F184267

General Info

Members Datasets Scaffolds Average Seq Length
141 126 93 431

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8055157932|8055162787
Length 487
Sequence GGVTAQMSGSAPEVVPEAVPEPARVANPHPDRLARPGGDLGDLGDLGDLGDLGGSDGAGAREVAGDLVARDQRVVWHPYAPPAAAPLFAVAQASGVRLRLTDGRELIDGMSSWWAAIHGYRHPVLDAAAHRQLTDMSHVMFGGLTHEPAVRLAETLVEMTPRPLRRVFFSDSGSVAVEVAIKMALQYWTGRGRPRRTRLLTIRRGYHGDTSGAMAVCDPDAGMHHLFSHLLPQHIFAPPPTCGFDEACEDVHLAEFAALLAAHAHEVAAVILEPVVQGTGAMRFYAPEWLARVRALCDEHEVLLIADEIAVGFGRSGALFGCDHAGISPDIMCVGKALTGGYLSLAATLCTDEVADGVAASPVGAFMHGPTFMANPLACAIALANVELLLASPWRERVGALERGLRTGLAPARALSGVADVRVLGAIGVIETREPVDMAVIQPLLVELGVWVRPFGRLVYTMPPYITTSDDLATLTTAMVEAVARTT

Samples

Sample ID Description Type Environment
1 2506783011 Frankia datiscae Dg1 Isolate Nodule
2 2508501039 Frankia saprophytica CN3 Isolate Nodule
3 2517572101 Frankia sp. DC12 Isolate Nodule
4 2527291627 Frankia casuarinae Thr Isolate Nodule
5 2527291629 Frankia sp. BMG5.23 Isolate Nodule
6 2546825537 Frankia sp. CcI6 Isolate Rhizoplane
7 2576861822 Frankia sp. CeD Isolate Nodule
8 2579778521 Frankia torreyi CpI1-S Isolate Unclassified
9 2619618881 Frankia sp. ACN1ag Isolate Unclassified
10 2619619003 Frankia sp. CpI1-P Isolate Nodule
11 2626541554 Frankia sp. AvcI.1 Isolate Nodule
12 2643221715 Mycobacterium sp. Root265 Isolate Unclassified
13 2671180195 Frankia sp. CcI49 Isolate Nodule
14 2675902999 Frankia asymbiotica NRRL B-16386 Isolate Nodule
15 2684623035 Frankia sp. NRRL B-16219 Isolate Rhizosphere
16 2684623036 Frankia sp. CgIM4 Isolate Nodule
17 2687453737 Frankia sp. BMG5.36 Isolate Nodule
18 2687453743 Frankia colletiae Cc1.17 Isolate Nodule
19 2710264753 Frankia sp. KB5 Isolate Nodule
20 2773857921 Frankia asymbiotica NRRL B-16386 Isolate Nodule
21 2773857922 Frankia sp. CcI49 Isolate Nodule
22 2773857924 Frankia sp. CgIS1 Isolate Nodule
23 2773857933 Frankia sp. BMG5.30 Isolate Nodule
24 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
25 2802429296 Streptomyces sampsonii KJ40 Isolate Rhizosphere
26 2857740372 Paenarthrobacter sp. R-74611 Isolate Unclassified
27 2884693830 Nonomuraea phyllanthi WYY166 Isolate Unclassified
28 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified
29 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
30 2899359706 Amycolatopsis anabasis EGI 650086 Isolate Unclassified
31 2902810491 Mycolicibacterium sp. P9-22 Isolate Unclassified
32 2933418574 Jeotgalibacillus campisalis 4120 Isolate Rhizosphere
33 2984523437 Rhodococcus sp. SORGH_AS303 Isolate Aerial Root
34 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified
35 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
36 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
37 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
38 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
39 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
40 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
41 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
42 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
43 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
44 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
45 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
46 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
47 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
49 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
51 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
52 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
53 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
54 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
65 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
66 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
67 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
68 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
69 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
70 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
71 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
72 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
73 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
74 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
75 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
76 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
77 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
78 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
79 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
80 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
81 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
82 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
83 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
84 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
85 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
86 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
87 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
88 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
89 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
90 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
91 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
92 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
93 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
94 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
95 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
96 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
97 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
98 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
99 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
100 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
101 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
102 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
103 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
106 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
107 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
108 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
109 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
110 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
111 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
112 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
113 637000116 Frankia casuarinae CcI3 Isolate Nodule
114 8002775197 Frankia nepalensis CN7 Isolate Nodule
115 8002784119 Frankia sp. AgB1.9 Isolate Nodule
116 8025413630 Streptomyces sp. CAI-17 Isolate Rhizosphere
117 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
118 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
119 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
120 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
121 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
122 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
123 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
124 8054913762 Frankia gtarii Agncl-10 Isolate Nodule
125 8054920844 Frankia tisae Agncl-8 Isolate Nodule
126 8055157932 Frankia umida Ag45/Mut15 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 65.96
Metatranscriptomes 0
Isolates 34.04

