F184243

General Info

Members Datasets Scaffolds Average Seq Length
141 133 109 384

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2989349275|2989353464
Length 423
Sequence IDDGEMRMLKILVVYGTRPEAVKMAPLIDALRQSRCCRPVIAVTGQHREMLDQVNHLFGIEPDFDLNIITQSQTLETITSRVLAGVSAVIERESPDALVVQGDTTTCFAAGLAAFYHKVPLIHLEAGLRTGNRDNPFPEELNRRLTSQLAMLHLAPTSTAKANLLRDGIAESDIVVTGNTVIDALLHVSGRNSVSDNPELNGVFDRPTVLITAHRRESWGEPMARTARAIARLARDFPHMNFLLPAHLNPAVRDVLLPPLAGLENVRITRPLDYRDFVSAMRDCMLVLTDSGGVQEEAPTFGKPVLVLRETTERPEAVTAGTARLIGTDEDAVVNAVTELLRDGDAYRRMARAVNPYGDGLAARRSTQAIEHFFGLADRPDEFTGLAPAAPLPIVLDVRSVPQTAHPGAFVRNGSALDTAHVG

Samples

Sample ID Description Type Environment
1 2513237159 Rhizobium giardinii bv. giardinii H152 Isolate Nodule
2 2534681796 Rhizobium grahamii CCGE 502 Isolate Nodule
3 2582581283 Rhizobium sp. OK665 Isolate Rhizosphere
4 2582581306 Rhizobium sp. YR295 Isolate Rhizosphere
5 2582581865 Rhizobium sp. CF258 Isolate Rhizosphere
6 2582581866 Rhizobium sp. CF097 Isolate Rhizosphere
7 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
8 2643221607 Rhizobium sp. Root73 Isolate Unclassified
9 2643221636 Rhizobium sp. Root1204 Isolate Unclassified
10 2643221637 Rhizobium sp. Root1212 Isolate Unclassified
11 2643221686 Rhizobium sp. Root1334 Isolate Unclassified
12 2643221689 Rhizobium sp. Root483D2 Isolate Unclassified
13 2643221718 Rhizobium sp. Root268 Isolate Unclassified
14 2657244999 Sinorhizobium sojae CCBAU 05684 Isolate Unclassified
15 2802429268 Sinorhizobium sojae CCBAU 05684 Isolate Unclassified
16 2808606522 Amycolatopsis sp. BJA-103 Isolate Unclassified
17 2838074704 Sinorhizobium terangae SEMIA 6460 Isolate Unclassified
18 2842521101 Rhizobium giardinii SEMIA 4084 Isolate Nodule
19 2881644220 Siminovitchia terrae LMG 29736 Isolate Rhizosphere
20 2915768154 Amycolatopsis pittospori PIP199 Isolate Unclassified
21 2989349275 Shinella kummerowiae CCBAU 25048 Isolate Unclassified
22 2989771324 Rhizobium rhizolycopersici DBTS2 Isolate Rhizosphere
23 3006984091 Lederbergia citrea FJAT-49754 Isolate Rhizosphere
24 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
25 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
26 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
27 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
28 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
29 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
30 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
31 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
32 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
33 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
34 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
35 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
36 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
37 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
38 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
39 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
40 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
41 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
42 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
43 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
44 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
45 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
46 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
47 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
48 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
49 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
50 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
51 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
52 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
53 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
54 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
55 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
56 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
57 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
58 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
59 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
70 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
73 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
74 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
75 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
76 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
77 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
78 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
79 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
80 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
81 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
82 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
83 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
84 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
85 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
86 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
87 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
88 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
89 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
90 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
91 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
92 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
93 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
94 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
95 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
96 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
97 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
98 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
99 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
100 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
101 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
102 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
103 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
104 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
105 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
106 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
107 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
108 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
109 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
110 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
111 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
112 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
113 3300053100 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 endosphere Metagenome Endosphere
114 3300053101 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 endosphere Metagenome Endosphere
115 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
116 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
117 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
118 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
119 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
120 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
121 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
122 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
123 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
124 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
125 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
126 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified
127 8005542996 Rhizobium grahamii CCGM3 Isolate Unclassified
128 8007371054 Clostridium sp. YIM B02515 Isolate Unclassified
129 8007375930 Clostridium sp. YIM B02565 Isolate Unclassified
130 8025478263 Streptomyces telluris AA8 Isolate Rhizosphere
131 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
132 8056447290 Streptomyces huiliensis SCA2-4 Isolate Rhizosphere
133 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 77.3
Metatranscriptomes 0
Isolates 22.7

