F184229

General Info

Members Datasets Scaffolds Average Seq Length
141 127 110 372

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2946045630|2946049265
Length 398
Sequence TDVTAHAPTDVTTDVTTDAAGTAAPAGAEVSAARAASTLSRPFTVRGLTARNRIAMAPMTRQFSPDGVPGQDVADYYTRRAAGDVGLIITEGTYVDHASAGTSDRVPRFHGEAALAGWKNVADSVHRAGGAIIPQLWHVGVTRTEGAGPVPDAEPVGPSGLSLSGEPKGRAMTQQDLDDVIAAFADAAAAAERLGFDGVELHGAHGYLIDQFLWSGSNRRTDAYGGDLVSRTRFAAEIVAACRAAVSDAFPLFFRMSQWKSDAYDAKLARTPRELDDLLTPLAEAGVDVFHASTRRYWLPEFEGSDLNLAGWVKKISGRPTLTVGSVGLDDDFFSAFQGNDSKVTGIEQLLDRLERDEFDMVAVGRALISDPEWAAKTLRGRTADITPFTAEMLTTLR

Samples

Sample ID Description Type Environment
1 2506783011 Frankia datiscae Dg1 Isolate Nodule
2 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
3 2643221548 Streptomyces sp. Root55 Isolate Unclassified
4 2643221578 Streptomyces sp. Root63 Isolate Unclassified
5 2643221583 Caulobacter sp. Root655 Isolate Unclassified
6 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
7 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
8 2773857933 Frankia sp. BMG5.30 Isolate Nodule
9 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
10 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
11 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
12 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
13 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
14 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
15 2885526491 Paenibacillus sp. LK1 Isolate Rhizosphere
16 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
17 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
18 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
19 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
20 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
21 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
22 2996706504 Paenibacillus sp. OT2-17 Isolate Rhizosphere
23 3006425503 Streptomyces zingiberis PLAI1-29 Isolate Unclassified
24 3006879489 Bacillus atrophaeus UCMB-5137 Isolate Rhizosphere
25 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
26 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
27 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
28 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
29 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
30 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
31 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
32 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
33 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
34 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
35 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
36 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
37 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
38 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
39 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
41 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
42 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
43 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
44 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
45 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
46 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
47 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
48 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
49 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
50 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
51 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
61 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
65 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
66 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
67 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
68 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
69 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
70 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
71 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
72 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
73 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
74 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
75 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
76 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
77 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
78 3300042133 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB1023D_E14_070716_134 Metagenome Rhizosphere
79 3300042135 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 Metagenome Rhizosphere
80 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
81 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
82 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
83 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
84 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
85 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
86 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
87 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
88 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
89 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
90 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
91 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
92 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
93 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
94 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
95 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
96 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
97 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
98 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
99 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
100 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
101 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
102 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
103 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
104 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
105 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
106 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
107 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
108 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
109 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
110 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
111 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
112 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
113 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
114 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
115 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
116 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
117 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
118 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
119 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
120 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
121 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
122 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
123 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
124 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
125 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
126 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
127 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 78.01
Metatranscriptomes 0
Isolates 21.99

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.51
Nodule 3.55
Rhizoplane 0.71
Rhizosphere 59.57
Stem 0
Stem Tuber 0
Unclassified 27.66

