F185458

General Info

Members Datasets Scaffolds Average Seq Length
142 98 142 313

Family's Representative Sequence

Representative Sequence 3300006914|Ga0075436_100090492|Ga0075436_1000904923
Length 359
Sequence VRDPFAIRRGVNAALERVEREVLVSVVKSSAASARGPAPASAPSVPVLDSPAMNEAGTPLERPHVAALDAILGKPFRVLDDGLVRVVDYMGSDESIVQAARVSYGAGTKRIHEDRGLIRYLMRHRHTTPFEMCEVKLHVRVPMDCWRQWIRHRTASVNEYSTRYSVAIDAAQKTAPGEWRLQSQKNRQGSDEFLDPARGAAFSAKEAELHALARKIYEDRLAEGISREQARKDLPLSTYTEAYWKTNLHNLLHFLRLRMDAHAQEEIRAYAEIIGKEIVNRWCPITWEAFLDYSMNALELSATEWRVVAAVAASDKAAALEIAKAAGMMNLVEGRLAKNRERDELAAKLRQLNLPVPWE

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
7 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
8 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
9 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
10 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
11 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
12 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
13 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
14 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
15 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
16 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
17 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
18 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
19 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
20 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
21 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
22 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
23 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
24 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
25 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
26 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
27 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
28 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
29 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
30 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
31 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
32 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
34 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
35 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
36 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
37 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
38 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
39 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
47 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
49 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
50 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
51 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
52 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
53 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
54 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
55 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
56 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
57 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
58 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
59 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
60 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
61 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
62 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
63 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
64 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
65 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
66 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
67 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
68 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
69 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
70 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
71 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
72 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
73 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
74 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
75 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
76 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
77 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
78 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
79 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
80 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
81 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
82 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
83 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
84 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
88 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
89 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
90 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
91 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
92 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
93 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
94 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
95 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
96 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
97 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
98 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.3
Metatranscriptomes 0.7
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.7
Nodule 0
Rhizoplane 0
Rhizosphere 98.59
Stem 0
Stem Tuber 0
Unclassified 0.7