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.77
Nodule 2.13
Rhizoplane 0.71
Rhizosphere 63.12
Stem 0
Stem Tuber 0
Unclassified 21.28

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10119443 3300003316 Bacteria 1749
2 rootL2_10169407 3300003322 Bacteria 5102
3 Ga0055540_1003085 3300003792 Bacteria 8286
4 Ga0070658_10001805 3300005327 Bacteria 17995
5 Ga0070676_10015919 3300005328 Bacteria 4150
6 Ga0070683_100042938 3300005329 Bacteria 4165
7 Ga0070666_10001398 3300005335 Bacteria 14573
8 Ga0070714_100001456 3300005435 Bacteria 17256
9 Ga0070708_100046328 3300005445 Bacteria 3837
10 Ga0070706_100069434 3300005467 Bacteria 3258
11 Ga0070707_100197339 3300005468 Bacteria 1962
12 Ga0070698_100005722 3300005471 Bacteria 13599
13 Ga0070699_100034964 3300005518 Bacteria 4343
14 Ga0070697_100000332 3300005536 Bacteria 37171
15 Ga0070696_100072806 3300005546 Bacteria 2420
16 Ga0070665_100000292 3300005548 Bacteria 79257
17 Ga0068859_100064069 3300005617 Bacteria 3708
18 Ga0068864_100169892 3300005618 Bacteria 1987
19 Ga0068861_100328961 3300005719 Bacteria 1333
20 Ga0068860_100018453 3300005843 Bacteria 6786
21 Ga0075365_10010876 3300006038 Bacteria 5327
22 Ga0070715_10000037 3300006163 Bacteria 71762
23 Ga0075428_100026448 3300006844 Bacteria 6422
24 Ga0075431_100080077 3300006847 Bacteria 3372
25 Ga0075434_100013052 3300006871 Bacteria 7889
26 Ga0075434_100226264 3300006871 Bacteria 1890
27 Ga0075436_100000585 3300006914 Bacteria 23849
28 Ga0097620_100064069 3300006931 Bacteria 3708
29 Ga0111539_10002501 3300009094 Bacteria 24368
30 Ga0105243_10005837 3300009148 Bacteria 9546
31 Ga0105242_10002514 3300009176 Bacteria 14392
32 Ga0105249_10029781 3300009553 Bacteria 4932
33 Ga0105246_10047903 3300011119 Unclassified 2921
34 Ga0163163_10332733 3300014325 Bacteria 1573
35 Ga0157380_10005837 3300014326 Bacteria 8618
36 Ga0213871_10009357 3300021441 Bacteria 2193
37 Ga0209051_1000790 3300025303 Bacteria 33281
38 Ga0207680_10004541 3300025903 Bacteria 6588
39 Ga0207685_10000035 3300025905 Bacteria 66046
40 Ga0207705_10008431 3300025909 Bacteria 7524
41 Ga0207684_10038673 3300025910 Bacteria 4048
42 Ga0207664_10015050 3300025929 Bacteria 5603
43 Ga0207686_10145354 3300025934 Bacteria 1644
44 Ga0207670_10107546 3300025936 Bacteria 2003
45 Ga0207689_10013804 3300025942 Bacteria 6884
46 Ga0207676_10113237 3300026095 Bacteria 2274
47 Ga0207676_10340150 3300026095 Bacteria 1384
48 Ga0207428_10117569 3300027907 Bacteria 2041
49 Ga0268266_10000885 3300028379 Bacteria 38797
50 Ga0268264_10273766 3300028381 Bacteria 1578
51 Ga0307517_10001618 3300028786 Bacteria 37446
52 Ga0307515_10020086 3300028794 Bacteria 11957