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24738J21930_10002034 3300002075 Bacteria 5423
2 rootH1_10012154 3300003316 Bacteria 5118
3 rootL2_10141888 3300003322 Bacteria 1839
4 rootH1_10022737 3300003323 Bacteria 10789
5 JGI25160J50197_1013109 3300003354 Bacteria 2842
6 Ga0070668_100020242 3300005347 Bacteria 5020
7 Ga0070669_100000030 3300005353 Bacteria 160753
8 Ga0068856_100338919 3300005614 Bacteria 1522
9 Ga0068859_100031121 3300005617 Bacteria 5356
10 Ga0068861_100000003 3300005719 Bacteria 109394
11 Ga0068863_100001148 3300005841 Bacteria 26446
12 Ga0068860_100309668 3300005843 Bacteria 1548
13 Ga0068862_100000022 3300005844 Bacteria 214075
14 Ga0075368_10012106 3300006042 Bacteria 3150
15 Ga0097620_100031122 3300006931 Bacteria 5356
16 Ga0079104_1007024 3300006946 Bacteria 4149
17 Ga0099794_10005700 3300007265 Bacteria 5016
18 Ga0105240_10152763 3300009093 Unclassified 2748
19 Ga0105245_10109079 3300009098 Bacteria 2572
20 Ga0105242_10044999 3300009176 Bacteria 3576
21 Ga0105248_10000080 3300009177 Bacteria 111519
22 Ga0105248_10038933 3300009177 Bacteria 5323
23 Ga0105246_10040631 3300011119 Bacteria 3140
24 Ga0183367_1004 3300015688 Bacteria 716880
25 Ga0213876_10037935 3300021384 Bacteria 2542
26 Ga0213875_10000228 3300021388 Bacteria 56927
27 Ga0213875_10000241 3300021388 Bacteria 54707
28 Ga0207426_1004184 3300025302 Bacteria 7199
29 Ga0207426_1007181 3300025302 Bacteria 4701
30 Ga0207426_1009409 3300025302 Bacteria 3866
31 Ga0207426_1016638 3300025302 Bacteria 2633
32 Ga0207647_10041949 3300025904 Bacteria 2873
33 Ga0207681_10000036 3300025923 Bacteria 161782
34 Ga0207686_10061394 3300025934 Bacteria 2383
35 Ga0207711_10000566 3300025941 Bacteria 37693
36 Ga0207668_10019305 3300025972 Bacteria 4307
37 Ga0207702_10240616 3300026078 Bacteria 1695
38 Ga0207641_10000691 3300026088 Bacteria 36405
39 Ga0207675_100000029 3300026118 Bacteria 109352
40 Ga0209179_1014307 3300027512 Unclassified 1455
41 Ga0209813_10011984 3300027866 Bacteria 2279
42 Ga0268266_10105214 3300028379 Bacteria 2493
43 Ga0268265_10000006 3300028380 Bacteria 466482
44 Ga0268264_10285615 3300028381 Bacteria 1548
45 Ga0307517_10008703 3300028786 Bacteria 14521
46 Ga0307515_10088098 3300028794 Bacteria 3929
47 Ga0307511_10029065 3300030521 Bacteria 5002
48 Ga0307512_10005646 3300030522 Bacteria 12938
49 Ga0307513_10000009 3300031456 Bacteria 403893
50 Ga0307508_10003074 3300031616 Bacteria 17162
51 Ga0265314_10037923 3300031711 Bacteria 3487
52 Ga0307507_10171789 3300033179 Bacteria 1573
53 Ga0436364_1065372 3300037853 Bacteria 196587
54 Ga0436364_1153027 3300037853 Bacteria 22140