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10001692 3300003203 Bacteria 10403
2 Ga0070690_100069518 3300005330 Bacteria 2285
3 Ga0070670_100013987 3300005331 Bacteria 6881
4 Ga0070666_10168693 3300005335 Bacteria 1532
5 Ga0070680_100326812 3300005336 Bacteria 1302
6 Ga0070688_100143737 3300005365 Bacteria 1623
7 Ga0070703_10009140 3300005406 Bacteria 2796
8 Ga0070701_10092860 3300005438 Bacteria 1657
9 Ga0070711_100209611 3300005439 Bacteria 1508
10 Ga0070705_100014025 3300005440 Bacteria 4112
11 Ga0070700_100340575 3300005441 Bacteria 1108
12 Ga0070708_100000700 3300005445 Bacteria 25535
13 Ga0070708_100088576 3300005445 Bacteria 2814
14 Ga0068867_100033674 3300005459 Bacteria 3712
15 Ga0070707_100146431 3300005468 Bacteria 2299
16 Ga0070707_100333158 3300005468 Bacteria 1474
17 Ga0070698_100382861 3300005471 Bacteria 1339
18 Ga0070698_100385169 3300005471 Bacteria 1335
19 Ga0070699_100001681 3300005518 Bacteria 20169
20 Ga0070699_100140355 3300005518 Bacteria 2133
21 Ga0070697_100252382 3300005536 Bacteria 1509
22 Ga0070695_100000532 3300005545 Bacteria 20136
23 Ga0070696_100005531 3300005546 Bacteria 8434
24 Ga0068857_100018384 3300005577 Bacteria 6132
25 Ga0068860_100368027 3300005843 Bacteria 1417
26 Ga0081539_10000029 3300005985 Bacteria 322399
27 Ga0070717_10047784 3300006028 Bacteria 3508
28 Ga0075428_100002066 3300006844 Bacteria 21651
29 Ga0075428_100002683 3300006844 Bacteria 19348
30 Ga0075428_100027977 3300006844 Bacteria 6237
31 Ga0075430_100129360 3300006846 Bacteria 2104
32 Ga0075430_100252030 3300006846 Bacteria 1463
33 Ga0075431_100012618 3300006847 Bacteria 8531
34 Ga0075431_100385396 3300006847 Bacteria 1405
35 Ga0075433_10000243 3300006852 Bacteria 31451
36 Ga0075433_10008157 3300006852 Bacteria 8340
37 Ga0075433_10021031 3300006852 Bacteria 5465
38 Ga0075433_10027856 3300006852 Bacteria 4798
39 Ga0075434_100000090 3300006871 Bacteria 49611
40 Ga0075434_100013309 3300006871 Bacteria 7824
41 Ga0075434_100108605 3300006871 Bacteria 2785
42 Ga0075434_100310071 3300006871 Bacteria 1598
43 Ga0075429_100262501 3300006880 Bacteria 1512
44 Ga0075436_100004054 3300006914 Bacteria 10046
45 Ga0075436_100090492 3300006914 Bacteria 2127
46 Ga0075435_100000096 3300007076 Bacteria 47104
47 Ga0111539_10013091 3300009094 Bacteria 10375
48 Ga0111539_10017264 3300009094 Bacteria 8931
49 Ga0111539_10208062 3300009094 Bacteria 2280
50 Ga0105249_10602087 3300009553 Bacteria 1154
51 Ga0157375_10009191 3300013308 Bacteria 8664
52 Ga0157380_10155000 3300014326 Bacteria 1984
53 Ga0157380_10324466 3300014326 Bacteria 1429
54 Ga0157377_10161859 3300014745 Bacteria 1392
55 Ga0157377_10166774 3300014745 Bacteria 1374
56 Ga0157376_10131199 3300014969 Bacteria 2236
57 Ga0182007_10040088 3300015262 Bacteria 1565
58 Ga0207653_10013400 3300025885 Bacteria 2567
59 Ga0207699_10018548 3300025906 Bacteria 3689
60 Ga0207660_10280704 3300025917 Bacteria 1322
61 Ga0207646_10130263 3300025922 Bacteria 2263
62 Ga0207694_10080184 3300025924 Unclassified 2561
63 Ga0207641_10280918 3300026088 Bacteria 1566
64 Ga0207674_10008213 3300026116 Bacteria 12098
65 Ga0207428_10016128 3300027907 Bacteria 6435
66 Ga0207428_10056743 3300027907 Bacteria 3111
67 Ga0268264_10380199 3300028381 Bacteria 1352
68 Ga0265323_10037776 3300028653 Bacteria 1767
69 Ga0265760_10003354 3300031090 Bacteria 4679
70 Ga0265320_10006458 3300031240 Bacteria 7391
71 Ga0265339_10004169 3300031249 Bacteria 9927