Biome Distribution

Category Percentage (%)
Aerial Root 0.71
Bulb 0
Endosphere 2.13
Nodule 17.02
Rhizoplane 2.84
Rhizosphere 56.74
Stem 0
Stem Tuber 0
Unclassified 20.57

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070714_100000428 3300005435 Bacteria 30485
2 Ga0070713_100013263 3300005436 Bacteria 6077
3 Ga0070700_100000010 3300005441 Bacteria 176885
4 Ga0068859_100000054 3300005617 Bacteria 123173
5 Ga0068859_100032656 3300005617 Bacteria 5228
6 Ga0068863_100000265 3300005841 Bacteria 54824
7 Ga0068858_100024578 3300005842 Bacteria 5613
8 Ga0068860_100008677 3300005843 Bacteria 10125
9 Ga0068860_100097564 3300005843 Bacteria 2802
10 Ga0068862_100000037 3300005844 Bacteria 172796
11 Ga0081455_10000046 3300005937 Bacteria 127053
12 Ga0081455_10000962 3300005937 Bacteria 36818
13 Ga0075430_100012603 3300006846 Bacteria 7198
14 Ga0075429_100013084 3300006880 Bacteria 7198
15 Ga0097620_100000054 3300006931 Bacteria 123173
16 Ga0097620_100032657 3300006931 Bacteria 5228
17 Ga0111539_10322158 3300009094 Bacteria 1799
18 Ga0105247_10000125 3300009101 Bacteria 74220
19 Ga0114129_10004855 3300009147 Bacteria 18971
20 Ga0105248_10000018 3300009177 Bacteria 294894
21 Ga0163163_10032816 3300014325 Bacteria 5017
22 Ga0163163_10075858 3300014325 Bacteria 3356
23 Ga0157379_10011250 3300014968 Bacteria 7795
24 Ga0213875_10004007 3300021388 Bacteria 8211
25 Ga0213875_10012885 3300021388 Bacteria 4119
26 Ga0207710_10000149 3300025900 Bacteria 79810
27 Ga0207664_10001149 3300025929 Bacteria 17627
28 Ga0207711_10000062 3300025941 Bacteria 125048
29 Ga0207658_10101946 3300025986 Bacteria 2250
30 Ga0207703_10044381 3300026035 Bacteria 3573
31 Ga0207639_10015630 3300026041 Bacteria 5355
32 Ga0207708_10000009 3300026075 Bacteria 235909
33 Ga0207641_10003452 3300026088 Bacteria 13997
34 Ga0268265_10000008 3300028380 Bacteria 417328
35 Ga0268264_10010166 3300028381 Bacteria 7789
36 Ga0268264_10060964 3300028381 Bacteria 3163
37 Ga0265319_1000088 3300028563 Bacteria 71590
38 Ga0307514_10058426 3300031649 Bacteria 2950
39 Ga0316579_10005244 3300031691 Bacteria 5219
40 Ga0316576_10046505 3300031727 Bacteria 3142
41 Ga0307507_10018288 3300033179 Bacteria 7979
42 Ga0316574_0034570 3300035398 Bacteria 3083
43 Ga0316582_0004388 3300036647 Bacteria 7116
44 Ga0395900_0045200 3300037418 Bacteria 4536
45 Ga0436364_0468355 3300037853 Bacteria 6493
46 Ga0436364_0650597 3300037853 Bacteria 8251
47 Ga0436364_1261448 3300037853 Bacteria 5376
48 Ga0395901_0008912 3300038443 Bacteria 10162
49 Ga0400483_101348 3300039062 Bacteria 4101
50 Ga0400483_274707 3300039062 Bacteria 1985
51 Ga0436365_0838871 3300039437 Bacteria 4543
52 Ga0439465_0015406 3300041413 Bacteria 2385
53 Ga0439431_0000111 3300041997 Bacteria 14062
54 Ga0439434_0000512 3300042435 Bacteria 11051
55 Ga0451577_0002873 3300042876 Bacteria 19799
56 Ga0466969_0026999 3300044656 Bacteria 2942
57 Ga0466961_0033481 3300044693 Bacteria 3301
58 Ga0466963_0087519 3300044694 Bacteria 2118
59 Ga0466963_0185803 3300044694 Bacteria 1452
60 Ga0466957_0012056 3300044842 Bacteria 4997
61 Ga0466960_0102998 3300044901 Bacteria 1473
62 Ga0466967_0005178 3300045976 Bacteria 8977
63 Ga0466967_0028042 3300045976 Bacteria 4695
64 Ga0495618_0050770 3300046514 Bacteria 2621
65 Ga0495648_0071731 3300046524 Bacteria 2006
66 Ga0495665_0029346 3300046531 Bacteria 2947
67 Ga0495640_0005916 3300046533 Bacteria 9700
68 Ga0495640_0019064 3300046533 Bacteria 5072
69 Ga0495657_0015209 3300046675 Bacteria 5635
70 Ga0495613_0004316 3300046689 Bacteria 10645
71 Ga0495676_0009368 3300047321 Bacteria 8920
72 Ga0495675_0065452 3300047444 Bacteria 2299
73 Ga0495686_0005301 3300047472 Bacteria 10220
74 Ga0496102_0086882 3300048905 Bacteria 2889
75 Ga0496108_0276339 3300048911 Bacteria 1462
76 Ga0496116_0000174 3300048919 Bacteria 129255
77 Ga0496117_0015742 3300048920 Bacteria 6423
78 Ga0496118_0050771 3300048921 Bacteria 3179
79 Ga0496119_0031852 3300048922 Bacteria 3525
80 Ga0496120_0000283 3300048923 Bacteria 85428
81 Ga0496121_0065597 3300048924 Bacteria 2953
82 Ga0501040_0000178 3300049576 Bacteria 36163
83 Ga0501042_0001207 3300049578 Bacteria 14972
84 Ga0501042_0077532 3300049578 Bacteria 2379
85 Ga0501047_0002664 3300049581 Bacteria 16989
86 Ga0501047_0048065 3300049581 Bacteria 4121
87 nmdc:mga05p37_3914_c1 3300050507 Bacteria 17434
88 nmdc:mga09592_1805_c2 3300050508 Bacteria 7263
89 nmdc:mga0qj67_1059_c3 3300050509 Bacteria 7205
90 nmdc:mga06r32_1833_c2 3300050510 Bacteria 17582
91 Ga0500635_0000430 3300053080 Bacteria 12188
92 Ga0500652_000985 3300053131 Bacteria 9378
93 Ga0500616_0001054 3300053153 Bacteria 29128