55 Ga0436364_1287507 3300037853 Bacteria 18007
56 Ga0400487_49001 3300039110 Bacteria 1589
57 Ga0439436_0002426 3300041404 Bacteria 5597
58 Ga0451853_3616674 3300041512 Bacteria 2394
59 Ga0439448_0006390 3300042005 Bacteria 3387
60 Ga0450894_000016 3300042131 Bacteria 23893
61 Ga0450894_001348 3300042131 Bacteria 3552
62 Ga0450896_000239 3300042133 Bacteria 4993
63 Ga0450899_000138 3300042135 Bacteria 6978
64 Ga0450906_002005 3300042145 Bacteria 4446
65 Ga0450906_002263 3300042145 Bacteria 4218
66 Ga0450908_007496 3300042184 Bacteria 2057
67 Ga0466969_0002259 3300044656 Bacteria 10293
68 Ga0466972_0009434 3300044658 Bacteria 4901
69 Ga0466972_0054455 3300044658 Bacteria 1924
70 Ga0466963_0046524 3300044694 Bacteria 2861
71 Ga0466971_0026447 3300044719 Bacteria 2593
72 Ga0466970_0011898 3300044765 Bacteria 4439
73 Ga0466960_0005223 3300044901 Bacteria 5132
74 Ga0495627_000777 3300046453 Bacteria 23588
75 Ga0495603_0090325 3300046455 Bacteria 1791
76 Ga0495590_0049597 3300046457 Bacteria 1465
77 Ga0495629_0096827 3300046459 Bacteria 2059
78 Ga0495651_0012870 3300046462 Bacteria 6463
79 Ga0495594_0014543 3300046499 Bacteria 4125
80 Ga0495616_0000021 3300046513 Bacteria 160303
81 Ga0495630_0225128 3300046517 Bacteria 1432
82 Ga0495666_0035400 3300046526 Bacteria 2434
83 Ga0495633_0072748 3300046558 Bacteria 1603
84 Ga0495668_0011929 3300046616 Bacteria 5175
85 Ga0495635_0127613 3300046663 Bacteria 1734
86 Ga0495588_0014888 3300046674 Bacteria 3732
87 Ga0495657_0001921 3300046675 Bacteria 17682
88 Ga0495657_0029889 3300046675 Bacteria 3819
89 Ga0495613_0028492 3300046689 Bacteria 4154
90 Ga0495624_0167455 3300046690 Bacteria 1341
91 Ga0495589_0099298 3300046794 Bacteria 1409
92 Ga0495636_0001772 3300047318 Bacteria 8232
93 Ga0495636_0028924 3300047318 Bacteria 2261
94 Ga0495687_019764 3300047443 Bacteria 3295
95 Ga0495673_0000039 3300047469 Bacteria 301943
96 Ga0496117_0048937 3300048920 Bacteria 3013
97 Ga0496119_0001382 3300048922 Bacteria 29525
98 Ga0496120_0000197 3300048923 Bacteria 103378
99 Ga0496122_0004132 3300048925 Bacteria 18352
100 Ga0496122_0026917 3300048925 Bacteria 4937
101 Ga0496122_0045233 3300048925 Bacteria 3424
102 Ga0496124_0037943 3300048927 Bacteria 4186
103 Ga0496125_0039767 3300048928 Bacteria 4043
104 Ga0501070_0228321 3300049586 Bacteria 1526
105 nmdc:mga06z11_125699_c1 3300050494 Bacteria 1435
106 nmdc:mga04h51_48618_c1 3300050495 Bacteria 1414
107 Ga0500560_003777 3300053107 Bacteria 3115
108 Ga0500604_0000924 3300053151 Bacteria 8109
109 Ga0500627_0000708 3300053158 Bacteria 8869
110 Ga0466962_0019441 3300061719 Bacteria 3264

