_752_c1_10322_11212 290
139 3300050495 nmdc:mga04h51_2673_c1 nmdc:mga04h51_2673_c1_580_1470 290
140 3300050496 nmdc:mga07m45_63423_c1 nmdc:mga07m45_63423_c1_170_1060 290
141 3300050496 nmdc:mga07m45_777_c2 nmdc:mga07m45_777_c2_9341_10213 290
142 3300053090 Ga0500646_0000010 Ga0500646_0000010_17707_18579 290

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06827

zf-FPG_IleRS

Zinc finger found in FPG and IleRS

269

297

0.98

PF01149

Fapy_DNA_glyco

Formamidopyrimidine-DNA glycosylase N-terminal domain

1

145

0.92

PF06831

H2TH

Formamidopyrimidine-DNA glycosylase H2TH domain

162

248

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
1kfv-assembly1.cif.gz_A crystal structure of lactococcus lactis formamido-pyrimidine dna glycosylase (alias fpg or mutm) non covalently bound to an ap site containing dna. 0.9285 3 288
4cis-assembly1.cif.gz_A structure of mutm in complex with carbocyclic 8-oxo-g containing dna 0.9285 2 288
1kfv-assembly2.cif.gz_B crystal structure of lactococcus lactis formamido-pyrimidine dna glycosylase (alias fpg or mutm) non covalently bound to an ap site containing dna. 0.9276 3 288
1nnj-assembly1.cif.gz_A crystal structure complex between the lactococcus lactis fpg and an abasic site containing dna 0.9254 3 288
4cis-assembly1.cif.gz_A structure of mutm in complex with carbocyclic 8-oxo-g containing dna 0.9252 2 288
ID Description Score Start End Superfamily
4ojuC00 Alpha Beta;Alpha-Beta Horseshoe;Leucine-rich repeat, LRR (right-handed beta-alpha superhelix);Ribonuclease Inhibitor 0.9423 47 69 3.80.10.10
3sarA02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9317 146 286 1.10.8.50
1kfvB02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9309 148 282 1.10.8.50
1k82C02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9293 146 286 1.10.8.50
1kfvB02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9236 148 282 1.10.8.50
ID Description Score Start End GO Terms
AF-A0A660M9G6-F1-model_v4 Formamidopyrimidine-DNA glycosylase catalytic domain-containing protein 0.9753 1 137 GO:0003906
GO:0006284
GO:0008270
GO:0034039
AF-A0A521GSN6-F1-model_v4 DNA-formamidopyrimidine glycosylase (EC 3.2.2.23) 0.9681 1 287 GO:0003684
GO:0006284
GO:0008270
GO:0034039
GO:0140078
AF-A0A660M9G6-F1-model_v4 Formamidopyrimidine-DNA glycosylase catalytic domain-containing protein 0.9615 1 137 GO:0003906
GO:0006284
GO:0008270
GO:0034039
AF-A0A2T2QWB3-F1-model_v4 Formamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase) (EC 3.2.2.23) (DNA-(apurinic or apyrimidinic site) lyase MutM) (AP lyase MutM) (EC 4.2.99.18) 0.9599 1 287 GO:0003684
GO:0006284
GO:0008270
GO:0034039
GO:0140078
AF-A0A521GSN6-F1-model_v4 DNA-formamidopyrimidine glycosylase (EC 3.2.2.23) 0.9549 1 287 GO:0003684
GO:0006284
GO:0008270
GO:0034039
GO:0140078

Feature Viewer

pLDDT pTM Quality
87.06 0.83 High
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Predicted Structure (AlphaFold2)

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