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300041413 Ga0439465_0015406 Ga0439465_0015406_1322_2368 348
2 3300021388 Ga0213875_10004007 Ga0213875_100040072 383
3 3300037853 Ga0436364_0650597 Ga0436364_0650597_254_1579 383
4 3300053153 Ga0500616_0001054 Ga0500616_0001054_7537_8964 383
5 3300049581 Ga0501047_0002664 Ga0501047_0002664_8645_9907 384
6 3300044694 Ga0466963_0087519 Ga0466963_0087519_740_1960 386
7 3300044694 Ga0466963_0185803 Ga0466963_0185803_203_1441 389
8 3300039437 Ga0436365_0838871 Ga0436365_0838871_24_1334 401
9 3300044901 Ga0466960_0102998 Ga0466960_0102998_33_1253 401
10 3300046514 Ga0495618_0050770 Ga0495618_0050770_41_1273 402
11 3300031649 Ga0307514_10058426 Ga0307514_100584263 403
12 3300005617 Ga0068859_100032656 Ga0068859_1000326563 405
13 3300005842 Ga0068858_100024578 Ga0068858_1000245782 405
14 3300006931 Ga0097620_100032657 Ga0097620_1000326573 405
15 3300026035 Ga0207703_10044381 Ga0207703_100443812 405
16 3300037853 Ga0436364_1261448 Ga0436364_1261448_3296_4594 405
17 3300039062 Ga0400483_101348 Ga0400483_101348_1314_2555 406
18 3300048905 Ga0496102_0086882 Ga0496102_0086882_1293_2648 406
19 3300048919 Ga0496116_0000174 Ga0496116_0000174_47076_48431 406
20 3300048920 Ga0496117_0015742 Ga0496117_0015742_4747_6102 406
21 3300048922 Ga0496119_0031852 Ga0496119_0031852_1548_2903 406
22 3300005617 Ga0068859_100000054 Ga0068859_10000005434 407
23 3300005844 Ga0068862_100000037 Ga0068862_100000037143 407
24 3300006931 Ga0097620_100000054 Ga0097620_10000005434 407
25 3300009177 Ga0105248_10000018 Ga0105248_1000001867 407
26 3300014325 Ga0163163_10075858 Ga0163163_100758582 407
27 3300025941 Ga0207711_10000062 Ga0207711_1000006246 407
28 3300028380 Ga0268265_10000008 Ga0268265_10000008193 407
29 3300037418 Ga0395900_0045200 Ga0395900_0045200_376_1704 407
30 3300038443 Ga0395901_0008912 Ga0395901_0008912_344_1672 407
31 3300048921 Ga0496118_0050771 Ga0496118_0050771_723_2105 407
32 3300006846 Ga0075430_100012603 Ga0075430_1000126038 409
33 3300006880 Ga0075429_100013084 Ga0075429_1000130848 409
34 3300009147 Ga0114129_10004855 Ga0114129_100048558 409
35 3300048924 Ga0496121_0065597 Ga0496121_0065597_994_2424 409
36 3300050507 nmdc:mga05p37_3914_c1 nmdc:mga05p37_3914_c1_10798_12096 409
37 3300050508 nmdc:mga09592_1805_c2 nmdc:mga09592_1805_c2_627_1925 409
38 3300050509 nmdc:mga0qj67_1059_c3 nmdc:mga0qj67_1059_c3_569_1867 409
39 3300050510 nmdc:mga06r32_1833_c2 nmdc:mga06r32_1833_c2_10946_12244 409
40 iso_pu_bacteria 8047710418 8047713598 411
41 3300046524 Ga0495648_0071731 Ga0495648_0071731_381_1967 412
42 3300046531 Ga0495665_0029346 Ga0495665_0029346_489_1781 413