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046453 Ga0495627_000777 Ga0495627_000777_1884_2921 329
2 3300046526 Ga0495666_0035400 Ga0495666_0035400_367_1368 331
3 3300031711 Ga0265314_10037923 Ga0265314_100379232 341
4 iso_pu_bacteria 2885526491 2885529126 341
5 iso_pu_bacteria 2996706504 2996706951 341
6 iso_pu_bacteria 3006879489 3006881010 341
7 3300015688 Ga0183367_1004 Ga0183367_1004330 342
8 3300039110 Ga0400487_49001 Ga0400487_49001_272_1309 343
9 3300048920 Ga0496117_0048937 Ga0496117_0048937_1223_2314 348
10 3300048925 Ga0496122_0026917 Ga0496122_0026917_3176_4267 348
11 3300048928 Ga0496125_0039767 Ga0496125_0039767_1132_2235 351
12 3300044719 Ga0466971_0026447 Ga0466971_0026447_323_1435 352
13 3300061719 Ga0466962_0019441 Ga0466962_0019441_1452_2564 352
14 3300028794 Ga0307515_10088098 Ga0307515_100880982 353
15 3300047469 Ga0495673_0000039 Ga0495673_0000039_66298_67401 353
16 3300003322 rootL2_10141888 rootL2_101418881 358
17 3300048927 Ga0496124_0037943 Ga0496124_0037943_1499_2602 358
18 3300044658 Ga0466972_0009434 Ga0466972_0009434_1232_2317 360
19 3300044901 Ga0466960_0005223 Ga0466960_0005223_635_1720 360
20 iso_pu_bacteria 2643221583 2643925117 360
21 iso_pu_bacteria 2877676314 2877678283 361
22 3300005347 Ga0070668_100020242 Ga0070668_1000202425 364
23 3300005353 Ga0070669_100000030 Ga0070669_100000030143 364
24 3300005617 Ga0068859_100031121 Ga0068859_1000311212 364
25 3300005719 Ga0068861_100000003 Ga0068861_10000000357 364
26 3300005841 Ga0068863_100001148 Ga0068863_10000114814 364
27 3300005843 Ga0068860_100309668 Ga0068860_1003096681 364
28 3300005844 Ga0068862_100000022 Ga0068862_10000002261 364
29 3300006931 Ga0097620_100031122 Ga0097620_1000311226 364
30 3300007265 Ga0099794_10005700 Ga0099794_100057004 364
31 3300009093 Ga0105240_10152763 Ga0105240_101527632 364
32 3300009177 Ga0105248_10000080 Ga0105248_1000008025 364
33 3300025923 Ga0207681_10000036 Ga0207681_1000003626 364
34 3300025941 Ga0207711_10000566 Ga0207711_1000056636 364
35 3300025972 Ga0207668_10019305 Ga0207668_100193054 364
36 3300026088 Ga0207641_10000691 Ga0207641_1000069125 364
37 3300026118 Ga0207675_100000029 Ga0207675_10000002954 364
38 3300027512 Ga0209179_1014307 Ga0209179_10143072 364
39 3300028380 Ga0268265_10000006 Ga0268265_1000000657 364
40 3300028381 Ga0268264_10285615 Ga0268264_102856151 364
41 3300030521 Ga0307511_10029065 Ga0307511_100290652 364
42 3300006946 Ga0079104_1007024 Ga0079104_10070242 365
43 3300009176 Ga0105242_10044999 Ga0105242_100449993 367
44 3300009177 Ga0105248_10038933 Ga0105248_100389331 367
45 3300025934 Ga0207686_10061394 Ga0207686_100613942 367
46 iso_pu_bacteria 2784746763 2785343208 367
47 iso_pu_bacteria 8048406513 8048412669 367
48 3300021384 Ga0213876_10037935 Ga0213876_100379352 368
49 3300021388 Ga0213875_10000228 Ga0213875_1000022816 368
50 3300021388 Ga0213875_10000241 Ga0213875_100002414 368
51 3300028786 Ga0307517_10008703 Ga0307517_1000870313 368
52 3300037853 Ga0436364_1065372 Ga0436364_1065372_149528_150697 368
53 3300037853 Ga0436364_1153027 Ga0436364_1153027_11492_12631 368
54 3300046499 Ga0495594_0014543 Ga0495594_0014543_2769_3878 368
55 3300046690 Ga0495624_0167455 Ga0495624_0167455_133_1248 368
56 3300053107 Ga0500560_003777 Ga0500560_003777_404_1519 368
57 iso_pu_bacteria 2582581313 2585308875 368
58 iso_pu_bacteria 2643221548 2643763310 368
59 iso_pu_bacteria 2643221682 2644463820 368
60 iso_pu_bacteria 2875391855 2875397973 368
61 iso_pu_bacteria 2912757875 2912761992 368
62 iso_pu_bacteria 2966598605 2966602274 368
63 iso_pu_bacteria 3006425503 3006427434 368
64 iso_pu_bacteria 8025530807 8025531824 368
65 3300046513 Ga0495616_0000021 Ga0495616_0000021_45892_47058 369
66 3300046616 Ga0495668_0011929 Ga0495668_0011929_988_2154 369
67 3300048925 Ga0496122_0045233 Ga0496122_0045233_2253_3362 369
68 3300053151 Ga0500604_0000924 Ga0500604_0000924_3476_4642 369
69 3300053158 Ga0500627_0000708 Ga0500627_0000708_1414_2580 369
70 iso_pu_bacteria 2506783011 2506868013 369
71 iso_pu_bacteria 2773857933 2774904396 369
72 iso_pu_bacteria 2887478801 2887484340 369