72 Ga0265331_10007228 3300031250 Bacteria 6442
73 Ga0265327_10014022 3300031251 Bacteria 5277
74 Ga0265316_10008475 3300031344 Bacteria 9535
75 Ga0265316_10054177 3300031344 Bacteria 3141
76 Ga0265314_10011107 3300031711 Bacteria 7462
77 Ga0265314_10011326 3300031711 Bacteria 7372
78 Ga0265342_10000013 3300031712 Bacteria 202181
79 Ga0307410_10448537 3300031852 Bacteria 1052
80 Ga0373926_0035711 3300035083 Bacteria 1764
81 Ga0373935_0173581 3300035692 Bacteria 1476
82 Ga0373927_0005108 3300035695 Bacteria 9084
83 Ga0373927_0324510 3300035695 Bacteria 1014
84 Ga0316582_0207475 3300036647 Bacteria 1338
85 Ga0316582_0354194 3300036647 Bacteria 1010
86 Ga0316584_0080155 3300036712 Bacteria 2446
87 Ga0373925_0000354 3300037068 Bacteria 47767
88 Ga0395900_0033247 3300037418 Bacteria 5309
89 Ga0436364_1268596 3300037853 Bacteria 1753
90 Ga0395901_0054256 3300038443 Bacteria 4165
91 Ga0451577_0000380 3300042876 Bacteria 82685
92 Ga0451577_0005699 3300042876 Bacteria 12638
93 Ga0453683_0049809 3300044673 Bacteria 2625
94 Ga0453684_0000039 3300044712 Bacteria 697730
95 Ga0453684_0006491 3300044712 Bacteria 22193
96 Ga0453684_0172755 3300044712 Bacteria 2545
97 Ga0453684_0374470 3300044712 Unclassified 1600
98 Ga0451576_0013983 3300045051 Bacteria 8949
99 Ga0451576_0128428 3300045051 Bacteria 2642
100 Ga0451576_0357272 3300045051 Bacteria 1530
101 Ga0451576_0683898 3300045051 Bacteria 1078
102 Ga0495592_0123842 3300046454 Bacteria 1816
103 Ga0495651_0279018 3300046462 Bacteria 1130
104 Ga0495582_0021313 3300046473 Bacteria 3547
105 Ga0495608_0023016 3300046511 Bacteria 4272
106 Ga0495644_0015594 3300046523 Bacteria 2912
107 Ga0495587_0129154 3300046536 Bacteria 1445
108 Ga0495667_0017312 3300046559 Bacteria 4868
109 Ga0495634_0054033 3300046642 Bacteria 2689
110 Ga0495659_0000680 3300046664 Bacteria 12335
111 Ga0495658_0015666 3300046683 Bacteria 3892
112 Ga0495613_0001011 3300046689 Bacteria 21395
113 Ga0495613_0069383 3300046689 Bacteria 2570
114 Ga0495604_0051469 3300047317 Bacteria 3192
115 Ga0495614_0021080 3300048089 Bacteria 2817
116 Ga0501033_0121911 3300049570 Bacteria 1892
117 Ga0501040_0176016 3300049576 Bacteria 1516
118 Ga0501040_0306160 3300049576 Bacteria 1136
119 Ga0501041_0149136 3300049577 Bacteria 1460
120 Ga0501041_0156490 3300049577 Bacteria 1424
121 Ga0501043_0087094 3300049579 Bacteria 2454
122 nmdc:mga09592_192829_c1 3300050508 Bacteria 1764
123 nmdc:mga09592_260656_c1 3300050508 Bacteria 1503
124 nmdc:mga0qj67_39254_c1 3300050509 Bacteria 3717
125 nmdc:mga06r32_150150_c1 3300050510 Bacteria 2308
126 nmdc:mga08y16_13775_c1 3300050511 Bacteria 8512
127 nmdc:mga08y16_315903_c1 3300050511 Bacteria 1609
128 nmdc:mga08y16_36085_c1 3300050511 Bacteria 5192
129 nmdc:mga0n895_111466_c1 3300050512 Bacteria 2752
130 nmdc:mga0n895_23359_c1 3300050512 Bacteria 5811
131 nmdc:mga0n895_42567_c1 3300050512 Bacteria 4419
132 nmdc:mga0n895_65_c1 3300050512 Bacteria 62135
133 nmdc:mga0rr50_103_c1 3300050513 Bacteria 47861
134 nmdc:mga08x19_11017_c1 3300050514 Bacteria 5441
135 nmdc:mga0a205_149170_c1 3300050515 Unclassified 2238
136 nmdc:mga0a205_16784_c1 3300050515 Bacteria 6856
137 nmdc:mga0a205_20_c1 3300050515 Bacteria 93523
138 nmdc:mga0a205_228721_c1 3300050515 Bacteria 1744
139 nmdc:mga0a205_37771_c1 3300050515 Bacteria 4644
140 Ga0495601_0023704 3300053077 Bacteria 3773
141 Ga0495619_0007861 3300053085 Bacteria 6746
142 Ga0500555_000037 3300053103 Bacteria 73513