43 iso_pu_bacteria 8054920844 8054922170 413
44 3300033179 Ga0307507_10018288 Ga0307507_100182889 415
45 iso_pu_bacteria 2899359706 2899363486 418
46 3300005843 Ga0068860_100008677 Ga0068860_1000086775 419
47 3300028381 Ga0268264_10010166 Ga0268264_100101665 419
48 iso_pu_bacteria 2579778521 2579858161 420
49 iso_pu_bacteria 2619618881 2619859106 420
50 iso_pu_bacteria 2619619003 2620354156 420
51 iso_pu_bacteria 2684623035 2686537518 420
52 iso_pu_bacteria 2684623036 2686544802 420
53 iso_pu_bacteria 2687453743 2689991310 420
54 iso_pu_bacteria 2710264753 2710601912 420
55 iso_pu_bacteria 2895880812 2895890915 420
56 iso_pu_bacteria 2933418574 2933418678 420
57 iso_pu_bacteria 637000116 637878827 420
58 iso_pu_bacteria 2857740372 2857740772 421
59 iso_pu_bacteria 2984523437 2984525116 421
60 3300009094 Ga0111539_10322158 Ga0111539_103221582 422
61 3300009101 Ga0105247_10000125 Ga0105247_1000012521 422
62 3300014325 Ga0163163_10032816 Ga0163163_100328162 422
63 3300025900 Ga0207710_10000149 Ga0207710_1000014950 422
64 3300025986 Ga0207658_10101946 Ga0207658_101019462 422
65 3300028563 Ga0265319_1000088 Ga0265319_100008830 422
66 3300035398 Ga0316574_0034570 Ga0316574_0034570_528_1814 422
67 3300046533 Ga0495640_0005916 Ga0495640_0005916_1928_3232 422
68 3300046533 Ga0495640_0019064 Ga0495640_0019064_1787_3109 422
69 3300046675 Ga0495657_0015209 Ga0495657_0015209_94_1398 422
70 3300046689 Ga0495613_0004316 Ga0495613_0004316_5807_7111 422
71 3300047321 Ga0495676_0009368 Ga0495676_0009368_4871_6175 422
72 3300047444 Ga0495675_0065452 Ga0495675_0065452_746_2050 422
73 3300048923 Ga0496120_0000283 Ga0496120_0000283_31549_32928 422
74 3300049581 Ga0501047_0048065 Ga0501047_0048065_898_2211 422
75 iso_pu_bacteria 2687453737 2689962383 422
76 iso_pu_bacteria 2802429296 2804843510 422
77 iso_pu_bacteria 2884693830 2884699934 422
78 iso_pu_bacteria 2895442618 2895446770 422
79 iso_pu_bacteria 2902810491 2902814949 422
80 iso_pu_bacteria 3002998708 3003003604 422
81 iso_pu_bacteria 8025413630 8025418665 422
82 iso_pu_bacteria 8025530807 8025535979 422
83 iso_pu_bacteria 8053945823 8053951943 422
84 iso_pu_bacteria 8055157932 8055162787 422
85 3300005937 Ga0081455_10000962 Ga0081455_100009624 423
86 3300014968 Ga0157379_10011250 Ga0157379_100112504 423
87 3300026041 Ga0207639_10015630 Ga0207639_100156305 423
88 3300041997 Ga0439431_0000111 Ga0439431_0000111_839_2131 423
89 3300042435 Ga0439434_0000512 Ga0439434_0000512_2776_4068 423
90 3300042876 Ga0451577_0002873 Ga0451577_0002873_1747_3033 423
91 3300045976 Ga0466967_0028042 Ga0466967_0028042_2492_3784 423
92 3300047472 Ga0495686_0005301 Ga0495686_0005301_7901_9196 423