53 Ga0265332_10003013 3300031238 Bacteria 8264
54 Ga0265316_10001885 3300031344 Bacteria 22020
55 Ga0307509_10188061 3300031507 Bacteria 1920
56 Ga0307508_10004850 3300031616 Bacteria 12952
57 Ga0307508_10020115 3300031616 Bacteria 6063
58 Ga0265342_10000105 3300031712 Bacteria 94078
59 Ga0307516_10059479 3300031730 Bacteria 3716
60 Ga0307518_10001238 3300031838 Bacteria 19162
61 Ga0307507_10051112 3300033179 Bacteria 3981
62 Ga0307507_10076611 3300033179 Bacteria 2981
63 Ga0395905_0001478 3300037471 Bacteria 28142
64 Ga0436361_0213845 3300039447 Bacteria 17348
65 Ga0436361_0573255 3300039447 Bacteria 11361
66 Ga0451795_1561661 3300041456 Bacteria 1461
67 Ga0466972_0030481 3300044658 Bacteria 2654
68 Ga0453683_0017459 3300044673 Unclassified 4620
69 Ga0466961_0011902 3300044693 Bacteria 5561
70 Ga0453684_0000171 3300044712 Bacteria 286600
71 Ga0453684_0014501 3300044712 Bacteria 12590
72 Ga0451576_0000229 3300045051 Bacteria 136407
73 Ga0495629_0312714 3300046459 Bacteria 1074
74 Ga0495638_0069880 3300046460 Bacteria 2151
75 Ga0495594_0012227 3300046499 Bacteria 4470
76 Ga0495588_0138917 3300046674 Bacteria 1283
77 Ga0495613_0042594 3300046689 Bacteria 3359
78 Ga0495670_0022005 3300046691 Bacteria 3147
79 Ga0495649_0178938 3300046694 Bacteria 1107
80 Ga0495683_0123164 3300047323 Bacteria 1229
81 Ga0495685_001918 3300047447 Bacteria 6425
82 Ga0495681_0000244 3300047470 Bacteria 45285
83 Ga0496116_0001869 3300048919 Bacteria 22748
84 Ga0496121_0008859 3300048924 Bacteria 11712
85 Ga0501083_0001520 3300049744 Bacteria 15846
86 nmdc:mga0yw44_34207_c1 3300050492 Bacteria 2976
87 nmdc:mga05p37_295575_c1 3300050507 Bacteria 1926
88 nmdc:mga06r32_70699_c1 3300050510 Bacteria 3376
89 nmdc:mga08y16_152539_c1 3300050511 Bacteria 2402
90 nmdc:mga0n895_171541_c1 3300050512 Bacteria 2201
91 nmdc:mga0n895_48050_c1 3300050512 Bacteria 4175
92 nmdc:mga0rr50_57209_c1 3300050513 Bacteria 2916
93 nmdc:mga08x19_255_c1 3300050514 Bacteria 40439
94 Ga0500578_0035854 3300053086 Bacteria 3187
95 Ga0500644_0008875 3300053088 Bacteria 2668
96 Ga0500566_0031115 3300053094 Bacteria 3112
97 Ga0500660_043176 3300053100 Bacteria 2281
98 Ga0500553_020646 3300053101 Bacteria 3338
99 Ga0500560_003923 3300053107 Bacteria 3086
100 Ga0500569_001112 3300053109 Bacteria 4934
101 Ga0500608_028536 3300053122 Bacteria 2634
102 Ga0500652_004054 3300053131 Bacteria 4495
103 Ga0500600_0063653 3300053149 Bacteria 2046
104 Ga0500622_0001157 3300053156 Bacteria 21901
105 Ga0500624_000120 3300053157 Bacteria 35695
106 Ga0500633_0035151 3300053160 Bacteria 1648
107 Ga0500637_0000076 3300053178 Bacteria 35528
108 Ga0466962_0019983 3300061719 Bacteria 3219
109 Ga0530510_0070619 3300061734 Bacteria 2534