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005330 Ga0070690_100069518 Ga0070690_1000695182 284
2 3300006852 Ga0075433_10027856 Ga0075433_100278563 292
3 3300006871 Ga0075434_100108605 Ga0075434_1001086052 292
4 3300037853 Ga0436364_1268596 Ga0436364_1268596_491_1369 292
5 3300050512 nmdc:mga0n895_111466_c1 nmdc:mga0n895_111466_c1_1323_2246 292
6 3300050515 nmdc:mga0a205_37771_c1 nmdc:mga0a205_37771_c1_2143_3066 292
7 3300036647 Ga0316582_0354194 Ga0316582_0354194_22_915 295
8 3300036712 Ga0316584_0080155 Ga0316584_0080155_1058_1951 295
9 3300049579 Ga0501043_0087094 Ga0501043_0087094_286_1191 298
10 3300031251 Ga0265327_10014022 Ga0265327_100140223 299
11 3300025924 Ga0207694_10080184 Ga0207694_100801842 300
12 3300031090 Ga0265760_10003354 Ga0265760_100033543 300
13 3300044712 Ga0453684_0374470 Ga0453684_0374470_308_1216 301
14 3300050508 nmdc:mga09592_260656_c1 nmdc:mga09592_260656_c1_542_1465 301
15 3300006028 Ga0070717_10047784 Ga0070717_100477845 304
16 3300005335 Ga0070666_10168693 Ga0070666_101686932 305
17 3300031711 Ga0265314_10011326 Ga0265314_100113266 305
18 3300044712 Ga0453684_0006491 Ga0453684_0006491_276_1193 305
19 3300044712 Ga0453684_0172755 Ga0453684_0172755_605_1522 305
20 3300005445 Ga0070708_100088576 Ga0070708_1000885762 306
21 3300006847 Ga0075431_100012618 Ga0075431_1000126183 306
22 3300013308 Ga0157375_10009191 Ga0157375_100091915 306
23 3300042876 Ga0451577_0000380 Ga0451577_0000380_1973_2893 306
24 3300044712 Ga0453684_0000039 Ga0453684_0000039_504423_505343 306
25 3300050512 nmdc:mga0n895_65_c1 nmdc:mga0n895_65_c1_46740_47660 306
26 3300050513 nmdc:mga0rr50_103_c1 nmdc:mga0rr50_103_c1_17167_18087 306
27 3300050514 nmdc:mga08x19_11017_c1 nmdc:mga08x19_11017_c1_4475_5395 306
28 3300050515 nmdc:mga0a205_20_c1 nmdc:mga0a205_20_c1_57491_58411 306
29 3300005439 Ga0070711_100209611 Ga0070711_1002096111 307
30 3300006844 Ga0075428_100002066 Ga0075428_1000020664 307
31 3300006846 Ga0075430_100129360 Ga0075430_1001293602 307
32 3300006871 Ga0075434_100310071 Ga0075434_1003100712 307
33 3300006880 Ga0075429_100262501 Ga0075429_1002625012 307
34 3300009094 Ga0111539_10013091 Ga0111539_100130913 307
35 3300009094 Ga0111539_10208062 Ga0111539_102080622 307
36 3300009553 Ga0105249_10602087 Ga0105249_106020871 307
37 3300014326 Ga0157380_10324466 Ga0157380_103244662 307
38 3300014969 Ga0157376_10131199 Ga0157376_101311992 307
39 3300025906 Ga0207699_10018548 Ga0207699_100185483 307
40 3300027907 Ga0207428_10016128 Ga0207428_100161283 307
41 3300028653 Ga0265323_10037776 Ga0265323_100377763 307
42 3300031344 Ga0265316_10008475 Ga0265316_100084755 307
43 3300031344 Ga0265316_10054177 Ga0265316_100541772 307
44 3300031712 Ga0265342_10000013 Ga0265342_1000001377 307
45 3300031852 Ga0307410_10448537 Ga0307410_104485371 307
46 3300035695 Ga0373927_0324510 Ga0373927_0324510_59_982 307
47 3300045051 Ga0451576_0357272 Ga0451576_0357272_289_1257 307
48 3300046454 Ga0495592_0123842 Ga0495592_0123842_858_1790 307