93 3300048911 Ga0496108_0276339 Ga0496108_0276339_65_1357 423
94 3300049576 Ga0501040_0000178 Ga0501040_0000178_1975_3258 423
95 3300049578 Ga0501042_0001207 Ga0501042_0001207_8704_9987 423
96 3300049578 Ga0501042_0077532 Ga0501042_0077532_51_1334 423
97 iso_pu_bacteria 2506783011 2506866932 423
98 iso_pu_bacteria 2527291627 2528203561 423
99 iso_pu_bacteria 2527291629 2528214319 423
100 iso_pu_bacteria 2546825537 2546948324 423
101 iso_pu_bacteria 2576861822 2579749641 423
102 iso_pu_bacteria 2626541554 2626639119 423
103 iso_pu_bacteria 2643221715 2644633756 423
104 iso_pu_bacteria 2671180195 2671836062 423
105 iso_pu_bacteria 2773857922 2774854218 423
106 iso_pu_bacteria 2773857924 2774863643 423
107 iso_pu_bacteria 2773857933 2774903709 423
108 iso_pu_bacteria 8054913762 8054915256 423
109 3300005841 Ga0068863_100000265 Ga0068863_10000026543 424
110 3300026088 Ga0207641_10003452 Ga0207641_100034528 424
111 3300031691 Ga0316579_10005244 Ga0316579_100052441 424
112 3300036647 Ga0316582_0004388 Ga0316582_0004388_5506_6816 424
113 3300044656 Ga0466969_0026999 Ga0466969_0026999_48_1346 424
114 3300044693 Ga0466961_0033481 Ga0466961_0033481_905_2200 424
115 3300044842 Ga0466957_0012056 Ga0466957_0012056_3368_4663 424
116 3300045976 Ga0466967_0005178 Ga0466967_0005178_609_1904 424
117 iso_pu_bacteria 2508501039 2508674001 424
118 iso_pu_bacteria 2517572101 2517764690 424
119 iso_pu_bacteria 2675902999 2676198935 424
120 iso_pu_bacteria 2773857921 2774843513 424
121 iso_pu_bacteria 8002775197 8002777225 424
122 iso_pu_bacteria 8002784119 8002784167 424
123 3300005937 Ga0081455_10000046 Ga0081455_1000004697 425
124 3300053080 Ga0500635_0000430 Ga0500635_0000430_7370_8692 425
125 3300053131 Ga0500652_000985 Ga0500652_000985_7626_8948 425
126 3300005441 Ga0070700_100000010 Ga0070700_10000001030 426
127 3300005843 Ga0068860_100097564 Ga0068860_1000975642 426
128 3300026075 Ga0207708_10000009 Ga0207708_1000000973 426
129 3300028381 Ga0268264_10060964 Ga0268264_100609642 426
130 3300031727 Ga0316576_10046505 Ga0316576_100465052 426
131 3300039062 Ga0400483_274707 Ga0400483_274707_320_1645 426
132 3300021388 Ga0213875_10012885 Ga0213875_100128852 427
133 3300037853 Ga0436364_0468355 Ga0436364_0468355_62_1432 427
134 iso_pu_bacteria 2791355406 2793976561 427
135 iso_pu_bacteria 8047893842 8047894473 427
136 iso_pu_bacteria 8048356638 8048364579 427
137 iso_pu_bacteria 8048369669 8048371490 427
138 iso_pu_bacteria 8048379754 8048380291 427
139 3300005435 Ga0070714_100000428 Ga0070714_10000042823 428
140 3300005436 Ga0070713_100013263 Ga0070713_1000132637 428
141 3300025929 Ga0207664_10001149 Ga0207664_1000114911 428