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046459 Ga0495629_0312714 Ga0495629_0312714_33_1031 306
2 3300053149 Ga0500600_0063653 Ga0500600_0063653_1031_2029 306
3 3300046674 Ga0495588_0138917 Ga0495588_0138917_24_1079 325
4 3300046694 Ga0495649_0178938 Ga0495649_0178938_32_1087 325
5 3300050492 nmdc:mga0yw44_34207_c1 nmdc:mga0yw44_34207_c1_503_1501 325
6 3300026095 Ga0207676_10340150 Ga0207676_103401502 330
7 3300047323 Ga0495683_0123164 Ga0495683_0123164_40_1152 344
8 3300053160 Ga0500633_0035151 Ga0500633_0035151_61_1173 344
9 3300039447 Ga0436361_0573255 Ga0436361_0573255_7913_8995 349
10 3300041456 Ga0451795_1561661 Ga0451795_1561661_312_1421 350
11 3300048919 Ga0496116_0001869 Ga0496116_0001869_1457_2539 353
12 3300049744 Ga0501083_0001520 Ga0501083_0001520_14528_15658 354
13 3300006844 Ga0075428_100026448 Ga0075428_1000264483 357
14 3300005445 Ga0070708_100046328 Ga0070708_1000463284 363
15 3300046460 Ga0495638_0069880 Ga0495638_0069880_36_1205 363
16 3300053157 Ga0500624_000120 Ga0500624_000120_15237_16355 363
17 3300053178 Ga0500637_0000076 Ga0500637_0000076_19098_20216 363
18 3300021441 Ga0213871_10009357 Ga0213871_100093573 365
19 3300028794 Ga0307515_10020086 Ga0307515_100200864 365
20 3300044712 Ga0453684_0000171 Ga0453684_0000171_103362_104468 365
21 3300006038 Ga0075365_10010876 Ga0075365_100108766 366
22 3300005548 Ga0070665_100000292 Ga0070665_10000029231 367
23 3300025936 Ga0207670_10107546 Ga0207670_101075463 367
24 3300028379 Ga0268266_10000885 Ga0268266_1000088520 367
25 3300028786 Ga0307517_10001618 Ga0307517_1000161818 367
26 3300031507 Ga0307509_10188061 Ga0307509_101880612 367
27 3300031616 Ga0307508_10020115 Ga0307508_100201154 367
28 3300031730 Ga0307516_10059479 Ga0307516_100594792 367
29 3300033179 Ga0307507_10076611 Ga0307507_100766112 367
30 3300046499 Ga0495594_0012227 Ga0495594_0012227_2651_3877 367
31 3300046689 Ga0495613_0042594 Ga0495613_0042594_2067_3281 367
32 3300046691 Ga0495670_0022005 Ga0495670_0022005_65_1291 367
33 3300047447 Ga0495685_001918 Ga0495685_001918_973_2199 367
34 3300047470 Ga0495681_0000244 Ga0495681_0000244_3168_4394 367
35 3300053086 Ga0500578_0035854 Ga0500578_0035854_1896_3122 367
36 3300053094 Ga0500566_0031115 Ga0500566_0031115_642_1856 367
37 3300053100 Ga0500660_043176 Ga0500660_043176_405_1619 367
38 3300053101 Ga0500553_020646 Ga0500553_020646_519_1733 367
39 3300053109 Ga0500569_001112 Ga0500569_001112_3115_4341 367
40 3300053131 Ga0500652_004054 Ga0500652_004054_2209_3435 367
41 3300005327 Ga0070658_10001805 Ga0070658_1000180513 368
42 3300025909 Ga0207705_10008431 Ga0207705_100084315 368
43 3300048924 Ga0496121_0008859 Ga0496121_0008859_1420_2547 368
44 3300050511 nmdc:mga08y16_152539_c1 nmdc:mga08y16_152539_c1_212_1321 368
45 3300006871 Ga0075434_100226264 Ga0075434_1002262642 370
46 3300006914 Ga0075436_100000585 Ga0075436_10000058518 370
47 3300044693 Ga0466961_0011902 Ga0466961_0011902_2808_4121 370
48 3300050512 nmdc:mga0n895_171541_c1 nmdc:mga0n895_171541_c1_790_1908 370
49 3300050514 nmdc:mga08x19_255_c1 nmdc:mga08x19_255_c1_32197_33327 370
50 3300061719 Ga0466962_0019983 Ga0466962_0019983_839_2152 370
51 3300005335 Ga0070666_10001398 Ga0070666_100013987 371
52 3300005618 Ga0068864_100169892 Ga0068864_1001698922 371
53 3300006847 Ga0075431_100080077 Ga0075431_1000800772 371
54 3300009094 Ga0111539_10002501 Ga0111539_100025014 371
55 3300014326 Ga0157380_10005837 Ga0157380_100058372 371
56 3300025903 Ga0207680_10004541 Ga0207680_100045416 371
57 3300026095 Ga0207676_10113237 Ga0207676_101132373 371
58 3300027907 Ga0207428_10117569 Ga0207428_101175691 371
59 3300050510 nmdc:mga06r32_70699_c1 nmdc:mga06r32_70699_c1_1835_2977 371
60 3300011119 Ga0105246_10047903 Ga0105246_100479033 372
61 3300014325 Ga0163163_10332733 Ga0163163_103327332 372
62 3300061734 Ga0530510_0070619 Ga0530510_0070619_453_1616 372
63 iso_pu_bacteria 2585427649 2586064476 372
64 iso_pu_bacteria 2808606522 2809586300 372
65 3300003322 rootL2_10169407 rootL2_101694073 373
66 3300033179 Ga0307507_10051112 Ga0307507_100511124 373