49 3300046462 Ga0495651_0279018 Ga0495651_0279018_26_955 307
50 3300046511 Ga0495608_0023016 Ga0495608_0023016_1322_2254 307
51 3300046536 Ga0495587_0129154 Ga0495587_0129154_21_953 307
52 3300046559 Ga0495667_0017312 Ga0495667_0017312_1642_2574 307
53 3300046642 Ga0495634_0054033 Ga0495634_0054033_967_1899 307
54 3300046683 Ga0495658_0015666 Ga0495658_0015666_2713_3645 307
55 3300046689 Ga0495613_0001011 Ga0495613_0001011_13276_14208 307
56 3300047317 Ga0495604_0051469 Ga0495604_0051469_1461_2393 307
57 3300050511 nmdc:mga08y16_315903_c1 nmdc:mga08y16_315903_c1_155_1123 307
58 3300050511 nmdc:mga08y16_36085_c1 nmdc:mga08y16_36085_c1_2105_3073 307
59 3300050512 nmdc:mga0n895_23359_c1 nmdc:mga0n895_23359_c1_4488_5414 307
60 3300050515 nmdc:mga0a205_149170_c1 nmdc:mga0a205_149170_c1_721_1689 307
61 3300050515 nmdc:mga0a205_228721_c1 nmdc:mga0a205_228721_c1_542_1468 307
62 3300053077 Ga0495601_0023704 Ga0495601_0023704_779_1711 307
63 3300053085 Ga0495619_0007861 Ga0495619_0007861_1619_2551 307
64 3300005545 Ga0070695_100000532 Ga0070695_10000053216 308
65 3300006844 Ga0075428_100002683 Ga0075428_1000026834 308
66 3300006846 Ga0075430_100252030 Ga0075430_1002520302 308
67 3300009094 Ga0111539_10017264 Ga0111539_100172644 308
68 3300014326 Ga0157380_10155000 Ga0157380_101550002 308
69 3300014745 Ga0157377_10161859 Ga0157377_101618592 308
70 3300027907 Ga0207428_10056743 Ga0207428_100567432 308
71 3300035083 Ga0373926_0035711 Ga0373926_0035711_666_1595 308
72 3300035692 Ga0373935_0173581 Ga0373935_0173581_489_1418 308
73 3300035695 Ga0373927_0005108 Ga0373927_0005108_94_1023 308
74 3300037068 Ga0373925_0000354 Ga0373925_0000354_14401_15330 308
75 3300037418 Ga0395900_0033247 Ga0395900_0033247_545_1486 308
76 3300038443 Ga0395901_0054256 Ga0395901_0054256_1237_2178 308
77 3300049576 Ga0501040_0176016 Ga0501040_0176016_48_983 308
78 3300049577 Ga0501041_0149136 Ga0501041_0149136_102_1037 308
79 3300050509 nmdc:mga0qj67_39254_c1 nmdc:mga0qj67_39254_c1_2344_3279 308
80 3300050511 nmdc:mga08y16_13775_c1 nmdc:mga08y16_13775_c1_957_1892 308
81 3300005445 Ga0070708_100000700 Ga0070708_10000070018 310
82 3300005468 Ga0070707_100333158 Ga0070707_1003331581 310
83 3300005518 Ga0070699_100140355 Ga0070699_1001403552 310
84 3300025922 Ga0207646_10130263 Ga0207646_101302632 310
85 3300005843 Ga0068860_100368027 Ga0068860_1003680272 311
86 3300028381 Ga0268264_10380199 Ga0268264_103801991 311
87 3300026088 Ga0207641_10280918 Ga0207641_102809182 312
88 3300031240 Ga0265320_10006458 Ga0265320_100064582 312
89 3300031249 Ga0265339_10004169 Ga0265339_100041698 312
90 3300031250 Ga0265331_10007228 Ga0265331_100072283 312
91 3300031711 Ga0265314_10011107 Ga0265314_100111076 312
92 3300042876 Ga0451577_0005699 Ga0451577_0005699_6627_7571 312
93 3300045051 Ga0451576_0013983 Ga0451576_0013983_5400_6344 312
94 3300049570 Ga0501033_0121911 Ga0501033_0121911_61_1071 312