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00202

Aminotran_3

Aminotransferase class-III

79

483

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
3tfu-assembly1.cif.gz_B crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, post-reaction complex with a 3,6-dihydropyrid-2-one heterocycle inhibitor 0.9692 1 424
3lv2-assembly1.cif.gz_A crystal structure of mycobacterium tuberculosis 7,8-diaminopelargonic acid synthase in complex with substrate analog sinefungin 0.9682 1 421
6ed7-assembly3.cif.gz_E crystal structure of 7,8-diaminopelargonic acid synthase bound to inhibitor mac13772 0.9665 4 419
1mlz-assembly1.cif.gz_B crystal structure of 7,8-diaminopelargonic acid synthase in complex with the trans-isomer of amiclenomycin. 0.9664 4 419
4cxq-assembly1.cif.gz_A mycobaterium tuberculosis transaminase bioa complexed with substrate kapa 0.9661 1 423
ID Description Score Start End Superfamily
af_P9WQ81_343_427_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9926 334 416 3.90.1150.10
1mgvA02 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9594 62 325 3.40.640.10
af_P9WQ81_343_427_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9582 334 416 3.90.1150.10
af_P12995_334_423_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9538 334 419 3.90.1150.10
af_Q5A975_338_424_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9444 334 416 3.90.1150.10
ID Description Score Start End GO Terms
AF-A0A2T0K4V2-F1-model_v4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) (7,8-diamino-pelargonic acid aminotransferase) (DAPA AT) (DAPA aminotransferase) (7,8-diaminononanoate synthase) (DANS) (Diaminopelargonic acid synthase) 0.9782 4 423 GO:0004015
GO:0005737
GO:0009102
GO:0030170
AF-A0A3B8ZSZ2-F1-model_v4 deleted 0.9774 203 421
AF-A0A379BIX6-F1-model_v4 deleted 0.9773 1 422
AF-A0A382YU12-F1-model_v4 7,8-diamino-pelargonic acid aminotransferase 0.9767 184 419 GO:0004015
GO:0009102
GO:0030170
AF-A0A2T3VD71-F1-model_v4 deleted 0.9694 1 422

Feature Viewer

pLDDT pTM Quality
88.5 0.9 High
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Predicted Structure (AlphaFold2)

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