67 3300044658 Ga0466972_0030481 Ga0466972_0030481_117_1259 373
68 3300053107 Ga0500560_003923 Ga0500560_003923_1292_2455 373
69 iso_pu_bacteria 8003314358 8003323146 373
70 3300050507 nmdc:mga05p37_295575_c1 nmdc:mga05p37_295575_c1_205_1332 374
71 iso_pu_bacteria 2881644220 2881644811 375
72 iso_pu_bacteria 8048127548 8048133611 375
73 3300005328 Ga0070676_10015919 Ga0070676_100159192 376
74 3300005435 Ga0070714_100001456 Ga0070714_1000014569 376
75 3300006163 Ga0070715_10000037 Ga0070715_1000003723 376
76 3300025905 Ga0207685_10000035 Ga0207685_1000003525 376
77 3300025929 Ga0207664_10015050 Ga0207664_100150507 376
78 3300031838 Ga0307518_10001238 Ga0307518_100012389 376
79 3300039447 Ga0436361_0213845 Ga0436361_0213845_1571_2704 376
80 iso_pu_bacteria 3006984091 3006986614 376
81 iso_pu_bacteria 8007375930 8007378340 376
82 iso_pu_bacteria 8007371054 8007374233 377
83 3300006871 Ga0075434_100013052 Ga0075434_1000130522 378
84 3300031238 Ga0265332_10003013 Ga0265332_100030136 378
85 3300031344 Ga0265316_10001885 Ga0265316_1000188519 378
86 3300031616 Ga0307508_10004850 Ga0307508_100048505 378
87 3300031712 Ga0265342_10000105 Ga0265342_1000010525 378
88 3300044712 Ga0453684_0014501 Ga0453684_0014501_11135_12274 378
89 3300050512 nmdc:mga0n895_48050_c1 nmdc:mga0n895_48050_c1_691_1845 378
90 3300050513 nmdc:mga0rr50_57209_c1 nmdc:mga0rr50_57209_c1_307_1458 378
91 iso_pu_bacteria 2915768154 2915769780 378
92 3300005329 Ga0070683_100042938 Ga0070683_1000429387 379
93 3300044673 Ga0453683_0017459 Ga0453683_0017459_2342_3499 379
94 3300045051 Ga0451576_0000229 Ga0451576_0000229_126507_127664 379
95 3300005546 Ga0070696_100072806 Ga0070696_1000728062 380
96 iso_pu_bacteria 8025478263 8025479889 380
97 3300005467 Ga0070706_100069434 Ga0070706_1000694342 381
98 3300005468 Ga0070707_100197339 Ga0070707_1001973392 381
99 3300005536 Ga0070697_100000332 Ga0070697_10000033213 381
100 3300025910 Ga0207684_10038673 Ga0207684_100386734 381
101 iso_pu_bacteria 2881644220 2881644831 381
102 iso_pu_bacteria 8056667051 8056667863 381
103 3300025942 Ga0207689_10013804 Ga0207689_100138045 382
104 iso_pu_bacteria 8056447290 8056450097 384
105 3300005518 Ga0070699_100034964 Ga0070699_1000349644 386
106 3300005617 Ga0068859_100064069 Ga0068859_1000640693 386
107 3300005719 Ga0068861_100328961 Ga0068861_1003289611 386
108 3300005843 Ga0068860_100018453 Ga0068860_1000184536 386
109 3300006931 Ga0097620_100064069 Ga0097620_1000640693 386
110 3300009148 Ga0105243_10005837 Ga0105243_100058376 386
111 3300009176 Ga0105242_10002514 Ga0105242_100025143 386
112 3300009553 Ga0105249_10029781 Ga0105249_100297812 386
113 3300025934 Ga0207686_10145354 Ga0207686_101453542 386
114 3300028381 Ga0268264_10273766 Ga0268264_102737661 386
115 iso_pu_bacteria 2513237159 2513999648 386
116 iso_pu_bacteria 2842521101 2842525759 386
117 3300005471 Ga0070698_100005722 Ga0070698_1000057227 389
118 iso_pu_bacteria 2989771324 2989774675 392
119 iso_pu_bacteria 2582581283 2585168608 393
120 iso_pu_bacteria 2582581306 2585270459 393
121 iso_pu_bacteria 2582581865 2585386298 393
122 iso_pu_bacteria 2582581866 2585395886 393
123 iso_pu_bacteria 2643221607 2644049876 393
124 iso_pu_bacteria 2643221636 2644203339 393
125 iso_pu_bacteria 2643221686 2644485150 393
126 iso_pu_bacteria 2643221689 2644497651 393
127 iso_pu_bacteria 2838074704 2838078546 393
128 iso_pu_bacteria 2534681796 2535519825 395
129 iso_pu_bacteria 8005542996 8005547553 395
130 iso_pu_bacteria 2657244999 2657686439 396
131 iso_pu_bacteria 2802429268 2804755052 396
132 3300003792 Ga0055540_1003085 Ga0055540_10030858 399
133 3300025303 Ga0209051_1000790 Ga0209051_100079020 399
134 iso_pu_bacteria 2643221637 2644210885 400
135 iso_pu_bacteria 2643221718 2644654419 400
136 iso_pu_bacteria 2989349275 2989353464 401
137 3300037471 Ga0395905_0001478 Ga0395905_0001478_5600_6865 405
138 3300053088 Ga0500644_0008875 Ga0500644_0008875_31_1287 416
139 3300053122 Ga0500608_028536 Ga0500608_028536_432_1688 416
140 3300053156 Ga0500622_0001157 Ga0500622_0001157_7309_8565 416
141 3300003316 rootH1_10119443 rootH1_101194431 419