95 3300049576 Ga0501040_0306160 Ga0501040_0306160_22_1032 312
96 3300049577 Ga0501041_0156490 Ga0501041_0156490_224_1234 312
97 3300053103 Ga0500555_000037 Ga0500555_000037_41812_42762 312
98 3300050508 nmdc:mga09592_192829_c1 nmdc:mga09592_192829_c1_44_994 313
99 3300006844 Ga0075428_100027977 Ga0075428_1000279774 314
100 3300006847 Ga0075431_100385396 Ga0075431_1003853962 314
101 3300006852 Ga0075433_10021031 Ga0075433_100210312 314
102 3300006871 Ga0075434_100013309 Ga0075434_1000133093 314
103 3300044673 Ga0453683_0049809 Ga0453683_0049809_1275_2243 314
104 3300050510 nmdc:mga06r32_150150_c1 nmdc:mga06r32_150150_c1_185_1138 314
105 3300050512 nmdc:mga0n895_42567_c1 nmdc:mga0n895_42567_c1_2846_3799 314
106 3300050515 nmdc:mga0a205_16784_c1 nmdc:mga0a205_16784_c1_4100_5053 314
107 3300005331 Ga0070670_100013987 Ga0070670_1000139874 315
108 3300005365 Ga0070688_100143737 Ga0070688_1001437372 315
109 3300005438 Ga0070701_10092860 Ga0070701_100928601 315
110 3300005441 Ga0070700_100340575 Ga0070700_1003405751 315
111 3300005459 Ga0068867_100033674 Ga0068867_1000336742 315
112 3300005577 Ga0068857_100018384 Ga0068857_1000183843 315
113 3300014745 Ga0157377_10166774 Ga0157377_101667742 315
114 3300026116 Ga0207674_10008213 Ga0207674_1000821314 315
115 3300045051 Ga0451576_0683898 Ga0451576_0683898_118_1065 315
116 3300046473 Ga0495582_0021313 Ga0495582_0021313_916_1863 315
117 3300046523 Ga0495644_0015594 Ga0495644_0015594_1417_2382 315
118 3300046664 Ga0495659_0000680 Ga0495659_0000680_7335_8300 315
119 3300046689 Ga0495613_0069383 Ga0495613_0069383_1016_1963 315
120 3300005336 Ga0070680_100326812 Ga0070680_1003268121 316
121 3300005406 Ga0070703_10009140 Ga0070703_100091403 316
122 3300005440 Ga0070705_100014025 Ga0070705_1000140253 316
123 3300005468 Ga0070707_100146431 Ga0070707_1001464312 316
124 3300005471 Ga0070698_100385169 Ga0070698_1003851692 316
125 3300005518 Ga0070699_100001681 Ga0070699_1000016812 316
126 3300005546 Ga0070696_100005531 Ga0070696_1000055312 316
127 3300006852 Ga0075433_10000243 Ga0075433_1000024326 316
128 3300006852 Ga0075433_10008157 Ga0075433_100081572 316
129 3300006871 Ga0075434_100000090 Ga0075434_10000009041 316
130 3300006914 Ga0075436_100004054 Ga0075436_1000040546 316
131 3300007076 Ga0075435_100000096 Ga0075435_1000000961 316
132 3300025885 Ga0207653_10013400 Ga0207653_100134001 316
133 3300025917 Ga0207660_10280704 Ga0207660_102807042 316
134 3300036647 Ga0316582_0207475 Ga0316582_0207475_22_981 316
135 3300005471 Ga0070698_100382861 Ga0070698_1003828611 317
136 3300005536 Ga0070697_100252382 Ga0070697_1002523822 317
137 3300006914 Ga0075436_100090492 Ga0075436_1000904923 317
138 3300015262 Ga0182007_10040088 Ga0182007_100400881 317
139 3300045051 Ga0451576_0128428 Ga0451576_0128428_577_1539 317
140 3300048089 Ga0495614_0021080 Ga0495614_0021080_1693_2673 317
141 3300003203 JGI25406J46586_10001692 JGI25406J46586_100016924 318
142 3300005985 Ga0081539_10000029 Ga0081539_1000002932 318