73 iso_pu_bacteria 8056829672 8056833555 369
74 3300031456 Ga0307513_10000009 Ga0307513_1000000988 370
75 3300037853 Ga0436364_1287507 Ga0436364_1287507_1020_2195 370
76 3300048922 Ga0496119_0001382 Ga0496119_0001382_18317_19462 370
77 3300048923 Ga0496120_0000197 Ga0496120_0000197_82180_83325 370
78 iso_pu_bacteria 2791355406 2793979049 370
79 iso_pu_bacteria 2912715099 2912719869 370
80 iso_pu_bacteria 8047893842 8047902566 370
81 iso_pu_bacteria 8048369669 8048370364 370
82 iso_pu_bacteria 8048379754 8048389058 370
83 3300003316 rootH1_10012154 rootH1_100121544 371
84 3300028379 Ga0268266_10105214 Ga0268266_101052142 371
85 3300041512 Ga0451853_3616674 Ga0451853_3616674_949_2070 371
86 3300042131 Ga0450894_001348 Ga0450894_001348_1610_2731 371
87 3300042133 Ga0450896_000239 Ga0450896_000239_1710_2831 371
88 3300042135 Ga0450899_000138 Ga0450899_000138_5441_6562 371
89 3300042145 Ga0450906_002005 Ga0450906_002005_737_1858 371
90 3300044694 Ga0466963_0046524 Ga0466963_0046524_336_1454 371
91 3300049586 Ga0501070_0228321 Ga0501070_0228321_135_1253 371
92 iso_pu_bacteria 2862382967 2862383692 371
93 iso_pu_bacteria 2863404153 2863404520 371
94 iso_pu_bacteria 2990059506 2990063164 371
95 iso_pu_bacteria 8008558824 8008567203 371
96 3300002075 JGI24738J21930_10002034 JGI24738J21930_100020345 372
97 3300003323 rootH1_10022737 rootH1_100227376 372
98 3300003354 JGI25160J50197_1013109 JGI25160J50197_10131093 372
99 3300005614 Ga0068856_100338919 Ga0068856_1003389192 372
100 3300006042 Ga0075368_10012106 Ga0075368_100121061 372
101 3300009098 Ga0105245_10109079 Ga0105245_101090793 372
102 3300011119 Ga0105246_10040631 Ga0105246_100406312 372
103 3300025302 Ga0207426_1004184 Ga0207426_10041847 372
104 3300025302 Ga0207426_1007181 Ga0207426_10071813 372
105 3300025302 Ga0207426_1009409 Ga0207426_10094094 372
106 3300025302 Ga0207426_1016638 Ga0207426_10166382 372
107 3300025904 Ga0207647_10041949 Ga0207647_100419492 372
108 3300026078 Ga0207702_10240616 Ga0207702_102406162 372
109 3300027866 Ga0209813_10011984 Ga0209813_100119841 372
110 3300030522 Ga0307512_10005646 Ga0307512_1000564611 372
111 3300031616 Ga0307508_10003074 Ga0307508_1000307411 372
112 3300033179 Ga0307507_10171789 Ga0307507_101717891 372
113 3300041404 Ga0439436_0002426 Ga0439436_0002426_1203_2327 372
114 3300042005 Ga0439448_0006390 Ga0439448_0006390_752_1885 372
115 3300042131 Ga0450894_000016 Ga0450894_000016_19684_20814 372
116 3300042145 Ga0450906_002263 Ga0450906_002263_483_1613 372
117 3300042184 Ga0450908_007496 Ga0450908_007496_99_1229 372
118 3300044656 Ga0466969_0002259 Ga0466969_0002259_6337_7461 372
119 3300044658 Ga0466972_0054455 Ga0466972_0054455_751_1890 372
120 3300044765 Ga0466970_0011898 Ga0466970_0011898_1138_2289 372
121 3300046455 Ga0495603_0090325 Ga0495603_0090325_181_1338 372
122 3300046457 Ga0495590_0049597 Ga0495590_0049597_129_1253 372
123 3300046459 Ga0495629_0096827 Ga0495629_0096827_676_1821 372
124 3300046462 Ga0495651_0012870 Ga0495651_0012870_4766_5908 372
125 3300046517 Ga0495630_0225128 Ga0495630_0225128_50_1168 372
126 3300046558 Ga0495633_0072748 Ga0495633_0072748_184_1305 372
127 3300046663 Ga0495635_0127613 Ga0495635_0127613_319_1440 372
128 3300046674 Ga0495588_0014888 Ga0495588_0014888_1091_2212 372
129 3300046675 Ga0495657_0001921 Ga0495657_0001921_10914_12032 372
130 3300046675 Ga0495657_0029889 Ga0495657_0029889_476_1597 372
131 3300046689 Ga0495613_0028492 Ga0495613_0028492_32_1150 372
132 3300046794 Ga0495589_0099298 Ga0495589_0099298_43_1167 372
133 3300047318 Ga0495636_0001772 Ga0495636_0001772_329_1453 372
134 3300047318 Ga0495636_0028924 Ga0495636_0028924_380_1501 372
135 3300047443 Ga0495687_019764 Ga0495687_019764_1366_2490 372
136 3300048925 Ga0496122_0004132 Ga0496122_0004132_2715_3845 372
137 3300050494 nmdc:mga06z11_125699_c1 nmdc:mga06z11_125699_c1_293_1423 372
138 3300050495 nmdc:mga04h51_48618_c1 nmdc:mga04h51_48618_c1_33_1157 372
139 iso_pu_bacteria 2643221578 2643900396 372
140 iso_pu_bacteria 2643221673 2644405382 372
141 iso_pu_bacteria 2946045630 2946049265 372