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02350

Epimerase_2

UDP-N-acetylglucosamine 2-epimerase

29

371

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
5enz-assembly1.cif.gz_B s. aureus mnaa-udp co-structure 0.9639 1 377
5enz-assembly1.cif.gz_B s. aureus mnaa-udp co-structure 0.9614 1 377
7vz6-assembly1.cif.gz_G the crystal structure of non-hydrolyzing udpglcnac 2-epimerase in complex with udp-glucose 0.9587 1 371
7vz6-assembly1.cif.gz_E the crystal structure of non-hydrolyzing udpglcnac 2-epimerase in complex with udp-glucose 0.9587 1 371
7vz6-assembly1.cif.gz_B the crystal structure of non-hydrolyzing udpglcnac 2-epimerase in complex with udp-glucose 0.9573 1 371
ID Description Score Start End Superfamily
af_P27828_2_186_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9752 4 183 3.40.50.2000
af_Q2G1J3_4_329_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9637 5 330 3.40.50.2000
af_Q2G1J3_4_329_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.955 5 330 3.40.50.2000
af_P27828_3_337_3.90.180.10 Alpha Beta;Alpha-Beta Complex;Quinone Oxidoreductase; Chain A, domain 1;Medium-chain alcohol dehydrogenases, catalytic domain 0.9491 5 330 3.90.180.10
1v4vB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9444 2 183 3.40.50.2000
ID Description Score Start End GO Terms
AF-X0W2Z8-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) (EC 5.1.3.14) 0.9927 1 111 GO:0008761
AF-A0A2G4G3D4-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) (EC 5.1.3.14) 0.9895 2 116 GO:0008761
AF-A0A845EV33-F1-model_v4 deleted 0.9881 2 111
AF-A0A7C3U697-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) (EC 5.1.3.14) 0.9872 1 126 GO:0008761
AF-A0A7C3QPR3-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) (EC 5.1.3.14) 0.9851 3 89 GO:0008761

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pLDDT pTM Quality
87.45 0.85 High
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Predicted Structure (AlphaFold2)

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