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02511

Thy1

Thymidylate synthase complementing protein

85

285

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
7tj4-assembly2.cif.gz_C structure of the s. aureus amidase lyth and activator acth extracellular domains 0.9181 255 284
4kar-assembly1.cif.gz_B crystal structure of fdts (tm0449) mutant (h53d) with fad 0.9121 33 255
1kq4-assembly1.cif.gz_A crystal structure of a thy1-complementing protein (tm0449) from thermotoga maritima at 2.25 a resolution 0.9111 33 255
1o2a-assembly1.cif.gz_A crystal structure of thymidylate synthase complementing protein (tm0449) from thermotoga maritima with fad at 1.8 a resolution 0.9019 33 255
5ioq-assembly1.cif.gz_A flavin-dependent thymidylate synthase in complex with fad and deoxyuridine 0.8979 33 255
ID Description Score Start End Superfamily
4fzbK02 Mainly Alpha;Up-down Bundle;Single alpha-helices involved in coiled-coils or other helix-helix interfaces; 0.9888 153 193 1.20.5.3070
4fzbD02 Mainly Alpha;Up-down Bundle;Single alpha-helices involved in coiled-coils or other helix-helix interfaces; 0.9832 155 193 1.20.5.3070
4fzbG02 Mainly Alpha;Up-down Bundle;Single alpha-helices involved in coiled-coils or other helix-helix interfaces; 0.9826 158 193 1.20.5.3070
4fzbL02 Mainly Alpha;Up-down Bundle;Single alpha-helices involved in coiled-coils or other helix-helix interfaces; 0.9819 153 193 1.20.5.3070
4fzbI02 Mainly Alpha;Up-down Bundle;Single alpha-helices involved in coiled-coils or other helix-helix interfaces; 0.9817 153 193 1.20.5.3070
ID Description Score Start End GO Terms
AF-A0A5N9CD48-F1-model_v4 FAD-dependent thymidylate synthase (EC 2.1.1.148) 0.9691 138 247 GO:0004799
GO:0006231
GO:0032259
GO:0050660
GO:0050797
GO:0070402
AF-A0A3M1BXD5-F1-model_v4 Thymidylate synthase (FAD) 0.9678 138 237 GO:0004799
GO:0006231
GO:0050660
GO:0050797
GO:0070402
AF-A0A059X8M0-F1-model_v4 Thymidylate synthase complementing protein 0.967 138 249 GO:0004799
GO:0006231
GO:0050660
GO:0050797
GO:0070402
AF-A0A2G6G2Y9-F1-model_v4 Flavin-dependent thymidylate synthase (FDTS) (EC 2.1.1.148) (FAD-dependent thymidylate synthase) (Thymidylate synthase ThyX) (TS) (TSase) 0.9463 18 318 GO:0004799
GO:0006231
GO:0006235
GO:0032259
GO:0050660
GO:0050797
GO:0070402
AF-A0A7K4H4V6-F1-model_v4 Flavin-dependent thymidylate synthase (FDTS) (EC 2.1.1.148) (FAD-dependent thymidylate synthase) (Thymidylate synthase ThyX) (TS) (TSase) 0.938 35 248 GO:0004799
GO:0006231
GO:0006235
GO:0032259
GO:0050660
GO:0050797
GO:0070402

Feature Viewer

pLDDT pTM Quality
85.59 0.82 High
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Predicted Structure (AlphaFold2)

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