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00724

Oxidored_FMN

NADH:flavin oxidoreductase / NADH oxidase family

38

385

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
8e5h-assembly1.cif.gz_A old yellow enzyme 5 (pcoye5) from pseudomonas chloritidismutans 0.9018 13 363
5epd-assembly1.cif.gz_A crystal structure of glycerol trinitrate reductase xdpb from agrobacterium sp. r89-1 (apo form) 0.8913 13 364
4rnw-assembly2.cif.gz_B truncated version of the g303 circular permutation of old yellow enzyme 0.8879 13 266
4rnw-assembly1.cif.gz_A truncated version of the g303 circular permutation of old yellow enzyme 0.8879 13 266
4rnu-assembly3.cif.gz_C g303 circular permutation of old yellow enzyme 0.8836 13 266
ID Description Score Start End Superfamily
af_Q69PA8_270_446_3.40.220.10 Alpha Beta;3-Layer(aba) Sandwich;Leucine Aminopeptidase, subunit E; domain 1;Leucine Aminopeptidase, subunit E, domain 1 0.907 148 175 3.40.220.10
af_Q8GYA3_1_324_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8774 24 352 3.20.20.70
af_Q6K3D8_275_451_3.40.220.10 Alpha Beta;3-Layer(aba) Sandwich;Leucine Aminopeptidase, subunit E; domain 1;Leucine Aminopeptidase, subunit E, domain 1 0.8737 147 175 3.40.220.10
4ot7A00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8657 13 361 3.20.20.70
5k1wA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8654 5 372 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A7Y2WSM9-F1-model_v4 deleted 0.9931 1 372
AF-A0A7Y2WSM9-F1-model_v4 deleted 0.9905 1 372
AF-A0A519Y922-F1-model_v4 12-oxophytodienoate reductase 0.9868 144 369 GO:0009056
GO:0010181
GO:0016491
AF-A0A3B9N8P5-F1-model_v4 12-oxophytodienoate reductase 0.9742 179 372 GO:0009056
GO:0010181
GO:0016491
AF-A0A4Q3BBD2-F1-model_v4 deleted 0.9723 59 369

Feature Viewer

pLDDT pTM Quality
92.1 0.92 High
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Predicted Structure (AlphaFold2)

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